# Assembly name: ASM325457v1 # Organism name: Mycobacterium kyogaense (high G+C Gram-positive bacteria) # Infraspecific name: strain=NCTC 11659 # Taxid: 2212479 # BioSample: SAMN09281965 # BioProject: PRJNA473784 # Submitter: Newcastle University # Date: 2018-06-18 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: QJUA01 # Assembly method: SPAdes v. 3.9.0 # Expected final version: yes # Genome coverage: 37.3x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_003254575.1 # RefSeq assembly accession: GCF_003254575.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003254605.1 GCF_003254605.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NODE_1_length_409598_cov_30.6865 unplaced-scaffold na na QJUA01000001.1 = NZ_QJUA01000001.1 Primary Assembly 409598 na NODE_2_length_265340_cov_29.9356 unplaced-scaffold na na QJUA01000002.1 = NZ_QJUA01000002.1 Primary Assembly 265340 na NODE_3_length_220704_cov_29.7194 unplaced-scaffold na na QJUA01000003.1 = NZ_QJUA01000003.1 Primary Assembly 220704 na NODE_4_length_219043_cov_28.4076 unplaced-scaffold na na QJUA01000004.1 = NZ_QJUA01000004.1 Primary Assembly 219043 na NODE_5_length_213595_cov_29.7387 unplaced-scaffold na na QJUA01000005.1 = NZ_QJUA01000005.1 Primary Assembly 213595 na NODE_6_length_203013_cov_29.7658 unplaced-scaffold na na QJUA01000006.1 = NZ_QJUA01000006.1 Primary Assembly 203013 na NODE_7_length_173258_cov_29.1276 unplaced-scaffold na na QJUA01000007.1 = NZ_QJUA01000007.1 Primary Assembly 173258 na NODE_8_length_156859_cov_29.5523 unplaced-scaffold na na QJUA01000008.1 = NZ_QJUA01000008.1 Primary Assembly 156859 na NODE_9_length_154320_cov_34.0436 unplaced-scaffold na na QJUA01000009.1 = NZ_QJUA01000009.1 Primary Assembly 154320 na NODE_10_length_149069_cov_29.7835 unplaced-scaffold na na QJUA01000010.1 = NZ_QJUA01000010.1 Primary Assembly 149069 na NODE_11_length_129428_cov_28.7415 unplaced-scaffold na na QJUA01000011.1 = NZ_QJUA01000011.1 Primary Assembly 129428 na NODE_12_length_127407_cov_28.8758 unplaced-scaffold na na QJUA01000012.1 = NZ_QJUA01000012.1 Primary Assembly 127369 na NODE_13_length_115733_cov_27.7669 unplaced-scaffold na na QJUA01000013.1 = NZ_QJUA01000013.1 Primary Assembly 115733 na NODE_14_length_112878_cov_38.5773 unplaced-scaffold na na QJUA01000014.1 = NZ_QJUA01000014.1 Primary Assembly 112878 na NODE_15_length_109880_cov_29.7103 unplaced-scaffold na na QJUA01000015.1 = NZ_QJUA01000015.1 Primary Assembly 109880 na NODE_16_length_109453_cov_30.4412 unplaced-scaffold na na QJUA01000016.1 = NZ_QJUA01000016.1 Primary Assembly 109453 na NODE_17_length_102117_cov_28.4646 unplaced-scaffold na na QJUA01000017.1 = NZ_QJUA01000017.1 Primary Assembly 102117 na NODE_18_length_99428_cov_32.7555 unplaced-scaffold na na QJUA01000018.1 = NZ_QJUA01000018.1 Primary Assembly 99428 na NODE_19_length_99332_cov_33.5122 unplaced-scaffold na na QJUA01000019.1 = NZ_QJUA01000019.1 Primary Assembly 99332 na NODE_20_length_92950_cov_28.065 unplaced-scaffold na na QJUA01000020.1 = NZ_QJUA01000020.1 Primary Assembly 92950 na NODE_21_length_91515_cov_29.7212 unplaced-scaffold na na QJUA01000021.1 = NZ_QJUA01000021.1 Primary Assembly 91515 na NODE_22_length_91095_cov_36.089 unplaced-scaffold na na QJUA01000022.1 = NZ_QJUA01000022.1 Primary Assembly 91095 na NODE_23_length_88904_cov_41.5521 unplaced-scaffold na na QJUA01000023.1 = NZ_QJUA01000023.1 Primary Assembly 88904 na NODE_24_length_88141_cov_28.974 unplaced-scaffold na na QJUA01000024.1 = NZ_QJUA01000024.1 Primary Assembly 88141 na NODE_25_length_85790_cov_28.9979 unplaced-scaffold na na QJUA01000025.1 = NZ_QJUA01000025.1 Primary Assembly 85790 na NODE_26_length_82071_cov_33.3258 unplaced-scaffold na na QJUA01000026.1 = NZ_QJUA01000026.1 Primary Assembly 82071 na NODE_27_length_73528_cov_28.7049 unplaced-scaffold na na QJUA01000027.1 = NZ_QJUA01000027.1 Primary Assembly 73528 na NODE_28_length_72958_cov_27.1931 unplaced-scaffold na na QJUA01000028.1 = NZ_QJUA01000028.1 Primary Assembly 72958 na NODE_29_length_71519_cov_32.9039 unplaced-scaffold na na QJUA01000029.1 = NZ_QJUA01000029.1 Primary Assembly 71488 na NODE_30_length_67083_cov_34.2846 unplaced-scaffold na na QJUA01000030.1 = NZ_QJUA01000030.1 Primary Assembly 67083 na NODE_31_length_66749_cov_27.377 unplaced-scaffold na na QJUA01000031.1 = NZ_QJUA01000031.1 Primary Assembly 66749 na NODE_32_length_65916_cov_32.4724 unplaced-scaffold na na QJUA01000032.1 = NZ_QJUA01000032.1 Primary Assembly 65916 na NODE_33_length_62974_cov_41.0292 unplaced-scaffold na na QJUA01000033.1 = NZ_QJUA01000033.1 Primary Assembly 62974 na NODE_34_length_61727_cov_29.405 unplaced-scaffold na na QJUA01000034.1 = NZ_QJUA01000034.1 Primary Assembly 61727 na NODE_35_length_61486_cov_31.2937 unplaced-scaffold na na QJUA01000035.1 = NZ_QJUA01000035.1 Primary Assembly 61486 na NODE_36_length_61446_cov_25.0712 unplaced-scaffold na na QJUA01000036.1 = NZ_QJUA01000036.1 Primary Assembly 61446 na NODE_37_length_56035_cov_32.7302 unplaced-scaffold na na QJUA01000037.1 = NZ_QJUA01000037.1 Primary Assembly 56035 na NODE_38_length_55863_cov_34.6938 unplaced-scaffold na na QJUA01000038.1 = NZ_QJUA01000038.1 Primary Assembly 55863 na NODE_39_length_54575_cov_27.9196 unplaced-scaffold na na QJUA01000039.1 = NZ_QJUA01000039.1 Primary Assembly 54575 na NODE_40_length_51838_cov_33.8067 unplaced-scaffold na na QJUA01000040.1 = NZ_QJUA01000040.1 Primary Assembly 51838 na NODE_41_length_50241_cov_29.3147 unplaced-scaffold na na QJUA01000041.1 = NZ_QJUA01000041.1 Primary Assembly 50241 na NODE_42_length_48591_cov_30.426 unplaced-scaffold na na QJUA01000042.1 = NZ_QJUA01000042.1 Primary Assembly 48591 na NODE_43_length_48039_cov_28.2064 unplaced-scaffold na na QJUA01000043.1 = NZ_QJUA01000043.1 Primary Assembly 48039 na NODE_44_length_44575_cov_27.8352 unplaced-scaffold na na QJUA01000044.1 = NZ_QJUA01000044.1 Primary Assembly 44575 na NODE_45_length_41878_cov_28.5488 unplaced-scaffold na na QJUA01000045.1 = NZ_QJUA01000045.1 Primary Assembly 41878 na NODE_46_length_40018_cov_29.8645 unplaced-scaffold na na QJUA01000046.1 = NZ_QJUA01000046.1 Primary Assembly 40018 na NODE_47_length_35339_cov_28.2323 unplaced-scaffold na na QJUA01000047.1 = NZ_QJUA01000047.1 Primary Assembly 35339 na NODE_48_length_33847_cov_28.7794 unplaced-scaffold na na QJUA01000048.1 = NZ_QJUA01000048.1 Primary Assembly 33847 na NODE_49_length_33457_cov_31.3377 unplaced-scaffold na na QJUA01000049.1 = NZ_QJUA01000049.1 Primary Assembly 