# Assembly name: ASM615211v1 # Organism name: Rubellimicrobium rubrum (a-proteobacteria) # Infraspecific name: strain=YIM 131921 # Taxid: 2585369 # BioSample: SAMN11936696 # BioProject: PRJNA545901 # Submitter: Yunnan University # Date: 2019-06-09 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: VDFU01 # Assembly method: SOAPdenovo v. 2.04 # Expected final version: yes # Genome coverage: 15.0x # Sequencing technology: Illumina HiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_006152115.1 # RefSeq assembly accession: GCF_006152115.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_006152135.1 GCF_006152135.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Scaffold1_1 unplaced-scaffold na na VDFU01000001.1 = NZ_VDFU01000001.1 Primary Assembly 375242 na Scaffold2_1 unplaced-scaffold na na VDFU01000002.1 = NZ_VDFU01000002.1 Primary Assembly 316068 na Scaffold3_1 unplaced-scaffold na na VDFU01000003.1 = NZ_VDFU01000003.1 Primary Assembly 310412 na Scaffold4_1 unplaced-scaffold na na VDFU01000004.1 = NZ_VDFU01000004.1 Primary Assembly 254220 na Scaffold5_1 unplaced-scaffold na na VDFU01000005.1 = NZ_VDFU01000005.1 Primary Assembly 237695 na Scaffold6_1 unplaced-scaffold na na VDFU01000006.1 = NZ_VDFU01000006.1 Primary Assembly 207637 na Scaffold7_1 unplaced-scaffold na na VDFU01000007.1 = NZ_VDFU01000007.1 Primary Assembly 206450 na Scaffold8_1 unplaced-scaffold na na VDFU01000008.1 = NZ_VDFU01000008.1 Primary Assembly 191733 na Scaffold9_1 unplaced-scaffold na na VDFU01000009.1 = NZ_VDFU01000009.1 Primary Assembly 150539 na Scaffold10_1 unplaced-scaffold na na VDFU01000010.1 = NZ_VDFU01000010.1 Primary Assembly 145678 na Scaffold11_1 unplaced-scaffold na na VDFU01000011.1 = NZ_VDFU01000011.1 Primary Assembly 32204 na Scaffold11_2 unplaced-scaffold na na VDFU01000012.1 = NZ_VDFU01000012.1 Primary Assembly 98493 na Scaffold12_1 unplaced-scaffold na na VDFU01000013.1 = NZ_VDFU01000013.1 Primary Assembly 125379 na Scaffold13_1 unplaced-scaffold na na VDFU01000014.1 = NZ_VDFU01000014.1 Primary Assembly 124287 na Scaffold14_1 unplaced-scaffold na na VDFU01000015.1 = NZ_VDFU01000015.1 Primary Assembly 122812 na Scaffold15_1 unplaced-scaffold na na VDFU01000016.1 = NZ_VDFU01000016.1 Primary Assembly 102564 na Scaffold16_1 unplaced-scaffold na na VDFU01000017.1 = NZ_VDFU01000017.1 Primary Assembly 95409 na Scaffold17_1 unplaced-scaffold na na VDFU01000018.1 = NZ_VDFU01000018.1 Primary Assembly 91743 na Scaffold18_1 unplaced-scaffold na na VDFU01000019.1 = NZ_VDFU01000019.1 Primary Assembly 80615 na Scaffold19_1 unplaced-scaffold na na VDFU01000020.1 = NZ_VDFU01000020.1 Primary Assembly 72570 na Scaffold20_1 unplaced-scaffold na na VDFU01000021.1 = NZ_VDFU01000021.1 Primary Assembly 35856 na Scaffold20_2 unplaced-scaffold na na VDFU01000022.1 = NZ_VDFU01000022.1 Primary Assembly 35835 na Scaffold21_1 unplaced-scaffold na na VDFU01000023.1 = NZ_VDFU01000023.1 Primary Assembly 67305 na Scaffold22_1 unplaced-scaffold na na VDFU01000024.1 = NZ_VDFU01000024.1 Primary Assembly 63870 na Scaffold23_1 unplaced-scaffold na na VDFU01000025.1 = NZ_VDFU01000025.1 Primary Assembly 60321 na Scaffold24_1 unplaced-scaffold na na VDFU01000026.1 = NZ_VDFU01000026.1 Primary Assembly 59027 na Scaffold25_1 unplaced-scaffold na na VDFU01000027.1 = NZ_VDFU01000027.1 Primary Assembly 57941 na Scaffold26_1 unplaced-scaffold na na VDFU01000028.1 = NZ_VDFU01000028.1 Primary Assembly 52002 na Scaffold27_1 unplaced-scaffold na na VDFU01000029.1 = NZ_VDFU01000029.1 Primary Assembly 43949 na Scaffold28_1 unplaced-scaffold na na VDFU01000030.1 = NZ_VDFU01000030.1 Primary Assembly 42585 na Scaffold29_1 unplaced-scaffold na na VDFU01000031.1 = NZ_VDFU01000031.1 Primary Assembly 41393 na Scaffold30_1 unplaced-scaffold na na VDFU01000032.1 = NZ_VDFU01000032.1 Primary Assembly 40511 na Scaffold31_1 unplaced-scaffold na na VDFU01000033.1 = NZ_VDFU01000033.1 Primary Assembly 36056 na Scaffold32_1 unplaced-scaffold na na VDFU01000034.1 = NZ_VDFU01000034.1 Primary Assembly 36038 na Scaffold33_1 unplaced-scaffold na na VDFU01000035.1 = NZ_VDFU01000035.1 Primary Assembly 33189 na Scaffold34_1 unplaced-scaffold na na VDFU01000036.1 = NZ_VDFU01000036.1 Primary Assembly 28954 na Scaffold35_1 unplaced-scaffold na na VDFU01000037.1 = NZ_VDFU01000037.1 Primary Assembly 26959 na Scaffold36_1 unplaced-scaffold na na VDFU01000038.1 = NZ_VDFU01000038.1 Primary Assembly 26802 na Scaffold37_1 unplaced-scaffold na na VDFU01000039.1 = NZ_VDFU01000039.1 Primary Assembly 23834 na Scaffold38_1 unplaced-scaffold na na VDFU01000040.1 = NZ_VDFU01000040.1 Primary Assembly 23616 na Scaffold39_1 unplaced-scaffold na na VDFU01000041.1 = NZ_VDFU01000041.1 Primary Assembly 23514 na Scaffold40_1 unplaced-scaffold na na VDFU01000042.1 = NZ_VDFU01000042.1 Primary Assembly 22558 na Scaffold41_1 unplaced-scaffold na na VDFU01000043.1 = NZ_VDFU01000043.1 Primary Assembly 22446 na Scaffold42_1 unplaced-scaffold na na VDFU01000044.1 = NZ_VDFU01000044.1 Primary Assembly 22311 na Scaffold43_1 unplaced-scaffold na na VDFU01000045.1 = NZ_VDFU01000045.1 Primary Assembly 21788 na Scaffold44_1 unplaced-scaffold na na VDFU01000046.1 = NZ_VDFU01000046.1 Primary Assembly 19492 na Scaffold45_1 unplaced-scaffold na na VDFU01000047.1 = NZ_VDFU01000047.1 Primary Assembly 18074 na Scaffold46_1 unplaced-scaffold na na VDFU01000048.1 = NZ_VDFU01000048.1 Primary Assembly 16736 na Scaffold47_1 unplaced-scaffold