# Assembly name: ASM434922v1 # Organism name: Saccharopolyspora karakumensis (high G+C Gram-positive bacteria) # Infraspecific name: strain=5K548 # Taxid: 2530386 # BioSample: SAMN11032558 # BioProject: PRJNA524765 # Submitter: Ondokuz Mayis University # Date: 2019-03-13 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: SMLA01 # Assembly method: SPAdes v. FEB-2019 # Expected final version: no # Genome coverage: 76x # Sequencing technology: Illumina HiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_004349225.1 # RefSeq assembly accession: GCF_004349225.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_004349255.1 GCF_004349255.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NODE_1_length_265907_cov_28.9887 unplaced-scaffold na na SMLA01000001.1 = NZ_SMLA01000001.1 Primary Assembly 265907 na NODE_2_length_259182_cov_30.3775 unplaced-scaffold na na SMLA01000002.1 = NZ_SMLA01000002.1 Primary Assembly 259182 na NODE_3_length_250218_cov_27.4007 unplaced-scaffold na na SMLA01000003.1 = NZ_SMLA01000003.1 Primary Assembly 250218 na NODE_4_length_237141_cov_29.4796 unplaced-scaffold na na SMLA01000004.1 = NZ_SMLA01000004.1 Primary Assembly 237141 na NODE_5_length_208581_cov_27.6694 unplaced-scaffold na na SMLA01000005.1 = NZ_SMLA01000005.1 Primary Assembly 208581 na NODE_6_length_191459_cov_27.4385 unplaced-scaffold na na SMLA01000006.1 = NZ_SMLA01000006.1 Primary Assembly 191459 na NODE_7_length_188292_cov_26.153 unplaced-scaffold na na SMLA01000007.1 = NZ_SMLA01000007.1 Primary Assembly 188292 na NODE_8_length_169612_cov_29.2915 unplaced-scaffold na na SMLA01000008.1 = NZ_SMLA01000008.1 Primary Assembly 169612 na NODE_9_length_169455_cov_29.1129 unplaced-scaffold na na SMLA01000009.1 = NZ_SMLA01000009.1 Primary Assembly 169455 na NODE_10_length_169057_cov_25.5326 unplaced-scaffold na na SMLA01000010.1 = NZ_SMLA01000010.1 Primary Assembly 169057 na NODE_11_length_164913_cov_30.5585 unplaced-scaffold na na SMLA01000011.1 = NZ_SMLA01000011.1 Primary Assembly 164913 na NODE_12_length_146470_cov_25.175 unplaced-scaffold na na SMLA01000012.1 = NZ_SMLA01000012.1 Primary Assembly 146470 na NODE_13_length_127315_cov_30.0157 unplaced-scaffold na na SMLA01000013.1 = NZ_SMLA01000013.1 Primary Assembly 127315 na NODE_14_length_118191_cov_23.8131 unplaced-scaffold na na SMLA01000014.1 = NZ_SMLA01000014.1 Primary Assembly 118191 na NODE_15_length_113694_cov_29.2904 unplaced-scaffold na na SMLA01000015.1 = NZ_SMLA01000015.1 Primary Assembly 113694 na NODE_16_length_113297_cov_25.0389 unplaced-scaffold na na SMLA01000016.1 = NZ_SMLA01000016.1 Primary Assembly 113235 na NODE_17_length_106423_cov_27.3233 unplaced-scaffold na na SMLA01000017.1 = NZ_SMLA01000017.1 Primary Assembly 106423 na NODE_18_length_103359_cov_26.4818 unplaced-scaffold na na SMLA01000018.1 = NZ_SMLA01000018.1 Primary Assembly 103359 na NODE_19_length_102379_cov_25.8891 unplaced-scaffold na na SMLA01000019.1 = NZ_SMLA01000019.1 Primary Assembly 102379 na NODE_20_length_93424_cov_21.781 unplaced-scaffold na na SMLA01000020.1 = NZ_SMLA01000020.1 Primary Assembly 93424 na NODE_21_length_92552_cov_28.5507 unplaced-scaffold na na SMLA01000021.1 = NZ_SMLA01000021.1 Primary Assembly 92552 na NODE_22_length_88511_cov_25.606 unplaced-scaffold na na SMLA01000022.1 = NZ_SMLA01000022.1 Primary Assembly 88511 na NODE_23_length_83782_cov_27.5581 unplaced-scaffold na na SMLA01000023.1 = NZ_SMLA01000023.1 Primary Assembly 83782 na NODE_24_length_83377_cov_29.1775 unplaced-scaffold na na SMLA01000024.1 = NZ_SMLA01000024.1 Primary Assembly 83377 na NODE_25_length_82109_cov_30.7458 unplaced-scaffold na na SMLA01000025.1 = NZ_SMLA01000025.1 Primary Assembly 82109 na NODE_26_length_79224_cov_27.1846 unplaced-scaffold na na SMLA01000026.1 = NZ_SMLA01000026.1 Primary Assembly 79224 na NODE_27_length_79108_cov_26.3784 unplaced-scaffold na na SMLA01000027.1 = NZ_SMLA01000027.1 Primary Assembly 79108 na NODE_28_length_78001_cov_28.363 unplaced-scaffold na na SMLA01000028.1 = NZ_SMLA01000028.1 Primary Assembly 78001 na NODE_29_length_75646_cov_29.0574 unplaced-scaffold na na SMLA01000029.1 = NZ_SMLA01000029.1 Primary Assembly 75646 na NODE_30_length_75408_cov_28.3367 unplaced-scaffold na na SMLA01000030.1 = NZ_SMLA01000030.1 Primary Assembly 75408 na NODE_31_length_73223_cov_25.3558 unplaced-scaffold na na SMLA01000031.1 = NZ_SMLA01000031.1 Primary Assembly 73223 na NODE_32_length_72131_cov_27.526 unplaced-scaffold na na SMLA01000032.1 = NZ_SMLA01000032.1 Primary Assembly 72131 na NODE_33_length_70529_cov_30.1711 unplaced-scaffold na na SMLA01000033.1 = NZ_SMLA01000033.1 Primary Assembly 70529 na NODE_34_length_64211_cov_26.1193 unplaced-scaffold na na SMLA01000034.1 = NZ_SMLA01000034.1 Primary Assembly 64211 na NODE_35_length_60684_cov_28.4272 unplaced-scaffold na na SMLA01000035.1 = NZ_SMLA01000035.1 Primary Assembly 60684 na NODE_36_length_60607_cov_29.5756 unplaced-scaffold na na SMLA01000036.1 = NZ_SMLA01000036.1 Primary Assembly 60607 na NODE_37_length_60477_cov_28.4386 unplaced-scaffold na na SMLA01000037.1 = NZ_SMLA01000037.1 Primary Assembly 60477 na NODE_38_length_59930_cov_24.6165 unplaced-scaffold na na SMLA01000038.1 = NZ_SMLA01000038.1 Primary Assembly 59930 na NODE_39_length_58023_cov_29.0868 unplaced-scaffold na na SMLA01000039.1 = NZ_SMLA01000039.1 Primary Assembly 58023 na NODE_40_length_57362_cov_26.5097 unplaced-scaffold na na SMLA01000040.1 = NZ_SMLA01000040.1 Primary Assembly 57362 na NODE_41_length_57344_cov_31.3626 unplaced-scaffold na na SMLA01000041.1 = NZ_SMLA01000041.1 Primary Assembly 57344 na NODE_42_length_56793_cov_28.316 unplaced-scaffold