33457 na NODE_50_length_33009_cov_40.5346 unplaced-scaffold na na QJUA01000050.1 = NZ_QJUA01000050.1 Primary Assembly 33009 na NODE_51_length_31116_cov_25.2892 unplaced-scaffold na na QJUA01000051.1 = NZ_QJUA01000051.1 Primary Assembly 31116 na NODE_52_length_31050_cov_30.5558 unplaced-scaffold na na QJUA01000052.1 = NZ_QJUA01000052.1 Primary Assembly 31050 na NODE_53_length_30294_cov_29.1136 unplaced-scaffold na na QJUA01000053.1 = NZ_QJUA01000053.1 Primary Assembly 30294 na NODE_54_length_26842_cov_28.8552 unplaced-scaffold na na QJUA01000054.1 = NZ_QJUA01000054.1 Primary Assembly 26842 na NODE_55_length_26693_cov_30.3964 unplaced-scaffold na na QJUA01000055.1 = NZ_QJUA01000055.1 Primary Assembly 26693 na NODE_56_length_25565_cov_25.6727 unplaced-scaffold na na QJUA01000056.1 = NZ_QJUA01000056.1 Primary Assembly 25565 na NODE_57_length_24878_cov_29.6403 unplaced-scaffold na na QJUA01000057.1 = NZ_QJUA01000057.1 Primary Assembly 24878 na NODE_58_length_23443_cov_27.6944 unplaced-scaffold na na QJUA01000058.1 = NZ_QJUA01000058.1 Primary Assembly 23443 na NODE_59_length_22256_cov_27.7383 unplaced-scaffold na na QJUA01000059.1 = NZ_QJUA01000059.1 Primary Assembly 22256 na NODE_60_length_22096_cov_29.5446 unplaced-scaffold na na QJUA01000060.1 = NZ_QJUA01000060.1 Primary Assembly 22096 na NODE_61_length_21054_cov_31.2649 unplaced-scaffold na na QJUA01000061.1 = NZ_QJUA01000061.1 Primary Assembly 21054 na NODE_62_length_20961_cov_28.8588 unplaced-scaffold na na QJUA01000062.1 = NZ_QJUA01000062.1 Primary Assembly 20961 na NODE_63_length_20693_cov_26.4827 unplaced-scaffold na na QJUA01000063.1 = NZ_QJUA01000063.1 Primary Assembly 20693 na NODE_64_length_20180_cov_30.1556 unplaced-scaffold na na QJUA01000064.1 = NZ_QJUA01000064.1 Primary Assembly 20180 na NODE_65_length_19117_cov_27.4023 unplaced-scaffold na na QJUA01000065.1 = NZ_QJUA01000065.1 Primary Assembly 19117 na NODE_66_length_19019_cov_25.9436 unplaced-scaffold na na QJUA01000066.1 = NZ_QJUA01000066.1 Primary Assembly 19019 na NODE_67_length_18917_cov_28.4407 unplaced-scaffold na na QJUA01000067.1 = NZ_QJUA01000067.1 Primary Assembly 18917 na NODE_68_length_18511_cov_27.7192 unplaced-scaffold na na QJUA01000068.1 = NZ_QJUA01000068.1 Primary Assembly 18511 na NODE_69_length_16375_cov_28.7259 unplaced-scaffold na na QJUA01000069.1 = NZ_QJUA01000069.1 Primary Assembly 16287 na NODE_70_length_15897_cov_32.0141 unplaced-scaffold na na QJUA01000070.1 = NZ_QJUA01000070.1 Primary Assembly 15897 na NODE_71_length_15311_cov_27.9276 unplaced-scaffold na na QJUA01000071.1 = NZ_QJUA01000071.1 Primary Assembly 15311 na NODE_72_length_14995_cov_28.9824 unplaced-scaffold na na QJUA01000072.1 = NZ_QJUA01000072.1 Primary Assembly 14995 na NODE_73_length_14769_cov_28.9107 unplaced-scaffold na na QJUA01000073.1 = NZ_QJUA01000073.1 Primary Assembly 14769 na NODE_74_length_13151_cov_29.8643 unplaced-scaffold na na QJUA01000074.1 = NZ_QJUA01000074.1 Primary Assembly 13151 na NODE_75_length_13148_cov_29.3568 unplaced-scaffold na na QJUA01000075.1 = NZ_QJUA01000075.1 Primary Assembly 13148 na NODE_76_length_13111_cov_27.1611 unplaced-scaffold na na QJUA01000076.1 = NZ_QJUA01000076.1 Primary Assembly 13111 na NODE_77_length_11578_cov_30.9585 