hub GCF_003003495.1 genome assembly shortLabel Streptococcus pneumoniae (D39V 2018) longLabel Streptococcus pneumoniae (D39V 2018)/Streptococcus pneumoniae/GCF_003003495.1_ASM300349v1 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_003003495.1_ASM300349v1.description.html genome GCF_003003495.1 taxId 1313 groups groups.txt description Streptococcus pneumoniae (D39V 2018) twoBitPath GCF_003003495.1.2bit twoBitBptUrl GCF_003003495.1.2bit.bpt chromSizes GCF_003003495.1.chrom.sizes.txt chromAliasBb GCF_003003495.1.chromAlias.bb organism ASM300349v1 Mar. 2018 defaultPos NZ_CP027540.1:682190-692190 scientificName Streptococcus pneumoniae htmlPath html/GCF_003003495.1_ASM300349v1.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/003/003/495/GCF_003003495.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/003/003/495/GCF_003003495.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/003/003/495/GCF_003003495.1 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_003003495.1_ASM300349v1.assembly.bb type bigBed 6 html html/GCF_003003495.1_ASM300349v1.assembly searchIndex name searchTrix ixIxx/GCF_003003495.1_ASM300349v1.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_003003495.1_ASM300349v1.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_003003495.1_ASM300349v1.gc5Base.bw html html/GCF_003003495.1_ASM300349v1.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_003003495.1_ASM300349v1.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_003003495.1_ASM300349v1.tandemDups.bb type bigBed 12 track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_003003495.1_ASM300349v1.simpleRepeat.bb html html/GCF_003003495.1_ASM300349v1.simpleRepeat track ncbiGene longLabel NCBI gene predictions shortLabel NCBI Genes visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_003003495.1_ASM300349v1.ncbiGene.bb type bigGenePred html html/GCF_003003495.1_ASM300349v1.ncbiGene searchIndex name searchTrix ixIxx/GCF_003003495.1_ASM300349v1.ncbiGene.ix url https://www.ncbi.nlm.nih.gov/gene/?term=$$ urlLabel Entrez gene: labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCF_003003495.1_ASM300349v1.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_003003495.1_ASM300349v1.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_003003495.1_ASM300349v1.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_003003495.1_ASM300349v1.windowMasker.bb html html/GCF_003003495.1_ASM300349v1.windowMasker