# Assembly name: ASM340870v1 # Organism name: Mycobacterium uberis (high G+C Gram-positive bacteria) # Infraspecific name: strain=Jura # Taxid: 2162698 # BioSample: SAMN08894308 # BioProject: PRJNA449298 # Submitter: Ecole Polytechnique Federale de Lausanne # Date: 2018-08-20 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: QAYL01 # Assembly method: MIRA v. 4.9.5_2; SPAdes v. 3.5 # Expected final version: no # Genome coverage: 26.0x # Sequencing technology: Illumina HiSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_003408705.1 # RefSeq assembly accession: GCF_003408705.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003408715.1 GCF_003408715.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name cow2_denovo_c185 unplaced-scaffold na na QAYL01000001.1 = NZ_QAYL01000001.1 Primary Assembly 472717 na cow2_denovo_c221 unplaced-scaffold na na QAYL01000002.1 = NZ_QAYL01000002.1 Primary Assembly 319566 na cow2_denovo_c229 unplaced-scaffold na na QAYL01000003.1 = NZ_QAYL01000003.1 Primary Assembly 66308 na cow2_denovo_c234 unplaced-scaffold na na QAYL01000004.1 = NZ_QAYL01000004.1 Primary Assembly 46741 na cow2_denovo_c235 unplaced-scaffold na na QAYL01000005.1 = NZ_QAYL01000005.1 Primary Assembly 49889 na cow2_denovo_c249 unplaced-scaffold na na QAYL01000006.1 = NZ_QAYL01000006.1 Primary Assembly 289098 na cow2_denovo_c255 unplaced-scaffold na na QAYL01000007.1 = NZ_QAYL01000007.1 Primary Assembly 141115 na cow2_denovo_c257 unplaced-scaffold na na QAYL01000008.1 = NZ_QAYL01000008.1 Primary Assembly 121195 na cow2_denovo_c262 unplaced-scaffold na na QAYL01000009.1 = NZ_QAYL01000009.1 Primary Assembly 112166 na cow2_denovo_c267 unplaced-scaffold na na QAYL01000010.1 = NZ_QAYL01000010.1 Primary Assembly 6252 na cow2_denovo_c272 unplaced-scaffold na na QAYL01000011.1 = NZ_QAYL01000011.1 Primary Assembly 54344 na cow2_denovo_c280 unplaced-scaffold na na QAYL01000012.1 = NZ_QAYL01000012.1 Primary Assembly 110197 na cow2_denovo_c281 unplaced-scaffold na na QAYL01000013.1 = NZ_QAYL01000013.1 Primary Assembly 18760 na cow2_denovo_c282 unplaced-scaffold na na QAYL01000014.1 = NZ_QAYL01000014.1 Primary Assembly 89103 na cow2_denovo_c284 unplaced-scaffold na na QAYL01000015.1 = NZ_QAYL01000015.1 Primary Assembly 226402 na cow2_denovo_c288 unplaced-scaffold na na QAYL01000016.1 = NZ_QAYL01000016.1 Primary Assembly 75603 na cow2_denovo_c289 unplaced-scaffold na na QAYL01000017.1 = NZ_QAYL01000017.1 Primary Assembly 23179 na cow2_denovo_c293 unplaced-scaffold na na QAYL01000018.1 = NZ_QAYL01000018.1 Primary Assembly 82397 na cow2_denovo_c298 unplaced-scaffold na na QAYL01000019.1 = NZ_QAYL01000019.1 Primary Assembly 18327 na cow2_denovo_c305 unplaced-scaffold na na QAYL01000020.1 = NZ_QAYL01000020.1 Primary Assembly 17689 na cow2_denovo_c308 unplaced-scaffold na na QAYL01000021.1 = NZ_QAYL01000021.1 Primary Assembly 37856 na cow2_denovo_c310 unplaced-scaffold na na QAYL01000022.1 = NZ_QAYL01000022.1 Primary Assembly 50979 na cow2_denovo_c313 unplaced-scaffold na na QAYL01000023.1 = NZ_QAYL01000023.1 Primary Assembly 63287 na cow2_denovo_c450 