# Assembly name: ASM386249v1 # Organism name: Halocatena pleomorpha (euryarchaeotes) # Infraspecific name: strain=SPP-AMP-1 # Taxid: 1785090 # BioSample: SAMN10496973 # BioProject: PRJNA507509 # Submitter: institute of microbial technology # Date: 2018-12-04 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: RRCH01 # Assembly method: CLC genomics workbench v. 10.0.1 # Expected final version: yes # Genome coverage: 100.0x # Sequencing technology: IonTorrent # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_003862495.1 # RefSeq assembly accession: GCF_003862495.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003862545.1 GCF_003862545.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SPP-M1-1.IonXpress_2017_trimmed_contig_1 unplaced-scaffold na na RRCH01000001.1 = NZ_RRCH01000001.1 Primary Assembly 52597 na SPP-M1-1.IonXpress_2017_trimmed_contig_2 unplaced-scaffold na na RRCH01000002.1 = NZ_RRCH01000002.1 Primary Assembly 144676 na SPP-M1-1.IonXpress_2017_trimmed_contig_3 unplaced-scaffold na na RRCH01000003.1 = NZ_RRCH01000003.1 Primary Assembly 467095 na SPP-M1-1.IonXpress_2017_trimmed_contig_4 unplaced-scaffold na na RRCH01000004.1 = NZ_RRCH01000004.1 Primary Assembly 74289 na SPP-M1-1.IonXpress_2017_trimmed_contig_5 unplaced-scaffold na na RRCH01000005.1 = NZ_RRCH01000005.1 Primary Assembly 23817 na SPP-M1-1.IonXpress_2017_trimmed_contig_6 unplaced-scaffold na na RRCH01000006.1 = NZ_RRCH01000006.1 Primary Assembly 44161 na SPP-M1-1.IonXpress_2017_trimmed_contig_7 unplaced-scaffold na na RRCH01000007.1 = NZ_RRCH01000007.1 Primary Assembly 47714 na SPP-M1-1.IonXpress_2017_trimmed_contig_8 unplaced-scaffold na na RRCH01000008.1 = NZ_RRCH01000008.1 Primary Assembly 98837 na SPP-M1-1.IonXpress_2017_trimmed_contig_9 unplaced-scaffold na na RRCH01000009.1 = NZ_RRCH01000009.1 Primary Assembly 59394 na SPP-M1-1.IonXpress_2017_trimmed_contig_10 unplaced-scaffold na na RRCH01000010.1 = NZ_RRCH01000010.1 Primary Assembly 66204 na SPP-M1-1.IonXpress_2017_trimmed_contig_11 unplaced-scaffold na na RRCH01000011.1 = NZ_RRCH01000011.1 Primary Assembly 98229 na SPP-M1-1.IonXpress_2017_trimmed_contig_12 unplaced-scaffold na na RRCH01000012.1 = NZ_RRCH01000012.1 Primary Assembly 86820 na SPP-M1-1.IonXpress_2017_trimmed_contig_13 unplaced-scaffold na na RRCH01000013.1 = NZ_RRCH01000013.1 Primary Assembly 40610 na SPP-M1-1.IonXpress_2017_trimmed_contig_14 unplaced-scaffold na na RRCH01000014.1 = NZ_RRCH01000014.1 Primary Assembly 258095 na SPP-M1-1.IonXpress_2017_trimmed_contig_15 unplaced-scaffold na na RRCH01000015.1 = NZ_RRCH01000015.1 Primary Assembly 28677 na SPP-M1-1.IonXpress_2017_trimmed_contig_16 unplaced-scaffold na na RRCH01000016.1 = NZ_RRCH01000016.1 Primary Assembly 49060 na SPP-M1-1.IonXpress_2017_trimmed_contig_17 unplaced-scaffold na na RRCH01000017.1 = NZ_RRCH01000017.1 Primary Assembly 97815 na SPP-M1-1.IonXpress_2017_trimmed_contig_18 unplaced-scaffold na na RRCH01000018.1 = NZ_RRCH01000018.1 Primary Assembly 23763 na SPP-M1-1.IonXpress_2017_trimmed_contig_19 unplaced-scaffold na na RRCH01000019.1 = NZ_RRCH01000019.1 Primary Assembly 81772 na SPP-M1-1.IonXpress_2017_trimmed_contig_20 unplaced-scaffold na na RRCH01000020.1 = NZ_RRCH01000020.1 Primary Assembly 15767 na SPP-M1-1.IonXpress_2017_trimmed_contig_21 unplaced-scaffold na na RRCH01000021.1 = NZ_RRCH01000021.1 Primary Assembly 136980 na SPP-M1-1.IonXpress_2017_trimmed_contig_22 unplaced-scaffold na na RRCH01000022.1 = NZ_RRCH01000022.1 Primary Assembly 161765 na SPP-M1-1.IonXpress_2017_trimmed_contig_23 unplaced-scaffold na na RRCH01000023.1 = NZ_RRCH01000023.1 Primary Assembly 131584 na SPP-M1-1.IonXpress_2017_trimmed_contig_24 unplaced-scaffold na na RRCH01000024.1 = NZ_RRCH01000024.1 Primary Assembly 76497 na SPP-M1-1.IonXpress_2017_trimmed_contig_25 unplaced-scaffold na na RRCH01000025.1 = NZ_RRCH01000025.1 Primary Assembly 21451 na SPP-M1-1.IonXpress_2017_trimmed_contig_26 unplaced-scaffold na na RRCH01000026.1 = NZ_RRCH01000026.1 Primary Assembly 30877 na SPP-M1-1.IonXpress_2017_trimmed_contig_27 unplaced-scaffold na na RRCH01000027.1 = NZ_RRCH01000027.1 Primary Assembly 49649 na SPP-M1-1.IonXpress_2017_trimmed_contig_28 unplaced-scaffold na na RRCH01000028.1 = NZ_RRCH01000028.1 Primary Assembly 275506 na SPP-M1-1.IonXpress_2017_trimmed_contig_29 unplaced-scaffold na na RRCH01000029.1 = NZ_RRCH01000029.1 Primary Assembly 157152 na SPP-M1-1.IonXpress_2017_trimmed_contig_30 unplaced-scaffold na na RRCH01000030.1 = NZ_RRCH01000030.1 Primary Assembly 25130 na SPP-M1-1.IonXpress_2017_trimmed_contig_31 unplaced-scaffold na na RRCH01000031.1 = NZ_RRCH01000031.1 Primary Assembly 116484 na SPP-M1-1.IonXpress_2017_trimmed_contig_32 unplaced-scaffold na na RRCH01000032.1 = NZ_RRCH01000032.1 Primary Assembly 36716 na SPP-M1-1.IonXpress_2017_trimmed_contig_33 unplaced-scaffold na na RRCH01000033.1 = NZ_RRCH01000033.1 Primary Assembly 64587 na SPP-M1-1.IonXpress_2017_trimmed_contig_34 unplaced-scaffold na na RRCH01000034.1 = NZ_RRCH01000034.1 Primary Assembly 22523 na SPP-M1-1.IonXpress_2017_trimmed_contig_35 unplaced-scaffold na na RRCH01000035.1 = NZ_RRCH01000035.1 Primary Assembly 27446 na SPP-M1-1.IonXpress_2017_trimmed_contig_36 unplaced-scaffold na na RRCH01000036.1 = NZ_RRCH01000036.1 Primary Assembly 45551 na SPP-M1-1.IonXpress_2017_trimmed_contig_37 unplaced-scaffold na na RRCH01000037.1 = NZ_RRCH01000037.1 Primary Assembly 41657 na SPP-M1-1.IonXpress_2017_trimmed_contig_38 unplaced-scaffold na na RRCH01000038.1 = NZ_RRCH01000038.1 Primary Assembly 42949 na SPP-M1-1.IonXpress_2017_trimmed_contig_39 unplaced-scaffold na na RRCH01000039.1 = NZ_RRCH01000039.1 