na na SMLA01000042.1 = NZ_SMLA01000042.1 Primary Assembly 56793 na NODE_43_length_56198_cov_26.008 unplaced-scaffold na na SMLA01000043.1 = NZ_SMLA01000043.1 Primary Assembly 56198 na NODE_44_length_55929_cov_27.3987 unplaced-scaffold na na SMLA01000044.1 = NZ_SMLA01000044.1 Primary Assembly 55929 na NODE_45_length_54370_cov_26.7671 unplaced-scaffold na na SMLA01000045.1 = NZ_SMLA01000045.1 Primary Assembly 54370 na NODE_46_length_53976_cov_25.0109 unplaced-scaffold na na SMLA01000046.1 = NZ_SMLA01000046.1 Primary Assembly 53976 na NODE_47_length_53686_cov_28.8699 unplaced-scaffold na na SMLA01000047.1 = NZ_SMLA01000047.1 Primary Assembly 53686 na NODE_48_length_53107_cov_24.5419 unplaced-scaffold na na SMLA01000048.1 = NZ_SMLA01000048.1 Primary Assembly 53107 na NODE_49_length_52903_cov_27.5229 unplaced-scaffold na na SMLA01000049.1 = NZ_SMLA01000049.1 Primary Assembly 52903 na NODE_50_length_52496_cov_30.9372 unplaced-scaffold na na SMLA01000050.1 = NZ_SMLA01000050.1 Primary Assembly 52496 na NODE_51_length_50542_cov_27.4151 unplaced-scaffold na na SMLA01000051.1 = NZ_SMLA01000051.1 Primary Assembly 50542 na NODE_52_length_49614_cov_29.6533 unplaced-scaffold na na SMLA01000052.1 = NZ_SMLA01000052.1 Primary Assembly 49614 na NODE_53_length_49096_cov_30.1673 unplaced-scaffold na na SMLA01000053.1 = NZ_SMLA01000053.1 Primary Assembly 49096 na NODE_54_length_44897_cov_23.1587 unplaced-scaffold na na SMLA01000054.1 = NZ_SMLA01000054.1 Primary Assembly 44897 na NODE_55_length_41922_cov_27.4765 unplaced-scaffold na na SMLA01000055.1 = NZ_SMLA01000055.1 Primary Assembly 41922 na NODE_56_length_41458_cov_25.6416 unplaced-scaffold na na SMLA01000056.1 = NZ_SMLA01000056.1 Primary Assembly 41458 na NODE_57_length_40096_cov_28.8564 unplaced-scaffold na na SMLA01000057.1 = NZ_SMLA01000057.1 Primary Assembly 40096 na NODE_58_length_38504_cov_24.1736 unplaced-scaffold na na SMLA01000058.1 = NZ_SMLA01000058.1 Primary Assembly 38504 na NODE_59_length_38273_cov_29.1187 unplaced-scaffold na na SMLA01000059.1 = NZ_SMLA01000059.1 Primary Assembly 38273 na NODE_60_length_36082_cov_28.6665 unplaced-scaffold na na SMLA01000060.1 = NZ_SMLA01000060.1 Primary Assembly 36082 na NODE_61_length_35698_cov_24.6496 unplaced-scaffold na na SMLA01000061.1 = NZ_SMLA01000061.1 Primary Assembly 35698 na NODE_62_length_35249_cov_26.2471 unplaced-scaffold na na SMLA01000062.1 = NZ_SMLA01000062.1 Primary Assembly 35249 na NODE_63_length_34937_cov_29.5199 unplaced-scaffold na na SMLA01000063.1 = NZ_SMLA01000063.1 Primary Assembly 34937 na NODE_64_length_34354_cov_23.2802 unplaced-scaffold na na SMLA01000064.1 = NZ_SMLA01000064.1 Primary Assembly 34354 na NODE_65_length_32885_cov_26.7882 unplaced-scaffold na na SMLA01000065.1 = NZ_SMLA01000065.1 Primary Assembly 32885 na