# Assembly name: mPhyDis1_v1.p # Organism name: Phyllostomus discolor (pale spear-nosed bat) # Isolate: MPI-MPIP mPhyDis1 # Sex: male # Taxid: 89673 # BioSample: SAMN09948786 # BioProject: PRJNA489141 # Submitter: Vertebrate Genomes Project # Date: 2019-02-07 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: RXPA01 # Assembly method: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve BspQI/BssSI v. 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10. # Expected final version: no # Genome coverage: 65.8x # Sequencing technology: PacBio Sequel; 10X Genomics linked reads; Bioanano Genomics 2 enzyme; Arima Genomics HiC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_004126475.2 # RefSeq assembly accession: GCF_004126475.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_004115245.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_004126485.1 GCF_004126485.1 Primary Assembly ## GCA_005460155.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_scaffold_11 assembled-molecule 1 Chromosome CM014254.1 = NC_040903.1 Primary Assembly 205573101 na Super_scaffold_2 assembled-molecule 2 Chromosome CM014255.1 = NC_040904.1 Primary Assembly 110241909 na scaffold_252_arrow_ctg1 assembled-molecule 3 Chromosome CM014256.1 = NC_040905.1 Primary Assembly 210685461 na Super_scaffold_9 assembled-molecule 4 Chromosome CM014257.1 = NC_040906.1 Primary Assembly 200289552 na scaffold_134_arrow_ctg2 assembled-molecule 5 Chromosome CM014258.1 = NC_040907.1 Primary Assembly 175149017 na Super_scaffold_6 assembled-molecule 6 Chromosome CM014259.1 = NC_040908.1 Primary Assembly 170176978 na Super_scaffold_4 assembled-molecule 7 Chromosome CM014260.1 = NC_040909.1 Primary Assembly 91367972 na Super_scaffold_8 assembled-molecule 8 Chromosome CM014261.1 = NC_040910.1 Primary Assembly 96947405 na scaffold_244_arrow_ctg2 assembled-molecule 9 Chromosome CM014262.1 = NC_040911.1 Primary Assembly 107516943 na Super_scaffold_7 assembled-molecule 10 Chromosome CM014263.1 = NC_040912.1 Primary Assembly 105682027 na Super_scaffold_3 assembled-molecule 11 Chromosome CM014264.1 = NC_040913.1 Primary Assembly 94649528 na scaffold_142_arrow_ctg1 assembled-molecule 12 Chromosome CM014265.1 = NC_040914.1 Primary Assembly 94380556 na Super_scaffold_10 assembled-molecule 13 Chromosome CM014266.1 = NC_040915.1 Primary Assembly 75523858 na scaffold_260_arrow_ctg1 assembled-molecule 14 Chromosome CM014267.1 = NC_040916.1 Primary Assembly 31413009 na scaffold_110_arrow_ctg1 assembled-molecule 15 Chromosome CM014268.1 = NC_040917.1 Primary Assembly 26662044 na scaffold_108_arrow_ctg2 assembled-molecule 16 Chromosome CM014269.1 = NC_040918.1 Primary Assembly 24177217 na scaffold_81_arrow_ctg1 unlocalized-scaffold 1 Chromosome RXPA01000126.1 = NW_021126246.1 Primary Assembly 9314915 na Super_scaffold_1 unlocalized-scaffold 2 Chromosome RXPA01000007.1 = NW_021126247.1 Primary Assembly 102702574 na scaffold_147_arrow_ctg1 unlocalized-scaffold 4 Chromosome RXPA01000036.1 = NW_021126248.1 Primary Assembly 5151123 na Super_scaffold_5 unlocalized-scaffold 7 Chromosome RXPA01000013.1 = NW_021126249.1 Primary Assembly 49541664 na scaffold_244_arrow_ctg1 unlocalized-scaffold 8 Chromosome RXPA01000080.1 = NW_021126250.1 Primary Assembly 18387851 na scaffold_248_arrow_ctg1 unlocalized-scaffold 14 Chromosome RXPA01000084.1 = NW_021126251.1 Primary Assembly 30311587 na scaffold_248_arrow_ctg2 unlocalized-scaffold 14 Chromosome RXPA01000085.1 = NW_021126252.1 Primary Assembly 12619041 na scaffold_110_arrow_ctg4 unlocalized-scaffold 15 Chromosome RXPA01000014.1 = NW_021126253.1 Primary Assembly 21894192 na scaffold_100_arrow_ctg1 unplaced-scaffold na na RXPA01000001.1 = NW_021126254.1 Primary Assembly 57015 na scaffold_101_arrow_ctg1 unplaced-scaffold na na RXPA01000002.1 = NW_021126255.1 Primary Assembly 45375 na scaffold_104_arrow_ctg1 unplaced-scaffold na na RXPA01000003.1 = NW_021126256.1 Primary Assembly 1119097 na scaffold_105_arrow_ctg1 unplaced-scaffold na na RXPA01000004.1 = NW_021126257.1 Primary Assembly 59143 na scaffold_106_arrow_ctg1 unplaced-scaffold na na RXPA01000005.1 = NW_021126258.1 Primary Assembly 33490 na scaffold_107_arrow_ctg1 unplaced-scaffold na na RXPA01000006.1 = NW_021126259.1 Primary Assembly 36013 na scaffold_111_arrow_ctg1 unplaced-scaffold na na RXPA01000016.1 = NW_021126260.1 Primary Assembly 23692 na scaffold_113_arrow_ctg1 unplaced-scaffold na na RXPA01000017.1 = NW_021126261.1 Primary Assembly 68107 na scaffold_114_arrow_ctg1 unplaced-scaffold na na RXPA01000018.1 = NW_021126262.1 Primary Assembly 34876 na scaffold_116_arrow_ctg1 unplaced-scaffold na na RXPA01000019.1 = NW_021126263.1 Primary Assembly 20601 na scaffold_118_arrow_ctg1 unplaced-scaffold na na RXPA01000020.1 = NW_021126264.1 Primary Assembly 47903 na scaffold_119_arrow_ctg1 unplaced-scaffold na na RXPA01000021.1 = NW_021126265.1 Primary Assembly 35732 na scaffold_11_arrow_ctg1 unplaced-scaffold na na RXPA01000022.1 = NW_021126266.1 Primary Assembly 141723 na scaffold_123_arrow_ctg1 unplaced-scaffold na na RXPA01000023.1 = NW_021126267.1 Primary Assembly 123488 na scaffold_124_arrow_ctg1 unplaced-scaffold na na RXPA01000024.1 = NW_021126268.1 Primary Assembly 196454 na scaffold_127_arrow_ctg1 unplaced-scaffold na na RXPA01000025.1 = NW_021126269.1 Primary Assembly 27921 na scaffold_128_arrow_ctg1 unplaced-scaffold na na RXPA01000026.1 = NW_021126270.1 Primary Assembly 31917 na scaffold_133_arrow_ctg1 unplaced-scaffold na na RXPA01000027.1 = NW_021126271.1 Primary Assembly 31548 na scaffold_135_arrow_ctg1 unplaced-scaffold na na RXPA01000030.1 = NW_021126272.1 Primary Assembly 24442 na scaffold_137_arrow_ctg1 unplaced-scaffold na na RXPA01000031.1 = NW_021126273.1 Primary Assembly 20529 na scaffold_138_arrow_ctg1 unplaced-scaffold na na RXPA01000032.1 = NW_021126274.1 Primary Assembly 89244 na scaffold_139_arrow_ctg1 unplaced-scaffold na na RXPA01000033.1 = NW_021126275.1 Primary Assembly 76087 na scaffold_140_arrow_ctg1 unplaced-scaffold na na RXPA01000034.1 = NW_021126276.1 Primary Assembly 1057057 na scaffold_150_arrow_ctg1 unplaced-scaffold na na RXPA01000037.1 = NW_021126277.1 Primary Assembly 28926 na scaffold_152_arrow_ctg1 unplaced-scaffold na na RXPA01000038.1 = NW_021126278.1 Primary Assembly 21147 na scaffold_153_arrow_ctg1 unplaced-scaffold na na RXPA01000039.1 = NW_021126279.1 Primary Assembly 27270 na scaffold_157_arrow_ctg1 unplaced-scaffold na na RXPA01000040.1 = NW_021126280.1 Primary Assembly 41423 na scaffold_15_arrow_ctg1 unplaced-scaffold na na RXPA01000041.1 = NW_021126281.1 Primary Assembly 31156 na scaffold_161_arrow_ctg1 unplaced-scaffold na na RXPA01000042.1 = NW_021126282.1 Primary Assembly 485101 na scaffold_164_arrow_ctg1 unplaced-scaffold na na RXPA01000043.1 = NW_021126283.1 Primary Assembly 3718288 na scaffold_166_arrow_ctg1 unplaced-scaffold na na RXPA01000044.1 = NW_021126284.1 Primary Assembly 55349 na scaffold_167_arrow_ctg1 unplaced-scaffold na na RXPA01000045.1 = NW_021126285.1 Primary Assembly 126111 na scaffold_168_arrow_ctg1 unplaced-scaffold na na RXPA01000046.1 = NW_021126286.1 Primary Assembly 49744 na scaffold_169_arrow_ctg1 unplaced-scaffold na na RXPA01000047.1 = NW_021126287.1 Primary Assembly 35546 na scaffold_174_arrow_ctg1 unplaced-scaffold na na RXPA01000048.1 = NW_021126288.1 Primary Assembly 68279 na scaffold_175_arrow_ctg2 unplaced-scaffold na na RXPA01000050.1 = NW_021126289.1 Primary Assembly 6232321 na scaffold_177_arrow_ctg1 unplaced-scaffold na na RXPA01000051.1 = NW_021126290.1 Primary Assembly 26800 na scaffold_181_arrow_ctg1 unplaced-scaffold na na RXPA01000052.1 = NW_021126291.1 Primary Assembly 156074 na scaffold_183_arrow_ctg2 unplaced-scaffold na na RXPA01000054.1 = NW_021126292.1 Primary Assembly 939043 na scaffold_185_arrow_ctg1 unplaced-scaffold na na RXPA01000055.1 = NW_021126293.1 Primary Assembly 30469 na scaffold_190_arrow_ctg1 unplaced-scaffold na na RXPA01000056.1 = NW_021126294.1 Primary Assembly 33541 na scaffold_191_arrow_ctg1 unplaced-scaffold na na RXPA01000057.1 = NW_021126295.1 Primary Assembly 39136 na scaffold_195_arrow_ctg1 unplaced-scaffold na na RXPA01000058.1 = NW_021126296.1 Primary Assembly 46682 na scaffold_199_arrow_ctg1 unplaced-scaffold na na RXPA01000059.1 = NW_021126297.1 Primary Assembly 35482 na scaffold_206_arrow_ctg1 unplaced-scaffold na na RXPA01000061.1 = NW_021126298.1 Primary Assembly 202203 na scaffold_207_arrow_ctg1 unplaced-scaffold na na RXPA01000062.1 = NW_021126299.1 Primary Assembly 28618 na scaffold_20_arrow_ctg1 unplaced-scaffold na na RXPA01000063.1 = NW_021126300.1 Primary Assembly 26304 na scaffold_210_arrow_ctg1 unplaced-scaffold na na RXPA01000064.1 = NW_021126301.1 Primary Assembly 24599 na scaffold_212_arrow_ctg1 unplaced-scaffold na na RXPA01000065.1 = NW_021126302.1 Primary Assembly 36187 na scaffold_215_arrow_ctg1 unplaced-scaffold na na RXPA01000066.1 = NW_021126303.1 Primary Assembly 29717 na scaffold_219_arrow_ctg1 unplaced-scaffold na na RXPA01000067.1 = NW_021126304.1 Primary Assembly 33603 na scaffold_221_arrow_ctg1 unplaced-scaffold na na RXPA01000068.1 = NW_021126305.1 Primary Assembly 1099401 na scaffold_222_arrow_ctg1 unplaced-scaffold na na RXPA01000069.1 = NW_021126306.1 Primary Assembly 24796 na scaffold_223_arrow_ctg1 unplaced-scaffold na na RXPA01000070.1 = NW_021126307.1 Primary Assembly 223466 na scaffold_226_arrow_ctg1 unplaced-scaffold na na RXPA01000071.1 = NW_021126308.1 Primary Assembly 50830 na scaffold_227_arrow_ctg1 unplaced-scaffold na na RXPA01000072.1 = NW_021126309.1 Primary Assembly 29043 na scaffold_228_arrow_ctg1 unplaced-scaffold na na RXPA01000073.1 = NW_021126310.1 Primary