# Assembly name: ASM615214v1 # Organism name: Rubellimicrobium roseum (a-proteobacteria) # Infraspecific name: strain=YIM 48858 # Taxid: 687525 # BioSample: SAMN11936761 # BioProject: PRJNA545914 # Submitter: Yunnan University # Date: 2019-06-09 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: VDFV01 # Assembly method: SOAPdenovo v. 2.04 # Expected final version: yes # Genome coverage: 15.2x # Sequencing technology: Illumina HiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_006152145.1 # RefSeq assembly accession: GCF_006152145.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_006152175.1 GCF_006152175.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Scaffold1_1 unplaced-scaffold na na VDFV01000001.1 = NZ_VDFV01000001.1 Primary Assembly 544940 na Scaffold2_1 unplaced-scaffold na na VDFV01000002.1 = NZ_VDFV01000002.1 Primary Assembly 354792 na Scaffold3_1 unplaced-scaffold na na VDFV01000003.1 = NZ_VDFV01000003.1 Primary Assembly 246412 na Scaffold4_1 unplaced-scaffold na na VDFV01000004.1 = NZ_VDFV01000004.1 Primary Assembly 244631 na Scaffold5_1 unplaced-scaffold na na VDFV01000005.1 = NZ_VDFV01000005.1 Primary Assembly 195694 na Scaffold6_1 unplaced-scaffold na na VDFV01000006.1 = NZ_VDFV01000006.1 Primary Assembly 86729 na Scaffold6_2 unplaced-scaffold na na VDFV01000007.1 = NZ_VDFV01000007.1 Primary Assembly 61623 na Scaffold7_1 unplaced-scaffold na na VDFV01000008.1 = NZ_VDFV01000008.1 Primary Assembly 138928 na Scaffold8_1 unplaced-scaffold na na VDFV01000009.1 = NZ_VDFV01000009.1 Primary Assembly 127752 na Scaffold9_1 unplaced-scaffold na na VDFV01000010.1 = NZ_VDFV01000010.1 Primary Assembly 120863 na Scaffold10_1 unplaced-scaffold na na VDFV01000011.1 = NZ_VDFV01000011.1 Primary Assembly 107480 na Scaffold11_1 unplaced-scaffold na na VDFV01000012.1 = NZ_VDFV01000012.1 Primary Assembly 100857 na Scaffold12_1 unplaced-scaffold na na VDFV01000013.1 = NZ_VDFV01000013.1 Primary Assembly 97218 na Scaffold13_1 unplaced-scaffold na na VDFV01000014.1 = NZ_VDFV01000014.1 Primary Assembly 87793 na Scaffold14_1 unplaced-scaffold na na VDFV01000015.1 = NZ_VDFV01000015.1 Primary Assembly 79875 na Scaffold15_1 unplaced-scaffold na na VDFV01000016.1 = NZ_VDFV01000016.1 Primary Assembly 78450 na Scaffold16_1 unplaced-scaffold na na VDFV01000017.1 = NZ_VDFV01000017.1 Primary Assembly 75010 na Scaffold16_2 unplaced-scaffold na na VDFV01000018.1 = NZ_VDFV01000018.1 Primary Assembly 3096 na Scaffold17_1 unplaced-scaffold na na VDFV01000019.1 = NZ_VDFV01000019.1 Primary Assembly 70782 na Scaffold18_1 unplaced-scaffold na na VDFV01000020.1 = NZ_VDFV01000020.1 Primary Assembly 58819 na Scaffold19_1 unplaced-scaffold na na VDFV01000021.1 = NZ_VDFV01000021.1 Primary Assembly 56070 na Scaffold20_1 unplaced-scaffold na na VDFV01000022.1 = NZ_VDFV01000022.1 Primary Assembly 51686 na Scaffold21_1 unplaced-scaffold na na VDFV01000023.1 = NZ_VDFV01000023.1 Primary Assembly 51124 na Scaffold22_1 unplaced-scaffold na na VDFV01000024.1 = NZ_VDFV01000024.1 Primary Assembly 51108 na Scaffold23_1 unplaced-scaffold na na VDFV01000025.1 = NZ_VDFV01000025.1 Primary Assembly 50655 na Scaffold24_1 unplaced-scaffold na na