NODE_66_length_31790_cov_27.0488 unplaced-scaffold na na SMLA01000066.1 = NZ_SMLA01000066.1 Primary Assembly 31790 na NODE_67_length_30496_cov_27.6743 unplaced-scaffold na na SMLA01000067.1 = NZ_SMLA01000067.1 Primary Assembly 30496 na NODE_68_length_29973_cov_28.0426 unplaced-scaffold na na SMLA01000068.1 = NZ_SMLA01000068.1 Primary Assembly 29973 na NODE_69_length_29255_cov_28.0771 unplaced-scaffold na na SMLA01000069.1 = NZ_SMLA01000069.1 Primary Assembly 29255 na NODE_70_length_28834_cov_25.0141 unplaced-scaffold na na SMLA01000070.1 = NZ_SMLA01000070.1 Primary Assembly 28834 na NODE_71_length_27129_cov_19.9165 unplaced-scaffold na na SMLA01000071.1 = NZ_SMLA01000071.1 Primary Assembly 27129 na NODE_72_length_26217_cov_26.2531 unplaced-scaffold na na SMLA01000072.1 = NZ_SMLA01000072.1 Primary Assembly 26217 na NODE_73_length_25606_cov_27.8949 unplaced-scaffold na na SMLA01000073.1 = NZ_SMLA01000073.1 Primary Assembly 25606 na NODE_74_length_25084_cov_24.9025 unplaced-scaffold na na SMLA01000074.1 = NZ_SMLA01000074.1 Primary Assembly 25084 na NODE_75_length_25055_cov_26.7422 unplaced-scaffold na na SMLA01000075.1 = NZ_SMLA01000075.1 Primary Assembly 25055 na NODE_76_length_24813_cov_26.6956 unplaced-scaffold na na SMLA01000076.1 = NZ_SMLA01000076.1 Primary Assembly 24813 na NODE_77_length_22967_cov_29.7804 unplaced-scaffold na na SMLA01000077.1 = NZ_SMLA01000077.1 Primary Assembly 22967 na NODE_78_length_22655_cov_31.674 unplaced-scaffold na na SMLA01000078.1 = NZ_SMLA01000078.1 Primary Assembly 22655 na NODE_79_length_21132_cov_22.3758 unplaced-scaffold na na SMLA01000079.1 = NZ_SMLA01000079.1 Primary Assembly 21132 na NODE_80_length_21011_cov_25.2403 unplaced-scaffold na na SMLA01000080.1 = NZ_SMLA01000080.1 Primary Assembly 21011 na NODE_81_length_20894_cov_26.6343 unplaced-scaffold na na SMLA01000081.1 = NZ_SMLA01000081.1 Primary Assembly 20894 na NODE_82_length_20794_cov_30.6102 unplaced-scaffold na na SMLA01000082.1 = NZ_SMLA01000082.1 Primary Assembly 20794 na NODE_83_length_20371_cov_19.6804 unplaced-scaffold na na SMLA01000083.1 = NZ_SMLA01000083.1 Primary Assembly 20371 na NODE_84_length_18935_cov_28.1669 unplaced-scaffold na na SMLA01000084.1 = NZ_SMLA01000084.1 Primary Assembly 18935 na NODE_85_length_15657_cov_26.0823 unplaced-scaffold na na SMLA01000085.1 = NZ_SMLA01000085.1 Primary Assembly 15657 na NODE_86_length_13843_cov_34.1619 unplaced-scaffold na na SMLA01000086.1 = NZ_SMLA01000086.1 Primary Assembly 13843 na NODE_87_length_13650_cov_24.232 unplaced-scaffold na na SMLA01000087.1 = NZ_SMLA01000087.1 Primary Assembly 13650 na NODE_88_length_13066_cov_22.4623 unplaced-scaffold na na SMLA01000088.1 = NZ_SMLA01000088.1 Primary Assembly 13066 na NODE_89_length_11611_cov_30.6936 unplaced-scaffold na na SMLA01000089.1 = NZ_SMLA01000089.1 Primary Assembly 