# Assembly name:  mZalCal1.pri.v2
# Organism name:  Zalophus californianus (California sea lion)
# Isolate:  mZalCal1
# Sex:  male
# Taxid:          9704
# BioSample:      SAMN12368149
# BioProject:     PRJNA559673
# Submitter:      Vertebrate Genomes Project
# Date:           2020-07-14
# Assembly type:  haploid (principal pseudohaplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    WPOA02
# Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-13; VGP assembly pipeline individual v. 1.6
# Expected final version: no
# Genome coverage: 80.51x
# Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
# RefSeq category: Representative Genome
# GenBank assembly accession: GCA_009762305.2
# RefSeq assembly accession: GCF_009762305.2
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCA_009762295.2 (alternate pseudohaplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_009762345.2	GCF_009762345.2	Primary Assembly
## GCA_009762355.2	GCF_003966355.1	non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	CM019802.2	=	NC_045595.1	Primary Assembly	216121386	na
SUPER_2	assembled-molecule	2	Chromosome	CM019803.2	=	NC_045596.1	Primary Assembly	203405709	na
SUPER_3	assembled-molecule	3	Chromosome	CM019804.2	=	NC_045597.1	Primary Assembly	195893461	na
SUPER_4	assembled-molecule	4	Chromosome	CM019805.2	=	NC_045598.1	Primary Assembly	191600665	na
SUPER_5	assembled-molecule	5	Chromosome	CM019806.2	=	NC_045599.1	Primary Assembly	154431508	na
SUPER_6	assembled-molecule	6	Chromosome	CM019807.2	=	NC_045600.1	Primary Assembly	147960056	na
SUPER_7	assembled-molecule	7	Chromosome	CM019808.2	=	NC_045601.1	Primary Assembly	147124152	na
SUPER_8	assembled-molecule	8	Chromosome	CM019809.2	=	NC_045602.1	Primary Assembly	140579763	na
SUPER_9	assembled-molecule	9	Chromosome	CM019810.2	=	NC_045603.1	Primary Assembly	140387268	na
SUPER_10	assembled-molecule	10	Chromosome	CM019811.2	=	NC_045604.1	Primary Assembly	114256090	na
SUPER_11	assembled-molecule	11	Chromosome	CM019812.2	=	NC_045605.1	Primary Assembly	113586643	na
SUPER_12	assembled-molecule	12	Chromosome	CM019813.2	=	NC_045606.1	Primary Assembly	107195179	na
SUPER_13	assembled-molecule	13	Chromosome	CM019814.2	=	NC_045607.1	Primary Assembly	95463665	na
SUPER_14	assembled-molecule	14	Chromosome	CM019815.2	=	NC_045608.1	Primary Assembly	94255706	na
SUPER_15	assembled-molecule	15	Chromosome	CM019816.2	=	NC_045609.1	Primary Assembly	89155059	na
SUPER_16	assembled-molecule	16	Chromosome	CM019817.2	=	NC_045610.1	Primary Assembly	62786583	na
SUPER_17	assembled-molecule	17	Chromosome	CM019818.2	=	NC_045611.1	Primary Assembly	60388317	na
SUPER_X	assembled-molecule	X	Chromosome	CM019819.2	=	NC_045612.1	Primary Assembly	129409743	na
SUPER_Y	assembled-molecule	Y	Chromosome	CM019820.2	=	NC_045613.1	Primary Assembly	3986568	na
