# Assembly name: rDerCor1.pri.v3 # Organism name: Dermochelys coriacea (leatherback sea turtle) # Isolate: rDerCor1 # Sex: male # Taxid: 27794 # BioSample: SAMN12629498 # BioProject: PRJNA561993 # Submitter: G10K # Date: 2020-12-09 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WSPL03 # Assembly method: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-11-06; VGP assembly pipeline individual v. 1.6 # Expected final version: no # Genome coverage: 63.68x # Sequencing technology: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009764565.3 # RefSeq assembly accession: GCF_009764565.2 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_009762595.2 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009764575.3 GCF_009764575.2 Primary Assembly ## GCA_009764585.3 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM019935.2 = NC_050068.1 Primary Assembly 354478938 na SUPER_2 assembled-molecule 2 Chromosome CM019936.3 = NC_050069.1 Primary Assembly 272704568 na SUPER_3 assembled-molecule 3 Chromosome CM019937.2 = NC_050070.1 Primary Assembly 212168110 na SUPER_4 assembled-molecule 4 Chromosome CM019938.2 = NC_050071.1 Primary Assembly 146520673 na SUPER_5 assembled-molecule 5 Chromosome CM019939.2 = NC_050072.1 Primary Assembly 137568771 na SUPER_6 assembled-molecule 6 Chromosome CM019940.2 = NC_050073.1 Primary Assembly 131128815 na SUPER_7 assembled-molecule 7 Chromosome CM019941.2 = NC_050074.1 Primary Assembly 127644590 na SUPER_8 assembled-molecule 8 Chromosome CM019942.2 = NC_050075.1 Primary Assembly 109294577 na SUPER_9 assembled-molecule 9 Chromosome CM019943.2 = NC_050076.1 Primary Assembly 105213316 na SUPER_10 assembled-molecule 10 Chromosome CM019944.2 = NC_050077.1 Primary Assembly 86472384 na SUPER_11 assembled-molecule 11 Chromosome CM019945.2 = NC_050078.1 Primary Assembly 79995514 na SUPER_12 assembled-molecule 12 Chromosome CM019946.2 = NC_050079.1 Primary Assembly 44241090 na SUPER_13 assembled-molecule 13 Chromosome CM019947.2 = NC_050080.1 Primary Assembly 41159716 na SUPER_14 assembled-molecule 14 Chromosome CM019948.2 = NC_050081.1 Primary Assembly 40021378 na SUPER_15 assembled-molecule 15 Chromosome CM019949.2 = NC_050082.1 Primary Assembly 33199653 na SUPER_16 assembled-molecule 16 Chromosome CM019950.2 = NC_050083.1 Primary Assembly 26401370 na SUPER_17 assembled-molecule 17 Chromosome CM019951.2 = NC_050084.1 Primary Assembly 25428285 na SUPER_18 assembled-molecule 18 Chromosome CM019952.2 = NC_050085.1 Primary Assembly 23665181 na SUPER_19 assembled-molecule 19 Chromosome CM019953.3 = NC_050086.1 Primary Assembly 20023515 na SUPER_20 assembled-molecule 20 Chromosome CM019954.3 = NC_050087.1 Primary Assembly 19206509 na SUPER_21 assembled-molecule 21 Chromosome CM019955.3 = NC_050088.1 Primary Assembly 18859425 na SUPER_22 assembled-molecule 22 Chromosome CM019956.3 = NC_050089.1 Primary Assembly 18746278 na SUPER_23 assembled-molecule 23 Chromosome CM019957.2 = NC_050090.1 Primary Assembly 17228317 na SUPER_24 assembled-molecule 24 Chromosome CM019958.2 = NC_050091.1 Primary Assembly 16950461 na SUPER_25 assembled-molecule 25 Chromosome CM019959.2 = NC_050092.1 Primary Assembly 16479532 na SUPER_26 assembled-molecule 26 Chromosome CM019960.2 = NC_050093.1 Primary Assembly 16472168 na SUPER_27 assembled-molecule 27 Chromosome CM019961.3 = NC_050094.1 Primary Assembly 16294212 na SUPER_28 assembled-molecule 28 Chromosome CM019962.2 = NC_050095.1 Primary Assembly 6736449 na SUPER_11_unloc_12 unlocalized-scaffold 11 Chromosome WSPL03000011.1 = NW_024039815.1 Primary Assembly 4772 na SUPER_11_unloc_11 unlocalized-scaffold 11 Chromosome WSPL03000012.1 = NW_024039814.1 Primary Assembly 6026 na SUPER_11_unloc_3 unlocalized-scaffold 11 Chromosome WSPL03000013.1 = NW_024039817.1 Primary Assembly 62672 na SUPER_11_unloc_2 unlocalized-scaffold 11 Chromosome WSPL03000014.1 = NW_024039816.1 Primary Assembly 88916 na SUPER_11_unloc_8 unlocalized-scaffold 11 Chromosome WSPL03000015.1 = NW_024039822.1 Primary Assembly 12220 na SUPER_11_unloc_9 unlocalized-scaffold 11 Chromosome WSPL03000016.1 = NW_024039823.1 Primary Assembly 9024 na SUPER_11_unloc_10 unlocalized-scaffold 11 Chromosome WSPL03000017.1 = NW_024039813.1 Primary Assembly 8721 na SUPER_11_unloc_1 unlocalized-scaffold 11 Chromosome WSPL03000018.1 = NW_024039812.1 Primary Assembly 161456 na SUPER_11_unloc_4 unlocalized-scaffold 11 Chromosome WSPL03000019.1 = NW_024039818.1 Primary Assembly 30635 na SUPER_11_unloc_5 unlocalized-scaffold 11 Chromosome WSPL03000020.1 = NW_024039819.1 Primary Assembly 27714 na SUPER_11_unloc_6 unlocalized-scaffold 11 Chromosome WSPL03000021.1 = NW_024039820.1 Primary Assembly 24225 na SUPER_11_unloc_7 unlocalized-scaffold 11 Chromosome WSPL03000022.1 = NW_024039821.1 Primary Assembly 21914 na rDerCor1_MT assembled-molecule MT Mitochondrion CM019965.1 <> na non-nuclear 16625 na