11611 na NODE_90_length_11587_cov_24.5283 unplaced-scaffold na na SMLA01000090.1 = NZ_SMLA01000090.1 Primary Assembly 11587 na NODE_91_length_11430_cov_26.8151 unplaced-scaffold na na SMLA01000091.1 = NZ_SMLA01000091.1 Primary Assembly 11430 na NODE_92_length_11370_cov_29.0872 unplaced-scaffold na na SMLA01000092.1 = NZ_SMLA01000092.1 Primary Assembly 11370 na NODE_93_length_10397_cov_28.5909 unplaced-scaffold na na SMLA01000093.1 = NZ_SMLA01000093.1 Primary Assembly 10397 na NODE_94_length_10387_cov_17.5031 unplaced-scaffold na na SMLA01000094.1 = NZ_SMLA01000094.1 Primary Assembly 10387 na NODE_95_length_10319_cov_18.7876 unplaced-scaffold na na SMLA01000095.1 = NZ_SMLA01000095.1 Primary Assembly 10319 na NODE_96_length_10044_cov_27.2028 unplaced-scaffold na na SMLA01000096.1 = NZ_SMLA01000096.1 Primary Assembly 10044 na NODE_97_length_8770_cov_28.9941 unplaced-scaffold na na SMLA01000097.1 = NZ_SMLA01000097.1 Primary Assembly 8770 na NODE_98_length_8561_cov_23.7252 unplaced-scaffold na na SMLA01000098.1 = NZ_SMLA01000098.1 Primary Assembly 8561 na NODE_99_length_8486_cov_27.6318 unplaced-scaffold na na SMLA01000099.1 = NZ_SMLA01000099.1 Primary Assembly 8486 na NODE_100_length_8188_cov_14.2357 unplaced-scaffold na na SMLA01000100.1 = NZ_SMLA01000100.1 Primary Assembly 8188 na NODE_101_length_8032_cov_22.6424 unplaced-scaffold na na SMLA01000101.1 = NZ_SMLA01000101.1 Primary Assembly 8032 na NODE_102_length_7888_cov_24.6696 unplaced-scaffold na na SMLA01000102.1 = NZ_SMLA01000102.1 Primary Assembly 7888 na NODE_103_length_7847_cov_16.0115 unplaced-scaffold na na SMLA01000103.1 = NZ_SMLA01000103.1 Primary Assembly 7847 na NODE_104_length_7120_cov_16.9404 unplaced-scaffold na na SMLA01000104.1 = NZ_SMLA01000104.1 Primary Assembly 7120 na NODE_105_length_6827_cov_24.349 unplaced-scaffold na na SMLA01000105.1 = NZ_SMLA01000105.1 Primary Assembly 6827 na NODE_106_length_6436_cov_23.9705 unplaced-scaffold na na SMLA01000106.1 = NZ_SMLA01000106.1 Primary Assembly 6436 na NODE_107_length_6310_cov_10.4663 unplaced-scaffold na na SMLA01000107.1 = NZ_SMLA01000107.1 Primary Assembly 6310 na NODE_108_length_5797_cov_16.3235 unplaced-scaffold na na SMLA01000108.1 = NZ_SMLA01000108.1 Primary Assembly 5797 na NODE_109_length_5473_cov_24.5552 unplaced-scaffold na na SMLA01000109.1 = NZ_SMLA01000109.1 Primary Assembly 5473 na NODE_110_length_5368_cov_22.7189 unplaced-scaffold na na SMLA01000110.1 = NZ_SMLA01000110.1 Primary Assembly 5368 na NODE_111_length_5308_cov_133.536 unplaced-scaffold na na SMLA01000111.1 = NZ_SMLA01000111.1 Primary Assembly 5308 na NODE_112_length_5214_cov_23.6025 unplaced-scaffold na na SMLA01000112.1 = NZ_SMLA01000112.1 Primary Assembly 5214 na NODE_113_length_4899_cov_30.3835 unplaced-scaffold na na SMLA01000113.1 = NZ_SMLA01000113.1 Primary