Primary Assembly 37232 na SPP-M1-1.IonXpress_2017_trimmed_contig_40 unplaced-scaffold na na RRCH01000040.1 = NZ_RRCH01000040.1 Primary Assembly 61423 na SPP-M1-1.IonXpress_2017_trimmed_contig_41 unplaced-scaffold na na RRCH01000041.1 = NZ_RRCH01000041.1 Primary Assembly 18294 na SPP-M1-1.IonXpress_2017_trimmed_contig_42 unplaced-scaffold na na RRCH01000042.1 = NZ_RRCH01000042.1 Primary Assembly 51534 na SPP-M1-1.IonXpress_2017_trimmed_contig_43 unplaced-scaffold na na RRCH01000043.1 = NZ_RRCH01000043.1 Primary Assembly 1858 na SPP-M1-1.IonXpress_2017_trimmed_contig_44 unplaced-scaffold na na RRCH01000044.1 = NZ_RRCH01000044.1 Primary Assembly 11108 na SPP-M1-1.IonXpress_2017_trimmed_contig_45 unplaced-scaffold na na RRCH01000045.1 = NZ_RRCH01000045.1 Primary Assembly 33344 na SPP-M1-1.IonXpress_2017_trimmed_contig_46 unplaced-scaffold na na RRCH01000046.1 = NZ_RRCH01000046.1 Primary Assembly 16880 na SPP-M1-1.IonXpress_2017_trimmed_contig_47 unplaced-scaffold na na RRCH01000047.1 = NZ_RRCH01000047.1 Primary Assembly 13311 na SPP-M1-1.IonXpress_2017_trimmed_contig_48 unplaced-scaffold na na RRCH01000048.1 = NZ_RRCH01000048.1 Primary Assembly 11600 na SPP-M1-1.IonXpress_2017_trimmed_contig_49 unplaced-scaffold na na RRCH01000049.1 = NZ_RRCH01000049.1 Primary Assembly 20373 na SPP-M1-1.IonXpress_2017_trimmed_contig_50 unplaced-scaffold na na RRCH01000050.1 = NZ_RRCH01000050.1 Primary Assembly 10788 na SPP-M1-1.IonXpress_2017_trimmed_contig_51 unplaced-scaffold na na RRCH01000051.1 = NZ_RRCH01000051.1 Primary Assembly 3889 na SPP-M1-1.IonXpress_2017_trimmed_contig_52 unplaced-scaffold na na RRCH01000052.1 = NZ_RRCH01000052.1 Primary Assembly 13878 na SPP-M1-1.IonXpress_2017_trimmed_contig_53 unplaced-scaffold na na RRCH01000053.1 = NZ_RRCH01000053.1 Primary Assembly 3200 na SPP-M1-1.IonXpress_2017_trimmed_contig_54 unplaced-scaffold na na RRCH01000054.1 = NZ_RRCH01000054.1 Primary Assembly 10472 na SPP-M1-1.IonXpress_2017_trimmed_contig_55 unplaced-scaffold na na RRCH01000055.1 = NZ_RRCH01000055.1 Primary Assembly 1893 na SPP-M1-1.IonXpress_2017_trimmed_contig_56 unplaced-scaffold na na RRCH01000056.1 = NZ_RRCH01000056.1 Primary Assembly 1425 na SPP-M1-1.IonXpress_2017_trimmed_contig_57 unplaced-scaffold na na RRCH01000057.1 = NZ_RRCH01000057.1 Primary Assembly 1716 na SPP-M1-1.IonXpress_2017_trimmed_contig_58 unplaced-scaffold na na RRCH01000058.1 = NZ_RRCH01000058.1 Primary Assembly 2099 na SPP-M1-1.IonXpress_2017_trimmed_contig_59 unplaced-scaffold na na RRCH01000059.1 = NZ_RRCH01000059.1 Primary Assembly 1512 na SPP-M1-1.IonXpress_2017_trimmed_contig_60 unplaced-scaffold na na RRCH01000060.1 = NZ_RRCH01000060.1 Primary Assembly 1000 na SPP-M1-1.IonXpress_2017_trimmed_contig_61 unplaced-scaffold na na RRCH01000061.1 = NZ_RRCH01000061.1 Primary Assembly 1964 na