VDFV01000026.1 = NZ_VDFV01000026.1 Primary Assembly 50216 na Scaffold25_1 unplaced-scaffold na na VDFV01000027.1 = NZ_VDFV01000027.1 Primary Assembly 50087 na Scaffold26_1 unplaced-scaffold na na VDFV01000028.1 = NZ_VDFV01000028.1 Primary Assembly 49686 na Scaffold27_1 unplaced-scaffold na na VDFV01000029.1 = NZ_VDFV01000029.1 Primary Assembly 49362 na Scaffold28_1 unplaced-scaffold na na VDFV01000030.1 = NZ_VDFV01000030.1 Primary Assembly 48282 na Scaffold29_1 unplaced-scaffold na na VDFV01000031.1 = NZ_VDFV01000031.1 Primary Assembly 43824 na Scaffold30_1 unplaced-scaffold na na VDFV01000032.1 = NZ_VDFV01000032.1 Primary Assembly 43821 na Scaffold31_1 unplaced-scaffold na na VDFV01000033.1 = NZ_VDFV01000033.1 Primary Assembly 42954 na Scaffold32_1 unplaced-scaffold na na VDFV01000034.1 = NZ_VDFV01000034.1 Primary Assembly 41291 na Scaffold33_1 unplaced-scaffold na na VDFV01000035.1 = NZ_VDFV01000035.1 Primary Assembly 40124 na Scaffold34_1 unplaced-scaffold na na VDFV01000036.1 = NZ_VDFV01000036.1 Primary Assembly 40003 na Scaffold35_1 unplaced-scaffold na na VDFV01000037.1 = NZ_VDFV01000037.1 Primary Assembly 39384 na Scaffold36_1 unplaced-scaffold na na VDFV01000038.1 = NZ_VDFV01000038.1 Primary Assembly 39272 na Scaffold37_1 unplaced-scaffold na na VDFV01000039.1 = NZ_VDFV01000039.1 Primary Assembly 37738 na Scaffold38_1 unplaced-scaffold na na VDFV01000040.1 = NZ_VDFV01000040.1 Primary Assembly 37455 na Scaffold39_1 unplaced-scaffold na na VDFV01000041.1 = NZ_VDFV01000041.1 Primary Assembly 34395 na Scaffold40_1 unplaced-scaffold na na VDFV01000042.1 = NZ_VDFV01000042.1 Primary Assembly 33490 na Scaffold41_1 unplaced-scaffold na na VDFV01000043.1 = NZ_VDFV01000043.1 Primary Assembly 30393 na Scaffold42_1 unplaced-scaffold na na VDFV01000044.1 = NZ_VDFV01000044.1 Primary Assembly 28945 na Scaffold43_1 unplaced-scaffold na na VDFV01000045.1 = NZ_VDFV01000045.1 Primary Assembly 27859 na Scaffold44_1 unplaced-scaffold na na VDFV01000046.1 = NZ_VDFV01000046.1 Primary Assembly 26352 na Scaffold45_1 unplaced-scaffold na na VDFV01000047.1 = NZ_VDFV01000047.1 Primary Assembly 26241 na Scaffold46_1 unplaced-scaffold na na VDFV01000048.1 = NZ_VDFV01000048.1 Primary Assembly 25327 na Scaffold47_1 unplaced-scaffold na na VDFV01000049.1 = NZ_VDFV01000049.1 Primary Assembly 25279 na Scaffold48_1 unplaced-scaffold na na VDFV01000050.1 = NZ_VDFV01000050.1 Primary Assembly 23560 na Scaffold49_1 unplaced-scaffold na na VDFV01000051.1 = NZ_VDFV01000051.1 Primary Assembly 23106 na Scaffold50_1 unplaced-scaffold na na VDFV01000052.1 = NZ_VDFV01000052.1 Primary Assembly 22911 na Scaffold51_1 unplaced-scaffold na na VDFV01000053.1 = NZ_VDFV01000053.1 Primary Assembly 22811 na Scaffold52_1 unplaced-scaffold na na VDFV01000054.1 = NZ_VDFV01000054.1 Primary Assembly 22434 na Scaffold53_1 unplaced-scaffold na na VDFV01000055.1 = NZ_VDFV01000055.1 Primary Assembly 22192 na Scaffold54_1 unplaced-scaffold na na VDFV01000056.1 = NZ_VDFV01000056.1 Primary Assembly 22151 na Scaffold55_1 unplaced-scaffold na na VDFV01000057.1 = NZ_VDFV01000057.1 Primary Assembly 21495 na Scaffold56_1 unplaced-scaffold na na VDFV01000058.1 = NZ_VDFV01000058.1 