# Assembly name: mLynCan4_v1.p # Organism name: Lynx canadensis (Canada lynx) # Isolate: LIC74 # Sex: male # Taxid: 61383 # BioSample: SAMN09948483 # BioProject: PRJNA489107 # Submitter: Vertebrate Genomes Project # Date: 2019-07-26 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VHLE01 # Assembly method: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano Solve 2 enzyme v. 3.2.1; Salsa2 v. 2.2; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-01-10; VGP s # Expected final version: no # Genome coverage: 72.0x # Sequencing technology: PacBio Sequel I; 10X genome; Bionano Genomics; Arima Genomics Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_007474595.1 # RefSeq assembly accession: GCF_007474595.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_007474575.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_007474685.1 GCF_007474685.1 Primary Assembly ## GCA_007474695.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_Scaffold_1 assembled-molecule A1 Chromosome CM017329.1 = NC_044303.1 Primary Assembly 240012660 na Super_Scaffold_5 assembled-molecule A2 Chromosome CM017330.1 = NC_044304.1 Primary Assembly 168988343 na Super_Scaffold_9 assembled-molecule A3 Chromosome CM017331.1 = NC_044305.1 Primary Assembly 139831168 na scaffold_2_arrow_ctg1 assembled-molecule B1 Chromosome CM017332.1 = NC_044306.1 Primary Assembly 205980852 na Super_Scaffold_3 assembled-molecule B2 Chromosome CM017333.1 = NC_044307.1 Primary Assembly 152753185 na Super_Scaffold_2 assembled-molecule B3 Chromosome CM017334.1 = NC_044308.1 Primary Assembly 146106016 na Super_Scaffold_13 assembled-molecule B4 Chromosome CM017335.1 = NC_044309.1 Primary Assembly 141311636 na Super_Scaffold_4 assembled-molecule C1 Chromosome CM017336.1 = NC_044310.1 Primary Assembly 220954660 na Super_Scaffold_12 assembled-molecule C2 Chromosome CM017337.1 = NC_044311.1 Primary Assembly 158927374 na Super_Scaffold_14 assembled-molecule D1 Chromosome CM017338.1 = NC_044312.1 Primary Assembly 115715915 na scaffold_11_arrow_ctg1 assembled-molecule D2 Chromosome CM017339.1 = NC_044313.1 Primary Assembly 87252839 na Super_Scaffold_6 assembled-molecule D3 Chromosome CM017340.1 = NC_044314.1 Primary Assembly 93448339 na Super_Scaffold_8 assembled-molecule D4 Chromosome CM017341.1 = NC_044315.1 Primary Assembly 93445709 na scaffold_18_arrow_ctg1 assembled-molecule E1 Chromosome CM017342.1 = NC_044316.1 Primary Assembly 60670153 na Super_Scaffold_11 assembled-molecule E2 Chromosome CM017343.1 = NC_044317.1 Primary Assembly 61563313 na scaffold_21_arrow_ctg1 assembled-molecule E3 Chromosome CM017344.1 = NC_044318.1 Primary Assembly 41050830 na scaffold_17_arrow_ctg1 assembled-molecule F1 Chromosome CM017345.1 = NC_044319.1 Primary Assembly 69073222 na Super_Scaffold_7 assembled-molecule F2 Chromosome CM017346.1 = NC_044320.1 Primary Assembly 83270606 na Super_Scaffold_10 assembled-molecule X Chromosome CM017347.1 = NC_044321.1 Primary Assembly 122081366 na scaffold_17_arrow_ctg1_1 unplaced-scaffold na na VHLE01000006.1 = NW_022059692.1 Primary Assembly 152777 na scaffold_18_arrow_ctg1_1 unplaced-scaffold na na VHLE01000009.1 = NW_022059693.1 Primary Assembly 62198 na scaffold_26_arrow_ctg1 unplaced-scaffold na na VHLE01000014.1 = NW_022059694.1 Primary Assembly 929516 na scaffold_35_arrow_ctg1 unplaced-scaffold na na VHLE01000016.1 = NW_022059695.1 Primary Assembly 1097615 na scaffold_36_arrow_ctg1 unplaced-scaffold na na VHLE01000017.1 = NW_022059696.1 Primary Assembly 995025 na scaffold_42_arrow_ctg1 unplaced-scaffold na na VHLE01000019.1 = NW_022059697.1 Primary Assembly 559481 na scaffold_44_arrow_ctg1 unplaced-scaffold na na VHLE01000020.1 = NW_022059698.1 Primary Assembly 523057 na scaffold_45_arrow_ctg1 unplaced-scaffold na na VHLE01000021.1 = NW_022059699.1 Primary Assembly 377132 na scaffold_47_arrow_ctg1 unplaced-scaffold na na VHLE01000022.1 = NW_022059700.1 Primary Assembly 253129 na scaffold_49_arrow_ctg1 unplaced-scaffold na na VHLE01000023.1 = NW_022059701.1 