unplaced-scaffold na na QJUA01000077.1 = NZ_QJUA01000077.1 Primary Assembly 11578 na NODE_78_length_10571_cov_23.2836 unplaced-scaffold na na QJUA01000078.1 = NZ_QJUA01000078.1 Primary Assembly 10571 na NODE_79_length_10260_cov_25.4549 unplaced-scaffold na na QJUA01000079.1 = NZ_QJUA01000079.1 Primary Assembly 10260 na NODE_80_length_9803_cov_30.8296 unplaced-scaffold na na QJUA01000080.1 = NZ_QJUA01000080.1 Primary Assembly 9803 na NODE_81_length_9495_cov_26.5058 unplaced-scaffold na na QJUA01000081.1 = NZ_QJUA01000081.1 Primary Assembly 9495 na NODE_82_length_7244_cov_26.6785 unplaced-scaffold na na QJUA01000082.1 = NZ_QJUA01000082.1 Primary Assembly 7244 na NODE_83_length_6826_cov_21.358 unplaced-scaffold na na QJUA01000083.1 = NZ_QJUA01000083.1 Primary Assembly 6826 na NODE_84_length_6102_cov_31.1583 unplaced-scaffold na na QJUA01000084.1 = NZ_QJUA01000084.1 Primary Assembly 6102 na NODE_85_length_5424_cov_67.0642 unplaced-scaffold na na QJUA01000085.1 = NZ_QJUA01000085.1 Primary Assembly 5424 na NODE_86_length_5288_cov_26.9163 unplaced-scaffold na na QJUA01000086.1 = NZ_QJUA01000086.1 Primary Assembly 5288 na NODE_87_length_4672_cov_23.7036 unplaced-scaffold na na QJUA01000087.1 = NZ_QJUA01000087.1 Primary Assembly 4672 na NODE_88_length_4349_cov_26.6272 unplaced-scaffold na na QJUA01000088.1 = NZ_QJUA01000088.1 Primary Assembly 4349 na NODE_89_length_3752_cov_32.4061 unplaced-scaffold na na QJUA01000089.1 = NZ_QJUA01000089.1 Primary Assembly 3752 na NODE_90_length_3551_cov_28.7231 unplaced-scaffold na na QJUA01000090.1 = NZ_QJUA01000090.1 Primary Assembly 3551 na NODE_91_length_3144_cov_24.6487 unplaced-scaffold na na QJUA01000091.1 = NZ_QJUA01000091.1 Primary Assembly 3144 na NODE_92_length_2810_cov_11.0906 unplaced-scaffold na na QJUA01000092.1 = NZ_QJUA01000092.1 Primary Assembly 2810 na NODE_93_length_2035_cov_13.7338 unplaced-scaffold na na QJUA01000093.1 = NZ_QJUA01000093.1 Primary Assembly 2035 na NODE_94_length_1947_cov_17.3604 unplaced-scaffold na na QJUA01000094.1 = NZ_QJUA01000094.1 Primary Assembly 1947 na NODE_95_length_1862_cov_18.9879 unplaced-scaffold na na QJUA01000095.1 = NZ_QJUA01000095.1 Primary Assembly 1862 na NODE_96_length_1700_cov_21.6135 unplaced-scaffold na na QJUA01000096.1 = NZ_QJUA01000096.1 Primary Assembly 1700 na NODE_97_length_1568_cov_93.8494 unplaced-scaffold na na QJUA01000097.1 = NZ_QJUA01000097.1 Primary Assembly 1568 na NODE_98_length_1493_cov_137.235 unplaced-scaffold na na QJUA01000098.1 = NZ_QJUA01000098.1 Primary Assembly 1493 na NODE_99_length_1438_cov_155.222 unplaced-scaffold na na QJUA01000099.1 = NZ_QJUA01000099.1 Primary Assembly 1438 na NODE_100_length_1402_cov_26.7161 unplaced-scaffold na na QJUA01000100.1 = NZ_QJUA01000100.1 Primary Assembly 1402 na NODE_101_length_1398_cov_16.0087 unplaced-scaffold na na QJUA01000101.1 = NZ_QJUA01000101.1 Primary Assembly 1398 na NODE_102_length_1330_cov_197.099 unplaced-scaffold na na QJUA01000102.1 = NZ_QJUA01000102.1 Primary Assembly 1330 na NODE_103_length_1322_cov_243.465 unplaced-scaffold na na QJUA01000103.1 = NZ_QJUA01000103.1 Primary Assembly 1322 na NODE_104_length_1148_cov_100.237 unplaced-scaffold na na QJUA01000104.1 = NZ_QJUA01000104.1 Primary Assembly 1148 