hub GCF_005890115.1 genome assembly shortLabel E. coli (BE104 2019) longLabel E. coli (BE104 2019)/Escherichia coli/GCF_005890115.1_ASM589011v1 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_005890115.1_ASM589011v1.description.html genome GCF_005890115.1 taxId 562 groups groups.txt description E. coli (BE104 2019) twoBitPath GCF_005890115.1.2bit twoBitBptUrl GCF_005890115.1.2bit.bpt chromSizes GCF_005890115.1.chrom.sizes.txt chromAliasBb GCF_005890115.1.chromAlias.bb organism ASM589011v1 May 2019 defaultPos NZ_CP040643.1:1591707-1601707 scientificName Escherichia coli htmlPath html/GCF_005890115.1_ASM589011v1.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/005/890/115/GCF_005890115.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/005/890/115/GCF_005890115.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/005/890/115/GCF_005890115.1 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_005890115.1_ASM589011v1.assembly.bb type bigBed 6 html html/GCF_005890115.1_ASM589011v1.assembly searchIndex name searchTrix ixIxx/GCF_005890115.1_ASM589011v1.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_005890115.1_ASM589011v1.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_005890115.1_ASM589011v1.gc5Base.bw html html/GCF_005890115.1_ASM589011v1.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_005890115.1_ASM589011v1.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_005890115.1_ASM589011v1.tandemDups.bb type bigBed 12 track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_005890115.1_ASM589011v1.simpleRepeat.bb html html/GCF_005890115.1_ASM589011v1.simpleRepeat track ncbiGene longLabel NCBI gene predictions shortLabel NCBI Genes visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCF_005890115.1_ASM589011v1.ncbiGene.bb type bigGenePred html html/GCF_005890115.1_ASM589011v1.ncbiGene searchIndex name searchTrix ixIxx/GCF_005890115.1_ASM589011v1.ncbiGene.ix url https://www.ncbi.nlm.nih.gov/gene/?term=$$ urlLabel Entrez gene: labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCF_005890115.1_ASM589011v1.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_005890115.1_ASM589011v1.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_005890115.1_ASM589011v1.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_005890115.1_ASM589011v1.windowMasker.bb html html/GCF_005890115.1_ASM589011v1.windowMasker