Assembly 4899 na NODE_114_length_4047_cov_11.5513 unplaced-scaffold na na SMLA01000114.1 = NZ_SMLA01000114.1 Primary Assembly 4047 na NODE_115_length_3088_cov_10.5984 unplaced-scaffold na na SMLA01000115.1 = NZ_SMLA01000115.1 Primary Assembly 3088 na NODE_116_length_2172_cov_58.734 unplaced-scaffold na na SMLA01000116.1 = NZ_SMLA01000116.1 Primary Assembly 2172 na NODE_117_length_2077_cov_22.0015 unplaced-scaffold na na SMLA01000117.1 = NZ_SMLA01000117.1 Primary Assembly 2077 na NODE_118_length_2024_cov_15.8972 unplaced-scaffold na na SMLA01000118.1 = NZ_SMLA01000118.1 Primary Assembly 2024 na NODE_119_length_1936_cov_41.4798 unplaced-scaffold na na SMLA01000119.1 = NZ_SMLA01000119.1 Primary Assembly 1936 na NODE_120_length_1896_cov_47.8106 unplaced-scaffold na na SMLA01000120.1 = NZ_SMLA01000120.1 Primary Assembly 1896 na NODE_121_length_1782_cov_46.5976 unplaced-scaffold na na SMLA01000121.1 = NZ_SMLA01000121.1 Primary Assembly 1782 na NODE_122_length_1538_cov_14.0836 unplaced-scaffold na na SMLA01000122.1 = NZ_SMLA01000122.1 Primary Assembly 1538 na NODE_123_length_1508_cov_5.21506 unplaced-scaffold na na SMLA01000123.1 = NZ_SMLA01000123.1 Primary Assembly 1508 na NODE_124_length_1465_cov_55.8834 unplaced-scaffold na na SMLA01000124.1 = NZ_SMLA01000124.1 Primary Assembly 1465 na NODE_125_length_1436_cov_9.45989 unplaced-scaffold na na SMLA01000125.1 = NZ_SMLA01000125.1 Primary Assembly 1436 na NODE_126_length_1404_cov_10.4017 unplaced-scaffold na na SMLA01000126.1 = NZ_SMLA01000126.1 Primary Assembly 1404 na NODE_127_length_1116_cov_56.5086 unplaced-scaffold na na SMLA01000127.1 = NZ_SMLA01000127.1 Primary Assembly 1116 na NODE_128_length_1113_cov_31.9544 unplaced-scaffold na na SMLA01000128.1 = NZ_SMLA01000128.1 Primary Assembly 1113 na NODE_129_length_976_cov_46.1095 unplaced-scaffold na na SMLA01000129.1 = NZ_SMLA01000129.1 Primary Assembly 976 na NODE_130_length_973_cov_21.9882 unplaced-scaffold na na SMLA01000130.1 = NZ_SMLA01000130.1 Primary Assembly 973 na NODE_131_length_942_cov_96.0147 unplaced-scaffold na na SMLA01000131.1 = NZ_SMLA01000131.1 Primary Assembly 942 na NODE_132_length_834_cov_56.8685 unplaced-scaffold na na SMLA01000132.1 = NZ_SMLA01000132.1 Primary Assembly 834 na NODE_134_length_565_cov_66.4977 unplaced-scaffold na na SMLA01000133.1 = NZ_SMLA01000133.1 Primary Assembly 565 na NODE_176_length_366_cov_38.5523 unplaced-scaffold na na SMLA01000134.1 = NZ_SMLA01000134.1 Primary Assembly 366 na NODE_177_length_347_cov_9.45 unplaced-scaffold na na SMLA01000135.1 = NZ_SMLA01000135.1 Primary Assembly 347 na NODE_178_length_301_cov_9.72414 unplaced-scaffold na na SMLA01000136.1 = NZ_SMLA01000136.1 Primary Assembly 301 na NODE_179_length_300_cov_24.3179 unplaced-scaffold na na SMLA01000137.1 = NZ_SMLA01000137.1 Primary Assembly 300 na