Primary Assembly 97538 na scaffold_50_arrow_ctg1 unplaced-scaffold na na VHLE01000025.1 = NW_022059702.1 Primary Assembly 93660 na scaffold_51_arrow_ctg1 unplaced-scaffold na na VHLE01000026.1 = NW_022059703.1 Primary Assembly 81805 na scaffold_52_arrow_ctg1 unplaced-scaffold na na VHLE01000027.1 = NW_022059704.1 Primary Assembly 72670 na scaffold_53_arrow_ctg1 unplaced-scaffold na na VHLE01000028.1 = NW_022059705.1 Primary Assembly 67592 na scaffold_54_arrow_ctg1 unplaced-scaffold na na VHLE01000029.1 = NW_022059706.1 Primary Assembly 68325 na scaffold_57_arrow_ctg1 unplaced-scaffold na na VHLE01000030.1 = NW_022059707.1 Primary Assembly 54009 na scaffold_58_arrow_ctg1 unplaced-scaffold na na VHLE01000031.1 = NW_022059708.1 Primary Assembly 51901 na scaffold_59_arrow_ctg1 unplaced-scaffold na na VHLE01000032.1 = NW_022059709.1 Primary Assembly 51687 na scaffold_61_arrow_ctg1 unplaced-scaffold na na VHLE01000034.1 = NW_022059710.1 Primary Assembly 49735 na scaffold_62_arrow_ctg1 unplaced-scaffold na na VHLE01000035.1 = NW_022059711.1 Primary Assembly 48158 na scaffold_63_arrow_ctg1 unplaced-scaffold na na VHLE01000036.1 = NW_022059712.1 Primary Assembly 43930 na scaffold_64_arrow_ctg1 unplaced-scaffold na na VHLE01000037.1 = NW_022059713.1 Primary Assembly 41772 na scaffold_65_arrow_ctg1 unplaced-scaffold na na VHLE01000038.1 = NW_022059714.1 Primary Assembly 39736 na scaffold_66_arrow_ctg1 unplaced-scaffold na na VHLE01000039.1 = NW_022059715.1 Primary Assembly 38278 na scaffold_67_arrow_ctg1 unplaced-scaffold na na VHLE01000040.1 = NW_022059716.1 Primary Assembly 35960 na scaffold_68_arrow_ctg1 unplaced-scaffold na na VHLE01000041.1 = NW_022059717.1 Primary Assembly 33107 na scaffold_69_arrow_ctg1 unplaced-scaffold na na VHLE01000042.1 = NW_022059718.1 Primary Assembly 31671 na scaffold_70_arrow_ctg1 unplaced-scaffold na na VHLE01000044.1 = NW_022059719.1 Primary Assembly 31503 na scaffold_72_arrow_ctg1 unplaced-scaffold na na VHLE01000045.1 = NW_022059720.1 Primary Assembly 29874 na scaffold_73_arrow_ctg1 unplaced-scaffold na na VHLE01000046.1 = NW_022059721.1 Primary Assembly 28874 na scaffold_74_arrow_ctg1 unplaced-scaffold na na VHLE01000047.1 = NW_022059722.1 Primary Assembly 27850 na scaffold_75_arrow_ctg1 unplaced-scaffold na na VHLE01000048.1 = NW_022059723.1 Primary Assembly 26426 na scaffold_76_arrow_ctg1 unplaced-scaffold na na VHLE01000049.1 = NW_022059724.1 Primary Assembly 25287 na scaffold_77_arrow_ctg1 unplaced-scaffold na na VHLE01000050.1 = NW_022059725.1 Primary Assembly 25318 na scaffold_78_arrow_ctg1 unplaced-scaffold na na VHLE01000051.1 = NW_022059726.1 Primary Assembly 24574 na scaffold_79_arrow_ctg1 unplaced-scaffold na na VHLE01000052.1 = NW_022059727.1 Primary Assembly 24566 na scaffold_80_arrow_ctg1 unplaced-scaffold na na VHLE01000054.1 = NW_022059728.1 Primary Assembly 24262 na scaffold_81_arrow_ctg1 unplaced-scaffold na na VHLE01000055.1 = NW_022059729.1 Primary Assembly 24174 na scaffold_82_arrow_ctg1 unplaced-scaffold na na VHLE01000056.1 = NW_022059730.1 Primary Assembly 23762 na scaffold_83_arrow_ctg1 unplaced-scaffold na na VHLE01000057.1 = NW_022059731.1 Primary Assembly 23100 na scaffold_84_arrow_ctg1 unplaced-scaffold na na VHLE01000058.1 = NW_022059732.1 Primary Assembly 22828 na scaffold_85_arrow_ctg1 unplaced-scaffold na na VHLE01000059.1 = NW_022059733.1 Primary Assembly 22736 na scaffold_86_arrow_ctg1 unplaced-scaffold na na VHLE01000060.1 = NW_022059734.1 Primary Assembly 22512 na scaffold_87_arrow_ctg1 unplaced-scaffold na na VHLE01000061.1 = NW_022059735.1 Primary Assembly 22129 na scaffold_88_arrow_ctg1 unplaced-scaffold na na VHLE01000062.1 = NW_022059736.1 Primary Assembly 21928 na scaffold_89_arrow_ctg1 unplaced-scaffold na na VHLE01000063.1 = NW_022059737.1 Primary Assembly 21498 na scaffold_90_arrow_ctg1 unplaced-scaffold na na VHLE01000065.1 = NW_022059738.1 Primary Assembly 20921 na mLynCan4_MT assembled-molecule MT Mitochondrion CM017348.1 <> na non-nuclear 17044 na