# Assembly name:  bTaeGut1_v1.p
# Organism name:  Taeniopygia guttata (zebra finch)
# Isolate:  Black17
# Sex:  male
# Taxid:          59729
# BioSample:      SAMN02981239
# BioProject:     PRJNA489098
# Submitter:      Vertebrate Genomes Project
# Date:           2019-05-16
# Assembly type:  haploid
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    RRCB01
# Expected final version: no
# Genome coverage: 88.2x
# Sequencing technology: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics HiC
# GenBank assembly accession: GCA_003957565.2
# RefSeq assembly accession: GCF_003957565.1
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCA_003957525.1 (alternate pseudohaplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_003957595.1	GCF_003957595.1	Primary Assembly
## GCA_005458605.1	GCF_000055475.1	non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
Super_Scaffold_1	assembled-molecule	1	Chromosome	CM012081.1	=	NC_044211.1	Primary Assembly	114557415	na
Super_Scaffold_1A	assembled-molecule	1A	Chromosome	CM012082.1	=	NC_044212.1	Primary Assembly	70430603	na
Super_Scaffold_2	assembled-molecule	2	Chromosome	CM012083.1	=	NC_044213.1	Primary Assembly	150688799	na
Super_Scaffold_3	assembled-molecule	3	Chromosome	CM012084.1	=	NC_044214.1	Primary Assembly	113228359	na
Super_Scaffold_4	assembled-molecule	4	Chromosome	CM012085.1	=	NC_044215.1	Primary Assembly	71552918	na
Super_Scaffold_4A	assembled-molecule	4A	Chromosome	CM012086.1	=	NC_044216.1	Primary Assembly	19824313	na
Super_Scaffold_5	assembled-molecule	5	Chromosome	CM012087.1	=	NC_044217.1	Primary Assembly	62005366	na
Super_Scaffold_6	assembled-molecule	6	Chromosome	CM012088.1	=	NC_044218.1	Primary Assembly	35665034	na
Super_Scaffold_7	assembled-molecule	7	Chromosome	CM012089.1	=	NC_044219.1	Primary Assembly	38060014	na
Super_Scaffold_8	assembled-molecule	8	Chromosome	CM012090.1	=	NC_044220.1	Primary Assembly	32610028	na
Super_Scaffold_9	assembled-molecule	9	Chromosome	CM012091.1	=	NC_044221.1	Primary Assembly	25575665	na
Super_Scaffold_10	assembled-molecule	10	Chromosome	CM012092.1	=	NC_044222.1	Primary Assembly	22017011	na
Super_Scaffold_11	assembled-molecule	11	Chromosome	CM012093.1	=	NC_044223.1	Primary Assembly	21012354	na
Super_Scaffold_12	assembled-molecule	12	Chromosome	CM012094.1	=	NC_044224.1	Primary Assembly	20435652	na
Super_Scaffold_13	assembled-molecule	13	Chromosome	CM012095.1	=	NC_044225.1	Primary Assembly	18281482	na
Super_Scaffold_14	assembled-molecule	14	Chromosome	CM012096.1	=	NC_044226.1	Primary Assembly	16673467	na
Super_Scaffold_15	assembled-molecule	15	Chromosome	CM012097.1	=	NC_044227.1	Primary Assembly	14326562	na
Super_Scaffold_16	assembled-molecule	16	Chromosome	CM012098.1	=	NC_044228.1	Primary Assembly	1219933	na
Super_Scaffold_17	assembled-molecule	17	Chromosome	CM012099.1	=	NC_044229.1	Primary Assembly	11687202	na
Super_Scaffold_18	assembled-molecule	18	Chromosome	CM012100.1	=	NC_044230.1	Primary Assembly	11044519	na
Super_Scaffold_19	assembled-molecule	19	Chromosome	CM012101.1	=	NC_044231.1	Primary Assembly	8580906	na
Super_Scaffold_20	assembled-molecule	20	Chromosome	CM012102.1	=	NC_044232.1	Primary Assembly	15678767	na
Super_Scaffold_21	assembled-molecule	21	Chromosome	CM012103.1	=	NC_044233.1	Primary Assembly	8891563	na
Super_Scaffold_22	assembled-molecule	22	Chromosome	CM012104.1	=	NC_044234.1	Primary Assembly	5497289	na
Super_Scaffold_23	assembled-molecule	23	Chromosome	CM012105.1	=	NC_044235.1	Primary Assembly	6829922	na
Super_Scaffold_24	assembled-molecule	24	Chromosome	CM012106.1	=	NC_044236.1	Primary Assembly	7666385	na
Super_Scaffold_25	assembled-molecule	25	Chromosome	CM012107.1	=	NC_044237.1	Primary Assembly	3022303	na
Super_Scaffold_26	assembled-molecule	26	Chromosome	CM012108.1	=	NC_044238.1	Primary Assembly	6859188	na
Super_Scaffold_27	assembled-molecule	27	Chromosome	CM012110.1	=	NC_044239.1	Primary Assembly	5426597	na
Super_Scaffold_28	assembled-molecule	28	Chromosome	CM012112.1	=	NC_044240.1	Primary Assembly	6094608	na
Super_Scaffold_Z	assembled-molecule	Z	Chromosome	CM012113.1	=	NC_044241.1	Primary Assembly	75459706	na
Super_Scaffold_29	assembled-molecule	29	Chromosome	CM012109.1	=	NC_044242.1	Primary Assembly	4210262	na
scaffold_343_arrow_ctg1	assembled-molecule	30	Chromosome	CM012111.1	=	NC_044243.1	Primary Assembly	6068150	na
scaffold_100_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000033.1	=	NW_022045284.1	Primary Assembly	347	na
scaffold_103_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000034.1	=	NW_022045285.1	Primary Assembly	27675	na
scaffold_108_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000035.1	=	NW_022045286.1	Primary Assembly	20671	na
scaffold_10_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000036.1	=	NW_022045287.1	Primary Assembly	313178	na
scaffold_110_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000037.1	=	NW_022045288.1	Primary Assembly	22250	na
scaffold_124_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000038.1	=	NW_022045289.1	Primary Assembly	208897	na
scaffold_12_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000039.1	=	NW_022045290.1	Primary Assembly	33162	na
scaffold_134_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000040.1	=	NW_022045291.1	Primary Assembly	39746	na
scaffold_135_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000041.1	=	NW_022045292.1	Primary Assembly	3082989	na
scaffold_140_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000042.1	=	NW_022045293.1	Primary Assembly	878752	na
