hub GCF_007990345.1 genome assembly shortLabel cotton G.hirsutum (HudsonAlpha 2021) longLabel cotton G.hirsutum (HudsonAlpha 2021)/Gossypium hirsutum/GCF_007990345.1_Gossypium_hirsutum_v2.1 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_007990345.1_Gossypium_hirsutum_v2.1.description.html genome GCF_007990345.1 taxId 3635 groups groups.txt description cotton G.hirsutum (HudsonAlpha 2021) twoBitPath GCF_007990345.1.2bit twoBitBptUrl GCF_007990345.1.2bit.bpt chromSizes GCF_007990345.1.chrom.sizes.txt chromAliasBb GCF_007990345.1.chromAlias.bb chromAuthority ucsc organism Gossypium_hirsutum_v2.1 Feb. 2021 defaultPos NC_053429.1:42731779-42741779 scientificName Gossypium hirsutum htmlPath html/GCF_007990345.1_Gossypium_hirsutum_v2.1.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/007/990/345/GCF_007990345.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/007/990/345/GCF_007990345.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic 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map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_007990345.1_Gossypium_hirsutum_v2.1.gc5Base.bw html html/GCF_007990345.1_Gossypium_hirsutum_v2.1.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_007990345.1_Gossypium_hirsutum_v2.1.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCF_007990345.1_Gossypium_hirsutum_v2.1.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_007990345.1_Gossypium_hirsutum_v2.1.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCF_007990345.1_Gossypium_hirsutum_v2.1.rmsk.bb maxWindowToDraw 5000000 html html/GCF_007990345.1_Gossypium_hirsutum_v2.1.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_007990345.1_Gossypium_hirsutum_v2.1.simpleRepeat.bb html html/GCF_007990345.1_Gossypium_hirsutum_v2.1.simpleRepeat track refSeqComposite compositeTrack on shortLabel NCBI RefSeq longLabel RefSeq gene predictions from NCBI group genes visibility pack type bigBed dragAndDrop subTracks allButtonPair on dataVersion NCBI Gossypium hirsutum Annotation Release 101 (2021-04-26) html html/GCF_007990345.1_Gossypium_hirsutum_v2.1.refSeqComposite priority 2 track ncbiRefSeq parent refSeqComposite on color 12,12,120 altColor 120,12,12 shortLabel RefSeq All type bigGenePred labelFields name,geneName,geneName2 defaultLabelFields geneName2 searchIndex name searchTrix ixIxx/GCF_007990345.1_Gossypium_hirsutum_v2.1.ncbiRefSeq.ix bigDataUrl bbi/GCF_007990345.1_Gossypium_hirsutum_v2.1.ncbiRefSeq.bb longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*) idXref ncbiRefSeqLink mrnaAcc name baseColorUseCds given baseColorDefault genomicCodons priority 1 track ncbiRefSeqCurated color 12,12,120 parent refSeqComposite on shortLabel RefSeq Curated longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*) type bigGenePred labelFields name,geneName,geneName2 defaultLabelFields geneName2 searchIndex name searchTrix ixIxx/GCF_007990345.1_Gossypium_hirsutum_v2.1.ncbiRefSeqCurated.ix idXref ncbiRefSeqLink mrnaAcc name bigDataUrl bbi/GCF_007990345.1_Gossypium_hirsutum_v2.1.ncbiRefSeqCurated.bb baseColorUseCds given baseColorDefault genomicCodons priority 2 track ncbiRefSeqPredicted color 12,12,120 parent refSeqComposite on shortLabel RefSeq Predicted longLabel NCBI RefSeq genes, predicted 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