na na VDFU01000049.1 = NZ_VDFU01000049.1 Primary Assembly 15199 na Scaffold48_1 unplaced-scaffold na na VDFU01000050.1 = NZ_VDFU01000050.1 Primary Assembly 14436 na Scaffold49_1 unplaced-scaffold na na VDFU01000051.1 = NZ_VDFU01000051.1 Primary Assembly 14217 na Scaffold50_1 unplaced-scaffold na na VDFU01000052.1 = NZ_VDFU01000052.1 Primary Assembly 13088 na Scaffold51_1 unplaced-scaffold na na VDFU01000053.1 = NZ_VDFU01000053.1 Primary Assembly 12550 na Scaffold52_1 unplaced-scaffold na na VDFU01000054.1 = NZ_VDFU01000054.1 Primary Assembly 11882 na Scaffold53_1 unplaced-scaffold na na VDFU01000055.1 = NZ_VDFU01000055.1 Primary Assembly 10666 na Scaffold54_1 unplaced-scaffold na na VDFU01000056.1 = NZ_VDFU01000056.1 Primary Assembly 9941 na Scaffold55_1 unplaced-scaffold na na VDFU01000057.1 = NZ_VDFU01000057.1 Primary Assembly 9843 na Scaffold56_1 unplaced-scaffold na na VDFU01000058.1 = NZ_VDFU01000058.1 Primary Assembly 9643 na Scaffold57_1 unplaced-scaffold na na VDFU01000059.1 = NZ_VDFU01000059.1 Primary Assembly 8823 na Scaffold58_1 unplaced-scaffold na na VDFU01000060.1 = NZ_VDFU01000060.1 Primary Assembly 8050 na Scaffold59_1 unplaced-scaffold na na VDFU01000061.1 = NZ_VDFU01000061.1 Primary Assembly 7546 na Scaffold60_1 unplaced-scaffold na na VDFU01000062.1 = NZ_VDFU01000062.1 Primary Assembly 7356 na Scaffold61_1 unplaced-scaffold na na VDFU01000063.1 = NZ_VDFU01000063.1 Primary Assembly 6555 na Scaffold62_1 unplaced-scaffold na na VDFU01000064.1 = NZ_VDFU01000064.1 Primary Assembly 6482 na Scaffold63_1 unplaced-scaffold na na VDFU01000065.1 = NZ_VDFU01000065.1 Primary Assembly 5854 na Scaffold64_1 unplaced-scaffold na na VDFU01000066.1 = NZ_VDFU01000066.1 Primary Assembly 5426 na Scaffold65_1 unplaced-scaffold na na VDFU01000067.1 = NZ_VDFU01000067.1 Primary Assembly 5220 na Scaffold66_1 unplaced-scaffold na na VDFU01000068.1 = NZ_VDFU01000068.1 Primary Assembly 4804 na Scaffold67_1 unplaced-scaffold na na VDFU01000069.1 = NZ_VDFU01000069.1 Primary Assembly 4612 na Scaffold68_1 unplaced-scaffold na na VDFU01000070.1 = NZ_VDFU01000070.1 Primary Assembly 3997 na Scaffold69_1 unplaced-scaffold na na VDFU01000071.1 = NZ_VDFU01000071.1 Primary Assembly 3983 na Scaffold70_1 unplaced-scaffold na na VDFU01000072.1 = NZ_VDFU01000072.1 Primary Assembly 3936 na Scaffold71_1 unplaced-scaffold na na VDFU01000073.1 = NZ_VDFU01000073.1 Primary Assembly 3919 na Scaffold72_1 unplaced-scaffold na na VDFU01000074.1 = NZ_VDFU01000074.1 Primary Assembly 3874 na Scaffold73_1 unplaced-scaffold na na VDFU01000075.1 = NZ_VDFU01000075.1 Primary Assembly 3734 na Scaffold74_1 unplaced-scaffold na na VDFU01000076.1 = NZ_VDFU01000076.1 Primary Assembly 3656 na Scaffold75_1 