scaffold_142_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000043.1	=	NW_022045294.1	Primary Assembly	49856	na
scaffold_143_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000044.1	=	NW_022045295.1	Primary Assembly	48318	na
scaffold_145_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000045.1	=	NW_022045296.1	Primary Assembly	75061	na
scaffold_152_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000046.1	=	NW_022045297.1	Primary Assembly	20396	na
scaffold_157_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000047.1	=	NW_022045298.1	Primary Assembly	51730	na
scaffold_161_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000048.1	=	NW_022045299.1	Primary Assembly	372589	na
scaffold_163_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000049.1	=	NW_022045300.1	Primary Assembly	54534	na
scaffold_165_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000050.1	=	NW_022045301.1	Primary Assembly	33826	na
scaffold_16_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000051.1	=	NW_022045302.1	Primary Assembly	147580	na
scaffold_171_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000052.1	=	NW_022045303.1	Primary Assembly	23971	na
scaffold_174_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000053.1	=	NW_022045304.1	Primary Assembly	84313	na
scaffold_178_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000054.1	=	NW_022045305.1	Primary Assembly	691926	na
scaffold_181_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000055.1	=	NW_022045306.1	Primary Assembly	1587672	na
scaffold_188_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000056.1	=	NW_022045307.1	Primary Assembly	653019	na
scaffold_189_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000057.1	=	NW_022045308.1	Primary Assembly	13177	na
scaffold_190_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000058.1	=	NW_022045309.1	Primary Assembly	12770	na
scaffold_191_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000059.1	=	NW_022045310.1	Primary Assembly	115688	na
scaffold_195_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000060.1	=	NW_022045311.1	Primary Assembly	24018	na
scaffold_197_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000061.1	=	NW_022045312.1	Primary Assembly	79259	na
scaffold_202_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000062.1	=	NW_022045313.1	Primary Assembly	44209	na
scaffold_206_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000063.1	=	NW_022045314.1	Primary Assembly	672335	na
scaffold_21_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000064.1	=	NW_022045315.1	Primary Assembly	447051	na
scaffold_220_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000065.1	=	NW_022045316.1	Primary Assembly	37254	na
scaffold_221_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000066.1	=	NW_022045317.1	Primary Assembly	40729	na
scaffold_223_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000067.1	=	NW_022045318.1	Primary Assembly	31091	na
scaffold_226_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000068.1	=	NW_022045319.1	Primary Assembly	121244	na
scaffold_228_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000069.1	=	NW_022045320.1	Primary Assembly	195830	na
scaffold_229_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000070.1	=	NW_022045321.1	Primary Assembly	28873	na
scaffold_234_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000071.1	=	NW_022045322.1	Primary Assembly	59977	na
scaffold_239_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000072.1	=	NW_022045323.1	Primary Assembly	23686	na
scaffold_242_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000073.1	=	NW_022045324.1	Primary Assembly	23556	na
scaffold_245_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000074.1	=	NW_022045325.1	Primary Assembly	21755	na
scaffold_253_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000075.1	=	NW_022045326.1	Primary Assembly	91878	na
scaffold_255_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000076.1	=	NW_022045327.1	Primary Assembly	58400	na
scaffold_256_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000077.1	=	NW_022045328.1	Primary Assembly	113164	na
scaffold_257_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000078.1	=	NW_022045329.1	Primary Assembly	57278	na
scaffold_258_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000079.1	=	NW_022045330.1	Primary Assembly	30335	na
scaffold_25_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000080.1	=	NW_022045331.1	Primary Assembly	23272	na
scaffold_264_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000081.1	=	NW_022045332.1	Primary Assembly	35583	na
scaffold_271_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000082.1	=	NW_022045333.1	Primary Assembly	51615	na
scaffold_273_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000083.1	=	NW_022045334.1	Primary Assembly	54598	na
scaffold_276_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000084.1	=	NW_022045335.1	Primary Assembly	41919	na
scaffold_281_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000085.1	=	NW_022045336.1	Primary Assembly	1486	na
scaffold_284_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000086.1	=	NW_022045337.1	Primary Assembly	135223	na
scaffold_288_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000087.1	=	NW_022045338.1	Primary Assembly	191067	na
scaffold_289_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000088.1	=	NW_022045339.1	Primary Assembly	1678629	na