Assembly 25942 na scaffold_232_arrow_ctg1 unplaced-scaffold na na RXPA01000074.1 = NW_021126311.1 Primary Assembly 407212 na scaffold_235_arrow_ctg1 unplaced-scaffold na na RXPA01000075.1 = NW_021126312.1 Primary Assembly 58353 na scaffold_237_arrow_ctg1 unplaced-scaffold na na RXPA01000076.1 = NW_021126313.1 Primary Assembly 33812 na scaffold_238_arrow_ctg1 unplaced-scaffold na na RXPA01000077.1 = NW_021126314.1 Primary Assembly 39370 na scaffold_239_arrow_ctg1 unplaced-scaffold na na RXPA01000078.1 = NW_021126315.1 Primary Assembly 30351 na scaffold_23_arrow_ctg1 unplaced-scaffold na na RXPA01000079.1 = NW_021126316.1 Primary Assembly 41059 na scaffold_246_arrow_ctg1 unplaced-scaffold na na RXPA01000083.1 = NW_021126317.1 Primary Assembly 32945 na scaffold_249_arrow_ctg1 unplaced-scaffold na na RXPA01000086.1 = NW_021126318.1 Primary Assembly 24488 na scaffold_254_arrow_ctg1 unplaced-scaffold na na RXPA01000088.1 = NW_021126319.1 Primary Assembly 105528 na scaffold_255_arrow_ctg1 unplaced-scaffold na na RXPA01000089.1 = NW_021126320.1 Primary Assembly 576486 na scaffold_256_arrow_ctg1 unplaced-scaffold na na RXPA01000090.1 = NW_021126321.1 Primary Assembly 74168 na scaffold_261_arrow_ctg1 unplaced-scaffold na na RXPA01000092.1 = NW_021126322.1 Primary Assembly 2276138 na scaffold_262_arrow_ctg1 unplaced-scaffold na na RXPA01000093.1 = NW_021126323.1 Primary Assembly 741087 na scaffold_263_arrow_ctg1 unplaced-scaffold na na RXPA01000094.1 = NW_021126324.1 Primary Assembly 24830 na scaffold_264_arrow_ctg1 unplaced-scaffold na na RXPA01000095.1 = NW_021126325.1 Primary Assembly 4591497 na scaffold_265_arrow_ctg1 unplaced-scaffold na na RXPA01000096.1 = NW_021126326.1 Primary Assembly 25260 na scaffold_272_arrow_ctg1 unplaced-scaffold na na RXPA01000097.1 = NW_021126327.1 Primary Assembly 32031 na scaffold_277_arrow_ctg1 unplaced-scaffold na na RXPA01000098.1 = NW_021126328.1 Primary Assembly 2582273 na scaffold_279_arrow_ctg1 unplaced-scaffold na na RXPA01000099.1 = NW_021126329.1 Primary Assembly 29417 na scaffold_281_arrow_ctg1 unplaced-scaffold na na RXPA01000100.1 = NW_021126330.1 Primary Assembly 1069007 na scaffold_283_arrow_ctg1 unplaced-scaffold na na RXPA01000101.1 = NW_021126331.1 Primary Assembly 22696 na scaffold_287_arrow_ctg1 unplaced-scaffold na na RXPA01000102.1 = NW_021126332.1 Primary Assembly 60849 na scaffold_34_arrow_ctg1 unplaced-scaffold na na RXPA01000103.1 = NW_021126333.1 Primary Assembly 21689 na scaffold_38_arrow_ctg1 unplaced-scaffold na na RXPA01000104.1 = NW_021126334.1 Primary Assembly 39351 na scaffold_39_arrow_ctg1 unplaced-scaffold na na RXPA01000105.1 = NW_021126335.1 Primary Assembly 3522468 na scaffold_40_arrow_ctg1 unplaced-scaffold na na RXPA01000106.1 = NW_021126336.1 Primary Assembly 4868541 na scaffold_43_arrow_ctg1 unplaced-scaffold na na RXPA01000107.1 = NW_021126337.1 Primary Assembly 46701 na scaffold_44_arrow_ctg1 unplaced-scaffold na na RXPA01000108.1 = NW_021126338.1 Primary Assembly 25626 na scaffold_46_arrow_ctg1 unplaced-scaffold na na RXPA01000109.1 = NW_021126339.1 Primary Assembly 40559 na scaffold_47_arrow_ctg1 unplaced-scaffold na na RXPA01000110.1 = NW_021126340.1 Primary Assembly 28380 na scaffold_49_arrow_ctg1 