scaffold_26_ctg1	unplaced-scaffold	na	na	WPOA02000020.1	=	NW_023365534.1	Primary Assembly	296504	na
scaffold_30_ctg1	unplaced-scaffold	na	na	WPOA02000021.1	=	NW_023365535.1	Primary Assembly	96369	na
scaffold_31_ctg1	unplaced-scaffold	na	na	WPOA02000022.1	=	NW_023365536.1	Primary Assembly	79878	na
scaffold_32_ctg1	unplaced-scaffold	na	na	WPOA02000023.1	=	NW_023365537.1	Primary Assembly	74794	na
scaffold_34_ctg1	unplaced-scaffold	na	na	WPOA02000024.1	=	NW_023365538.1	Primary Assembly	66764	na
scaffold_35_ctg1	unplaced-scaffold	na	na	WPOA02000025.1	=	NW_023365539.1	Primary Assembly	64903	na
scaffold_38_ctg1	unplaced-scaffold	na	na	WPOA02000026.1	=	NW_023365540.1	Primary Assembly	55849	na
scaffold_39_ctg1	unplaced-scaffold	na	na	WPOA02000027.1	=	NW_023365541.1	Primary Assembly	53782	na
scaffold_40_ctg1	unplaced-scaffold	na	na	WPOA02000028.1	=	NW_023365542.1	Primary Assembly	50614	na
scaffold_45_ctg1	unplaced-scaffold	na	na	WPOA02000029.1	=	NW_023365543.1	Primary Assembly	42590	na
scaffold_46_ctg1	unplaced-scaffold	na	na	WPOA02000030.1	=	NW_023365544.1	Primary Assembly	41616	na
scaffold_47_ctg1	unplaced-scaffold	na	na	WPOA02000031.1	=	NW_023365545.1	Primary Assembly	40627	na
scaffold_48_ctg1	unplaced-scaffold	na	na	WPOA02000032.1	=	NW_023365546.1	Primary Assembly	38974	na
scaffold_49_ctg1	unplaced-scaffold	na	na	WPOA02000033.1	=	NW_023365547.1	Primary Assembly	35727	na
scaffold_51_ctg1	unplaced-scaffold	na	na	WPOA02000034.1	=	NW_023365548.1	Primary Assembly	34750	na
scaffold_52_ctg1	unplaced-scaffold	na	na	WPOA02000035.1	=	NW_023365549.1	Primary Assembly	31546	na
scaffold_53_ctg1	unplaced-scaffold	na	na	WPOA02000036.1	=	NW_023365550.1	Primary Assembly	23717	na
scaffold_54_ctg1	unplaced-scaffold	na	na	WPOA02000037.1	=	NW_023365551.1	Primary Assembly	22673	na
scaffold_55_ctg1	unplaced-scaffold	na	na	WPOA02000038.1	=	NW_023365552.1	Primary Assembly	15916	na
scaffold_56_ctg1	unplaced-scaffold	na	na	WPOA02000039.1	=	NW_023365553.1	Primary Assembly	15234	na
scaffold_57_ctg1	unplaced-scaffold	na	na	WPOA02000040.1	=	NW_023365554.1	Primary Assembly	11248	na
scaffold_58_ctg1	unplaced-scaffold	na	na	WPOA02000041.1	=	NW_023365555.1	Primary Assembly	9293	na
scaffold_59_ctg1	unplaced-scaffold	na	na	WPOA02000042.1	=	NW_023365556.1	Primary Assembly	7672	na
scaffold_60_ctg1	unplaced-scaffold	na	na	WPOA02000043.1	=	NW_023365557.1	Primary Assembly	6074	na
scaffold_23_ctg1_1	unplaced-scaffold	na	na	WPOA02000044.1	=	NW_023365531.1	Primary Assembly	147322	na
scaffold_23_ctg1_2	unplaced-scaffold	na	na	WPOA02000045.1	=	NW_023365532.1	Primary Assembly	120644	na
scaffold_25_ctg1_1	unplaced-scaffold	na	na	WPOA02000046.1	=	NW_023365533.1	Primary Assembly	195994	na
MT	assembled-molecule	MT	Mitochondrion	na	<>	NC_008416.1	non-nuclear	16677	na
mZalCal1_MT	assembled-molecule	MT	Mitochondrion	CM019821.1	<>	na	non-nuclear	16715	na