scaffold_290_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000089.1	=	NW_022045340.1	Primary Assembly	20150	na
scaffold_291_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000090.1	=	NW_022045341.1	Primary Assembly	2911363	na
scaffold_292_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000091.1	=	NW_022045342.1	Primary Assembly	115883	na
scaffold_2_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000092.1	=	NW_022045343.1	Primary Assembly	39859	na
scaffold_300_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000093.1	=	NW_022045344.1	Primary Assembly	131254	na
scaffold_305_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000094.1	=	NW_022045345.1	Primary Assembly	28559	na
scaffold_306_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000095.1	=	NW_022045346.1	Primary Assembly	25261	na
scaffold_309_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000096.1	=	NW_022045347.1	Primary Assembly	57871	na
scaffold_30_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000097.1	=	NW_022045348.1	Primary Assembly	32021	na
scaffold_315_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000098.1	=	NW_022045349.1	Primary Assembly	241011	na
scaffold_322_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000099.1	=	NW_022045350.1	Primary Assembly	1283594	na
scaffold_328_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000100.1	=	NW_022045351.1	Primary Assembly	2037630	na
scaffold_32_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000101.1	=	NW_022045352.1	Primary Assembly	53175	na
scaffold_332_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000102.1	=	NW_022045353.1	Primary Assembly	37383	na
scaffold_339_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000103.1	=	NW_022045354.1	Primary Assembly	38763	na
scaffold_341_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000104.1	=	NW_022045355.1	Primary Assembly	66124	na
scaffold_342_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000105.1	=	NW_022045356.1	Primary Assembly	179036	na
scaffold_348_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000107.1	=	NW_022045357.1	Primary Assembly	1556942	na
scaffold_354_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000108.1	=	NW_022045358.1	Primary Assembly	28484	na
scaffold_355_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000109.1	=	NW_022045359.1	Primary Assembly	1584006	na
scaffold_35_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000110.1	=	NW_022045360.1	Primary Assembly	32808	na
scaffold_362_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000111.1	=	NW_022045361.1	Primary Assembly	35646	na
scaffold_369_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000112.1	=	NW_022045362.1	Primary Assembly	736808	na
scaffold_372_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000113.1	=	NW_022045363.1	Primary Assembly	45567	na
scaffold_380_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000114.1	=	NW_022045364.1	Primary Assembly	20784	na
scaffold_381_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000115.1	=	NW_022045365.1	Primary Assembly	24037	na
scaffold_386_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000116.1	=	NW_022045366.1	Primary Assembly	58689	na
scaffold_387_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000117.1	=	NW_022045367.1	Primary Assembly	28871	na
scaffold_391_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000118.1	=	NW_022045368.1	Primary Assembly	22516	na
scaffold_392_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000119.1	=	NW_022045369.1	Primary Assembly	34055	na
scaffold_395_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000120.1	=	NW_022045370.1	Primary Assembly	69816	na
scaffold_396_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000121.1	=	NW_022045371.1	Primary Assembly	36666	na
scaffold_39_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000122.1	=	NW_022045372.1	Primary Assembly	85903	na
scaffold_40_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000123.1	=	NW_022045373.1	Primary Assembly	189721	na
scaffold_43_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000124.1	=	NW_022045374.1	Primary Assembly	842684	na
scaffold_46_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000125.1	=	NW_022045375.1	Primary Assembly	42983	na
scaffold_49_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000126.1	=	NW_022045376.1	Primary Assembly	37151	na
scaffold_51_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000127.1	=	NW_022045377.1	Primary Assembly	152256	na
scaffold_55_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000128.1	=	NW_022045378.1	Primary Assembly	104695	na
scaffold_58_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000129.1	=	NW_022045379.1	Primary Assembly	495335	na
scaffold_60_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000130.1	=	NW_022045380.1	Primary Assembly	49935	na
scaffold_61_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000131.1	=	NW_022045381.1	Primary Assembly	21213	na
scaffold_78_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000132.1	=	NW_022045382.1	Primary Assembly	27188	na
scaffold_84_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000133.1	=	NW_022045383.1	Primary Assembly	38097	na
scaffold_96_arrow_ctg1	unplaced-scaffold	na	na	RRCB01000134.1	=	NW_022045384.1	Primary Assembly	31738	na
MT	assembled-molecule	MT	Mitochondrion	na	<>	NC_007897.1	non-nuclear	16853	chrM
bTaeGut1_MT	assembled-molecule	MT	Mitochondrion	CM016613.1	<>	na	non-nuclear	16853	na