Primary Assembly 20516 na Scaffold57_1 unplaced-scaffold na na VDFV01000059.1 = NZ_VDFV01000059.1 Primary Assembly 20214 na Scaffold58_1 unplaced-scaffold na na VDFV01000060.1 = NZ_VDFV01000060.1 Primary Assembly 19832 na Scaffold59_1 unplaced-scaffold na na VDFV01000061.1 = NZ_VDFV01000061.1 Primary Assembly 18123 na Scaffold60_1 unplaced-scaffold na na VDFV01000062.1 = NZ_VDFV01000062.1 Primary Assembly 18095 na Scaffold61_1 unplaced-scaffold na na VDFV01000063.1 = NZ_VDFV01000063.1 Primary Assembly 17786 na Scaffold62_1 unplaced-scaffold na na VDFV01000064.1 = NZ_VDFV01000064.1 Primary Assembly 17287 na Scaffold63_1 unplaced-scaffold na na VDFV01000065.1 = NZ_VDFV01000065.1 Primary Assembly 16960 na Scaffold64_1 unplaced-scaffold na na VDFV01000066.1 = NZ_VDFV01000066.1 Primary Assembly 16492 na Scaffold65_1 unplaced-scaffold na na VDFV01000067.1 = NZ_VDFV01000067.1 Primary Assembly 16209 na Scaffold66_1 unplaced-scaffold na na VDFV01000068.1 = NZ_VDFV01000068.1 Primary Assembly 15699 na Scaffold67_1 unplaced-scaffold na na VDFV01000069.1 = NZ_VDFV01000069.1 Primary Assembly 15475 na Scaffold68_1 unplaced-scaffold na na VDFV01000070.1 = NZ_VDFV01000070.1 Primary Assembly 14795 na Scaffold69_1 unplaced-scaffold na na VDFV01000071.1 = NZ_VDFV01000071.1 Primary Assembly 14344 na Scaffold70_1 unplaced-scaffold na na VDFV01000072.1 = NZ_VDFV01000072.1 Primary Assembly 14283 na Scaffold71_1 unplaced-scaffold na na VDFV01000073.1 = NZ_VDFV01000073.1 Primary Assembly 14213 na Scaffold72_1 unplaced-scaffold na na VDFV01000074.1 = NZ_VDFV01000074.1 Primary Assembly 13382 na Scaffold73_1 unplaced-scaffold na na VDFV01000075.1 = NZ_VDFV01000075.1 Primary Assembly 12444 na Scaffold74_1 unplaced-scaffold na na VDFV01000076.1 = NZ_VDFV01000076.1 Primary Assembly 12075 na Scaffold75_1 unplaced-scaffold na na VDFV01000077.1 = NZ_VDFV01000077.1 Primary Assembly 11664 na Scaffold76_1 unplaced-scaffold na na VDFV01000078.1 = NZ_VDFV01000078.1 Primary Assembly 11151 na Scaffold77_1 unplaced-scaffold na na VDFV01000079.1 = NZ_VDFV01000079.1 Primary Assembly 10973 na Scaffold78_1 unplaced-scaffold na na VDFV01000080.1 = NZ_VDFV01000080.1 Primary Assembly 10642 na Scaffold79_1 unplaced-scaffold na na VDFV01000081.1 = NZ_VDFV01000081.1 Primary Assembly 10427 na Scaffold80_1 unplaced-scaffold na na VDFV01000082.1 = NZ_VDFV01000082.1 Primary Assembly 9342 na Scaffold81_1 unplaced-scaffold na na VDFV01000083.1 = NZ_VDFV01000083.1 Primary Assembly 8708 na Scaffold82_1 unplaced-scaffold na na VDFV01000084.1 = NZ_VDFV01000084.1 Primary Assembly 8474 na Scaffold83_1 unplaced-scaffold na na VDFV01000085.1 = NZ_VDFV01000085.1 Primary Assembly 8461 na Scaffold84_1 unplaced-scaffold na na VDFV01000086.1 = NZ_VDFV01000086.1 Primary Assembly 8132 na Scaffold85_1 unplaced-scaffold na na VDFV01000087.1 = NZ_VDFV01000087.1 Primary Assembly 7971 na Scaffold86_1 unplaced-scaffold na na VDFV01000088.1 = NZ_VDFV01000088.1 Primary Assembly 7237 na Scaffold87_1 unplaced-scaffold na na VDFV01000089.1 = NZ_VDFV01000089.1 Primary Assembly 6510 na Scaffold88_1 unplaced-scaffold na na VDFV01000090.1 = NZ_VDFV01000090.1 Primary Assembly 414 na Scaffold88_2 