na NODE_105_length_1103_cov_27.4334 unplaced-scaffold na na QJUA01000105.1 = NZ_QJUA01000105.1 Primary Assembly 1103 na NODE_106_length_876_cov_27.0668 unplaced-scaffold na na QJUA01000106.1 = NZ_QJUA01000106.1 Primary Assembly 876 na NODE_107_length_761_cov_7.20505 unplaced-scaffold na na QJUA01000107.1 = NZ_QJUA01000107.1 Primary Assembly 761 na NODE_108_length_743_cov_9.35877 unplaced-scaffold na na QJUA01000108.1 = NZ_QJUA01000108.1 Primary Assembly 743 na NODE_109_length_689_cov_18.573 unplaced-scaffold na na QJUA01000109.1 = NZ_QJUA01000109.1 Primary Assembly 689 na NODE_110_length_543_cov_46.3293 unplaced-scaffold na na QJUA01000110.1 = NZ_QJUA01000110.1 Primary Assembly 543 na NODE_111_length_508_cov_0.973753 unplaced-scaffold na na QJUA01000111.1 = NZ_QJUA01000111.1 Primary Assembly 508 na NODE_112_length_485_cov_0.932961 unplaced-scaffold na na QJUA01000112.1 = NZ_QJUA01000112.1 Primary Assembly 485 na NODE_113_length_484_cov_0.969188 unplaced-scaffold na na QJUA01000113.1 = NZ_QJUA01000113.1 Primary Assembly 484 na NODE_114_length_483_cov_1.03933 unplaced-scaffold na na QJUA01000114.1 = NZ_QJUA01000114.1 Primary Assembly 483 na NODE_115_length_474_cov_1 unplaced-scaffold na na QJUA01000115.1 = NZ_QJUA01000115.1 Primary Assembly 474 na NODE_116_length_465_cov_1.05621 unplaced-scaffold na na QJUA01000116.1 = NZ_QJUA01000116.1 Primary Assembly 465 na NODE_117_length_460_cov_0.915916 unplaced-scaffold na na QJUA01000117.1 = NZ_QJUA01000117.1 Primary Assembly 460 na NODE_118_length_457_cov_1.04242 unplaced-scaffold na na QJUA01000118.1 = NZ_QJUA01000118.1 Primary Assembly 457 na NODE_119_length_454_cov_1.06116 unplaced-scaffold na na QJUA01000119.1 = NZ_QJUA01000119.1 Primary Assembly 454 na NODE_120_length_447_cov_0.953125 unplaced-scaffold na na QJUA01000120.1 = NZ_QJUA01000120.1 Primary Assembly 447 na NODE_121_length_446_cov_0.965517 unplaced-scaffold na na QJUA01000121.1 = NZ_QJUA01000121.1 Primary Assembly 446 na NODE_122_length_437_cov_0.958065 unplaced-scaffold na na QJUA01000122.1 = NZ_QJUA01000122.1 Primary Assembly 437 na NODE_123_length_435_cov_1.00325 unplaced-scaffold na na QJUA01000123.1 = NZ_QJUA01000123.1 Primary Assembly 435 na NODE_124_length_431_cov_0.960526 unplaced-scaffold na na QJUA01000124.1 = NZ_QJUA01000124.1 Primary Assembly 431 na NODE_125_length_392_cov_40.4415 unplaced-scaffold na na QJUA01000125.1 = NZ_QJUA01000125.1 Primary Assembly 392 na NODE_126_length_273_cov_35.4315 unplaced-scaffold na na QJUA01000126.1 = NZ_QJUA01000126.1 Primary Assembly 273 na NODE_127_length_263_cov_43.7647 unplaced-scaffold na na QJUA01000127.1 = NZ_QJUA01000127.1 Primary Assembly 263 na NODE_128_length_260_cov_66.2331 unplaced-scaffold na na QJUA01000128.1 = NZ_QJUA01000128.1 Primary Assembly 260 na NODE_129_length_254_cov_31.8898 unplaced-scaffold na na QJUA01000129.1 = NZ_QJUA01000129.1 Primary Assembly 254 na NODE_130_length_253_cov_47.2143 unplaced-scaffold na na QJUA01000130.1 = NZ_QJUA01000130.1 Primary Assembly 253 na NODE_131_length_241_cov_1.83333 unplaced-scaffold na na QJUA01000131.1 = NZ_QJUA01000131.1 Primary Assembly 241 na NODE_132_length_231_cov_30.7308 unplaced-scaffold na na QJUA01000132.1 = NZ_QJUA01000132.1 Primary Assembly 231 na