unplaced-scaffold na na RXPA01000111.1 = NW_021126341.1 Primary Assembly 52815 na scaffold_50_arrow_ctg1 unplaced-scaffold na na RXPA01000112.1 = NW_021126342.1 Primary Assembly 51689 na scaffold_52_arrow_ctg1 unplaced-scaffold na na RXPA01000113.1 = NW_021126343.1 Primary Assembly 190825 na scaffold_54_arrow_ctg1 unplaced-scaffold na na RXPA01000114.1 = NW_021126344.1 Primary Assembly 59308 na scaffold_56_arrow_ctg1 unplaced-scaffold na na RXPA01000115.1 = NW_021126345.1 Primary Assembly 1838891 na scaffold_5_arrow_ctg1 unplaced-scaffold na na RXPA01000116.1 = NW_021126346.1 Primary Assembly 82430 na scaffold_61_arrow_ctg1 unplaced-scaffold na na RXPA01000117.1 = NW_021126347.1 Primary Assembly 50124 na scaffold_62_arrow_ctg1 unplaced-scaffold na na RXPA01000118.1 = NW_021126348.1 Primary Assembly 28770 na scaffold_63_arrow_ctg1 unplaced-scaffold na na RXPA01000119.1 = NW_021126349.1 Primary Assembly 47368 na scaffold_6_arrow_ctg1 unplaced-scaffold na na RXPA01000120.1 = NW_021126350.1 Primary Assembly 20048 na scaffold_70_arrow_ctg1 unplaced-scaffold na na RXPA01000121.1 = NW_021126351.1 Primary Assembly 20964 na scaffold_72_arrow_ctg1 unplaced-scaffold na na RXPA01000122.1 = NW_021126352.1 Primary Assembly 56739 na scaffold_75_arrow_ctg1 unplaced-scaffold na na RXPA01000123.1 = NW_021126353.1 Primary Assembly 627956 na scaffold_79_arrow_ctg1 unplaced-scaffold na na RXPA01000124.1 = NW_021126354.1 Primary Assembly 46487 na scaffold_7_arrow_ctg1 unplaced-scaffold na na RXPA01000125.1 = NW_021126355.1 Primary Assembly 25193 na scaffold_82_arrow_ctg1 unplaced-scaffold na na RXPA01000127.1 = NW_021126356.1 Primary Assembly 1004898 na scaffold_83_arrow_ctg1 unplaced-scaffold na na RXPA01000128.1 = NW_021126357.1 Primary Assembly 20585 na scaffold_84_arrow_ctg1 unplaced-scaffold na na RXPA01000129.1 = NW_021126358.1 Primary Assembly 692084 na scaffold_85_arrow_ctg1 unplaced-scaffold na na RXPA01000130.1 = NW_021126359.1 Primary Assembly 25556 na scaffold_86_arrow_ctg1 unplaced-scaffold na na RXPA01000131.1 = NW_021126360.1 Primary Assembly 79307 na scaffold_87_arrow_ctg1 unplaced-scaffold na na RXPA01000132.1 = NW_021126361.1 Primary Assembly 36009 na scaffold_89_arrow_ctg1 unplaced-scaffold na na RXPA01000133.1 = NW_021126362.1 Primary Assembly 35687 na scaffold_90_arrow_ctg1 unplaced-scaffold na na RXPA01000134.1 = NW_021126363.1 Primary Assembly 42232 na scaffold_91_arrow_ctg1 unplaced-scaffold na na RXPA01000135.1 = NW_021126364.1 Primary Assembly 105170 na scaffold_93_arrow_ctg1 unplaced-scaffold na na RXPA01000136.1 = NW_021126365.1 Primary Assembly 40058 na scaffold_95_arrow_ctg1 unplaced-scaffold na na RXPA01000137.1 = NW_021126366.1 Primary Assembly 3040182 na scaffold_96_arrow_ctg1 unplaced-scaffold na na RXPA01000138.1 = NW_021126367.1 Primary Assembly 27667 na scaffold_98_arrow_ctg1 unplaced-scaffold na na RXPA01000139.1 = NW_021126368.1 Primary Assembly 19998 na scaffold_99_arrow_ctg1 unplaced-scaffold na na RXPA01000140.1 = NW_021126369.1 Primary Assembly 51665 na scaffold_9_arrow_ctg1 unplaced-scaffold na na RXPA01000141.1 = NW_021126370.1 Primary Assembly 47613 na mPhyDis1_MT assembled-molecule MT Mitochondrion CM016611.1 <> na non-nuclear 16691 na