unplaced-scaffold na na QAYL01000024.1 = NZ_QAYL01000024.1 Primary Assembly 59908 na cow2_denovo_c569 unplaced-scaffold na na QAYL01000025.1 = NZ_QAYL01000025.1 Primary Assembly 121366 na cow2_denovo_c579 unplaced-scaffold na na QAYL01000026.1 = NZ_QAYL01000026.1 Primary Assembly 34740 na cow2_denovo_c599 unplaced-scaffold na na QAYL01000027.1 = NZ_QAYL01000027.1 Primary Assembly 88818 na cow2_denovo_c622 unplaced-scaffold na na QAYL01000028.1 = NZ_QAYL01000028.1 Primary Assembly 30753 na cow2_denovo_c630 unplaced-scaffold na na QAYL01000029.1 = NZ_QAYL01000029.1 Primary Assembly 28983 na cow2_denovo_c646 unplaced-scaffold na na QAYL01000030.1 = NZ_QAYL01000030.1 Primary Assembly 33034 na cow2_denovo_c648 unplaced-scaffold na na QAYL01000031.1 = NZ_QAYL01000031.1 Primary Assembly 7536 na cow2_denovo_c725 unplaced-scaffold na na QAYL01000032.1 = NZ_QAYL01000032.1 Primary Assembly 5480 na cow2_denovo_c761 unplaced-scaffold na na QAYL01000033.1 = NZ_QAYL01000033.1 Primary Assembly 19863 na cow2_denovo_c786 unplaced-scaffold na na QAYL01000034.1 = NZ_QAYL01000034.1 Primary Assembly 22289 na cow2_denovo_c1244 unplaced-scaffold na na QAYL01000035.1 = NZ_QAYL01000035.1 Primary Assembly 20043 na cow2_denovo_c1328 unplaced-scaffold na na QAYL01000036.1 = NZ_QAYL01000036.1 Primary Assembly 5935 na cow2_denovo_c1355 unplaced-scaffold na na QAYL01000037.1 = NZ_QAYL01000037.1 Primary Assembly 4865 na cow2_denovo_c1361 unplaced-scaffold na na QAYL01000038.1 = NZ_QAYL01000038.1 Primary Assembly 7633 na cow2_denovo_c1435 unplaced-scaffold na na QAYL01000039.1 = NZ_QAYL01000039.1 Primary Assembly 4164 na cow2_denovo_c1568 unplaced-scaffold na na QAYL01000040.1 = NZ_QAYL01000040.1 Primary Assembly 1034 na cow2_denovo_c1638 unplaced-scaffold na na QAYL01000041.1 = NZ_QAYL01000041.1 Primary Assembly 1761 na cow2_denovo_c1682 unplaced-scaffold na na QAYL01000042.1 = NZ_QAYL01000042.1 Primary Assembly 2755 na cow2_denovo_c2241 unplaced-scaffold na na QAYL01000043.1 = NZ_QAYL01000043.1 Primary Assembly 1553 na cow2_denovo_c2262 unplaced-scaffold na na QAYL01000044.1 = NZ_QAYL01000044.1 Primary Assembly 3414 na cow2_denovo_c3943 unplaced-scaffold na na QAYL01000045.1 = NZ_QAYL01000045.1 Primary Assembly 1239 na cow2_denovo_c5595 unplaced-scaffold na na QAYL01000046.1 = NZ_QAYL01000046.1 Primary Assembly 1037 na cow2_denovo_c1747 unplaced-scaffold na na QAYL01000047.1 = NZ_QAYL01000047.1 Primary Assembly 1513 na NODE_251 unplaced-scaffold na na QAYL01000048.1 = NZ_QAYL01000048.1 Primary Assembly 25234 na NODE_746_1-8233 unplaced-scaffold na na QAYL01000049.1 = NZ_QAYL01000049.1 Primary Assembly 8233 na NODE_52_63265-65339 unplaced-scaffold na na QAYL01000050.1 = NZ_QAYL01000050.1 Primary Assembly 2075 na NODE_473 unplaced-scaffold na na QAYL01000051.1 = NZ_QAYL01000051.1 Primary Assembly 15828 na NODE_263 unplaced-scaffold na na QAYL01000052.1 = NZ_QAYL01000052.1 Primary Assembly 24374 na NODE_167 unplaced-scaffold na na QAYL01000053.1 = NZ_QAYL01000053.1 Primary Assembly 33857 na NODE_836 unplaced-scaffold na na QAYL01000054.1 = NZ_QAYL01000054.1 Primary Assembly 10234 na