The repeat files provided for this assembly were generated using RepeatMasker.
  Smit, AFA, Hubley, R & Green, P.,
  RepeatMasker Open-4.0.
  1996-2010 <http://www.repeatmasker.org>.

VERSION:
RepeatMasker version 4.1.2-p1
Search Engine: Crossmatch [ 1.090518 ]

Using Master RepeatMasker Database: /hive/data/staging/data/RepeatMasker210401/Libraries/RepeatMaskerLib.h5
  Title    : Dfam
  Version  : 3.3
  Date     : 2020-11-09
  Families : 6,953

Species/Taxa Search:
  Oncorhynchus nerka [NCBI Taxonomy ID: 8023]
  Lineage: root;cellular organisms;Eukaryota;Opisthokonta;Metazoa;
           Eumetazoa;Bilateria;Deuterostomia;Chordata;
           Craniata <chordates>;Vertebrata <vertebrates>;
           Gnathostomata <vertebrates>;Teleostomi;Euteleostomi;
           Actinopterygii;Actinopteri;Neopterygii;Teleostei;
           Osteoglossocephalai;Clupeocephala;Euteleosteomorpha;
           Protacanthopterygii;Salmoniformes;Salmonidae;Salmoninae
  95 families in ancestor taxa; 0 lineage-specific families

Building general libraries in: /hive/data/staging/data/RepeatMasker210401/Libraries/CONS-Dfam_3.3/general
Building species libraries in: /hive/data/staging/data/RepeatMasker210401/Libraries/CONS-Dfam_3.3/Oncorhynchus_nerka
RepeatMasker version 4.1.2-p1
CC    Artefacts RELEASE 20190301;                                 *
CC    Dfam RELEASE Dfam_3.1;                                      *
# RepeatMasker engine: -engine crossmatch -s
# RepeatMasker library options: -species 'Oncorhynchus nerka'

PARAMETERS:
/hive/data/staging/data/RepeatMasker/RepeatMasker -engine crossmatch -s -align -species 'Oncorhynchus nerka'