unplaced-scaffold na na VDFV01000091.1 = NZ_VDFV01000091.1 Primary Assembly 6037 na Scaffold89_1 unplaced-scaffold na na VDFV01000092.1 = NZ_VDFV01000092.1 Primary Assembly 6413 na Scaffold90_1 unplaced-scaffold na na VDFV01000093.1 = NZ_VDFV01000093.1 Primary Assembly 6106 na Scaffold91_1 unplaced-scaffold na na VDFV01000094.1 = NZ_VDFV01000094.1 Primary Assembly 5738 na Scaffold92_1 unplaced-scaffold na na VDFV01000095.1 = NZ_VDFV01000095.1 Primary Assembly 5735 na Scaffold93_1 unplaced-scaffold na na VDFV01000096.1 = NZ_VDFV01000096.1 Primary Assembly 5560 na Scaffold94_1 unplaced-scaffold na na VDFV01000097.1 = NZ_VDFV01000097.1 Primary Assembly 5436 na Scaffold95_1 unplaced-scaffold na na VDFV01000098.1 = NZ_VDFV01000098.1 Primary Assembly 5404 na Scaffold96_1 unplaced-scaffold na na VDFV01000099.1 = NZ_VDFV01000099.1 Primary Assembly 5192 na Scaffold97_1 unplaced-scaffold na na VDFV01000100.1 = NZ_VDFV01000100.1 Primary Assembly 4970 na Scaffold98_1 unplaced-scaffold na na VDFV01000101.1 = NZ_VDFV01000101.1 Primary Assembly 4716 na Scaffold99_1 unplaced-scaffold na na VDFV01000102.1 = NZ_VDFV01000102.1 Primary Assembly 4661 na Scaffold100_1 unplaced-scaffold na na VDFV01000103.1 = NZ_VDFV01000103.1 Primary Assembly 4189 na Scaffold101_1 unplaced-scaffold na na VDFV01000104.1 = NZ_VDFV01000104.1 Primary Assembly 4165 na Scaffold102_1 unplaced-scaffold na na VDFV01000105.1 = NZ_VDFV01000105.1 Primary Assembly 4104 na Scaffold103_1 unplaced-scaffold na na VDFV01000106.1 = NZ_VDFV01000106.1 Primary Assembly 3795 na Scaffold104_1 unplaced-scaffold na na VDFV01000107.1 = NZ_VDFV01000107.1 Primary Assembly 3748 na Scaffold105_1 unplaced-scaffold na na VDFV01000108.1 = NZ_VDFV01000108.1 Primary Assembly 3735 na Scaffold106_1 unplaced-scaffold na na VDFV01000109.1 = NZ_VDFV01000109.1 Primary Assembly 3564 na Scaffold107_1 unplaced-scaffold na na VDFV01000110.1 = NZ_VDFV01000110.1 Primary Assembly 3380 na Scaffold108_1 unplaced-scaffold na na VDFV01000111.1 = NZ_VDFV01000111.1 Primary Assembly 3279 na Scaffold109_1 unplaced-scaffold na na VDFV01000112.1 = NZ_VDFV01000112.1 Primary Assembly 3197 na Scaffold110_1 unplaced-scaffold na na VDFV01000113.1 = NZ_VDFV01000113.1 Primary Assembly 3164 na Scaffold111_1 unplaced-scaffold na na VDFV01000114.1 = NZ_VDFV01000114.1 Primary Assembly 3146 na Scaffold112_1 unplaced-scaffold na na VDFV01000115.1 = NZ_VDFV01000115.1 Primary Assembly 3134 na Scaffold113_1 unplaced-scaffold na na VDFV01000116.1 = NZ_VDFV01000116.1 Primary Assembly 3103 na Scaffold114_1 unplaced-scaffold na na VDFV01000117.1 = NZ_VDFV01000117.1 Primary Assembly 3007 na Scaffold115_1 unplaced-scaffold na na VDFV01000118.1 = NZ_VDFV01000118.1 Primary Assembly 2944 na Scaffold116_1 unplaced-scaffold na na VDFV01000119.1 = NZ_VDFV01000119.1 Primary Assembly 2884 na Scaffold117_1 unplaced-scaffold na na VDFV01000120.1 = NZ_VDFV01000120.1 Primary Assembly 2861 na Scaffold118_1 unplaced-scaffold na na VDFV01000121.1 = NZ_VDFV01000121.1 Primary Assembly 2792 na Scaffold119_1 unplaced-scaffold na na VDFV01000122.1 = NZ_VDFV01000122.1 Primary Assembly 2545 na Scaffold120_1 unplaced-scaffold na na VDFV01000123.1 = NZ_VDFV01000123.1 