unplaced-scaffold na na VDFU01000077.1 = NZ_VDFU01000077.1 Primary Assembly 3553 na Scaffold76_1 unplaced-scaffold na na VDFU01000078.1 = NZ_VDFU01000078.1 Primary Assembly 3386 na Scaffold77_1 unplaced-scaffold na na VDFU01000079.1 = NZ_VDFU01000079.1 Primary Assembly 3340 na Scaffold78_1 unplaced-scaffold na na VDFU01000080.1 = NZ_VDFU01000080.1 Primary Assembly 3104 na Scaffold79_1 unplaced-scaffold na na VDFU01000081.1 = NZ_VDFU01000081.1 Primary Assembly 3060 na Scaffold80_1 unplaced-scaffold na na VDFU01000082.1 = NZ_VDFU01000082.1 Primary Assembly 3034 na Scaffold81_1 unplaced-scaffold na na VDFU01000083.1 = NZ_VDFU01000083.1 Primary Assembly 2899 na Scaffold82_1 unplaced-scaffold na na VDFU01000084.1 = NZ_VDFU01000084.1 Primary Assembly 1021 na Scaffold82_2 unplaced-scaffold na na VDFU01000085.1 = NZ_VDFU01000085.1 Primary Assembly 859 na Scaffold82_3 unplaced-scaffold na na VDFU01000086.1 = NZ_VDFU01000086.1 Primary Assembly 717 na Scaffold83_1 unplaced-scaffold na na VDFU01000087.1 = NZ_VDFU01000087.1 Primary Assembly 2248 na Scaffold84_1 unplaced-scaffold na na VDFU01000088.1 = NZ_VDFU01000088.1 Primary Assembly 1924 na Scaffold85_1 unplaced-scaffold na na VDFU01000089.1 = NZ_VDFU01000089.1 Primary Assembly 1910 na Scaffold86_1 unplaced-scaffold na na VDFU01000090.1 = NZ_VDFU01000090.1 Primary Assembly 1886 na Scaffold87_1 unplaced-scaffold na na VDFU01000091.1 = NZ_VDFU01000091.1 Primary Assembly 1762 na Scaffold88_1 unplaced-scaffold na na VDFU01000092.1 = NZ_VDFU01000092.1 Primary Assembly 1600 na Scaffold89_1 unplaced-scaffold na na VDFU01000093.1 = NZ_VDFU01000093.1 Primary Assembly 1566 na Scaffold90_1 unplaced-scaffold na na VDFU01000094.1 = NZ_VDFU01000094.1 Primary Assembly 1559 na Scaffold91_1 unplaced-scaffold na na VDFU01000095.1 = NZ_VDFU01000095.1 Primary Assembly 1554 na Scaffold92_1 unplaced-scaffold na na VDFU01000096.1 = NZ_VDFU01000096.1 Primary Assembly 1416 na Scaffold93_1 unplaced-scaffold na na VDFU01000097.1 = NZ_VDFU01000097.1 Primary Assembly 1394 na Scaffold94_1 unplaced-scaffold na na VDFU01000098.1 = NZ_VDFU01000098.1 Primary Assembly 1322 na Scaffold95_1 unplaced-scaffold na na VDFU01000099.1 = NZ_VDFU01000099.1 Primary Assembly 1254 na Scaffold96_1 unplaced-scaffold na na VDFU01000100.1 = NZ_VDFU01000100.1 Primary Assembly 1148 na Scaffold97_1 unplaced-scaffold na na VDFU01000101.1 = NZ_VDFU01000101.1 Primary Assembly 1137 na Scaffold98_1 unplaced-scaffold na na VDFU01000102.1 = NZ_VDFU01000102.1 Primary Assembly 1092 na Scaffold99_1 unplaced-scaffold na na VDFU01000103.1 = NZ_VDFU01000103.1 Primary Assembly 1036 na Scaffold100_1 unplaced-scaffold na na VDFU01000104.1 = NZ_VDFU01000104.1 Primary Assembly 1036 na