Primary Assembly 2520 na Scaffold121_1 unplaced-scaffold na na VDFV01000124.1 = NZ_VDFV01000124.1 Primary Assembly 2438 na Scaffold122_1 unplaced-scaffold na na VDFV01000125.1 = NZ_VDFV01000125.1 Primary Assembly 2425 na Scaffold123_1 unplaced-scaffold na na VDFV01000126.1 = NZ_VDFV01000126.1 Primary Assembly 2418 na Scaffold124_1 unplaced-scaffold na na VDFV01000127.1 = NZ_VDFV01000127.1 Primary Assembly 2364 na Scaffold125_1 unplaced-scaffold na na VDFV01000128.1 = NZ_VDFV01000128.1 Primary Assembly 2228 na Scaffold126_1 unplaced-scaffold na na VDFV01000129.1 = NZ_VDFV01000129.1 Primary Assembly 2209 na Scaffold127_1 unplaced-scaffold na na VDFV01000130.1 = NZ_VDFV01000130.1 Primary Assembly 2040 na Scaffold128_1 unplaced-scaffold na na VDFV01000131.1 = NZ_VDFV01000131.1 Primary Assembly 1975 na Scaffold129_1 unplaced-scaffold na na VDFV01000132.1 = NZ_VDFV01000132.1 Primary Assembly 1954 na Scaffold130_1 unplaced-scaffold na na VDFV01000133.1 = NZ_VDFV01000133.1 Primary Assembly 1930 na Scaffold131_1 unplaced-scaffold na na VDFV01000134.1 = NZ_VDFV01000134.1 Primary Assembly 1865 na Scaffold132_1 unplaced-scaffold na na VDFV01000135.1 = NZ_VDFV01000135.1 Primary Assembly 1865 na Scaffold133_1 unplaced-scaffold na na VDFV01000136.1 = NZ_VDFV01000136.1 Primary Assembly 1845 na Scaffold134_1 unplaced-scaffold na na VDFV01000137.1 = NZ_VDFV01000137.1 Primary Assembly 1810 na Scaffold135_1 unplaced-scaffold na na VDFV01000138.1 = NZ_VDFV01000138.1 Primary Assembly 1736 na Scaffold136_1 unplaced-scaffold na na VDFV01000139.1 = NZ_VDFV01000139.1 Primary Assembly 1610 na Scaffold137_1 unplaced-scaffold na na VDFV01000140.1 = NZ_VDFV01000140.1 Primary Assembly 1502 na Scaffold138_1 unplaced-scaffold na na VDFV01000141.1 = NZ_VDFV01000141.1 Primary Assembly 1475 na Scaffold139_1 unplaced-scaffold na na VDFV01000142.1 = NZ_VDFV01000142.1 Primary Assembly 1416 na Scaffold140_1 unplaced-scaffold na na VDFV01000143.1 = NZ_VDFV01000143.1 Primary Assembly 1401 na Scaffold141_1 unplaced-scaffold na na VDFV01000144.1 = NZ_VDFV01000144.1 Primary Assembly 1375 na Scaffold142_1 unplaced-scaffold na na VDFV01000145.1 = NZ_VDFV01000145.1 Primary Assembly 1357 na Scaffold143_1 unplaced-scaffold na na VDFV01000146.1 = NZ_VDFV01000146.1 Primary Assembly 1348 na Scaffold144_1 unplaced-scaffold na na VDFV01000147.1 = NZ_VDFV01000147.1 Primary Assembly 1315 na Scaffold145_1 unplaced-scaffold na na VDFV01000148.1 = NZ_VDFV01000148.1 Primary Assembly 1297 na Scaffold146_1 unplaced-scaffold na na VDFV01000149.1 = NZ_VDFV01000149.1 Primary Assembly 1176 na Scaffold147_1 unplaced-scaffold na na VDFV01000150.1 = NZ_VDFV01000150.1 Primary Assembly 1172 na Scaffold148_1 unplaced-scaffold na na VDFV01000151.1 = NZ_VDFV01000151.1 Primary Assembly 1169 na Scaffold149_1 unplaced-scaffold na na VDFV01000152.1 = NZ_VDFV01000152.1 Primary Assembly 1087 na Scaffold150_1 unplaced-scaffold na na VDFV01000153.1 = NZ_VDFV01000153.1 Primary Assembly 1043 na Scaffold151_1 unplaced-scaffold na na VDFV01000154.1 = NZ_VDFV01000154.1 Primary Assembly 1016 na Scaffold152_1 unplaced-scaffold na na VDFV01000155.1 = NZ_VDFV01000155.1 Primary Assembly 1003 na