# Assembly name: fHipHip1.pri # Organism name: Hippoglossus hippoglossus (Atlantic halibut) # Isolate: fHipHip1 # Sex: male # Taxid: 8267 # BioSample: SAMN12629501 # BioProject: PRJNA562001 # Submitter: Vertebrate Genomes Project # Date: 2019-12-31 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WOYB01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. smrtlink_6.0.0.47841; purge_haplotigs v. 1.0.3; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. smrtlink_6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-27; VGP assembly pipeline individual v. 1.5 # Expected final version: no # Genome coverage: 56.23x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009819705.1 # RefSeq assembly accession: GCF_009819705.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_009819745.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009819725.1 GCF_009819725.1 Primary Assembly ## GCA_009819755.1 GCF_012711295.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name S9 assembled-molecule 1 Chromosome CM020190.1 = NC_047151.1 Primary Assembly 30597443 na S24 assembled-molecule 2 Chromosome CM020191.1 = NC_047152.1 Primary Assembly 11297635 na S1 assembled-molecule 3 Chromosome CM020192.1 = NC_047153.1 Primary Assembly 32675587 na S7 assembled-molecule 4 Chromosome CM020193.1 = NC_047154.1 Primary Assembly 28512877 na S2 assembled-molecule 5 Chromosome CM020194.1 = NC_047155.1 Primary Assembly 30753830 na S4 assembled-molecule 6 Chromosome CM020195.1 = NC_047156.1 Primary Assembly 28531750 na S6 assembled-molecule 7 Chromosome CM020196.1 = NC_047157.1 Primary Assembly 28364880 na S15 assembled-molecule 8 Chromosome CM020197.1 = NC_047158.1 Primary Assembly 23524515 na S3 assembled-molecule 9 Chromosome CM020198.1 = NC_047159.1 Primary Assembly 29170869 na S5 assembled-molecule 10 Chromosome CM020199.1 = NC_047160.1 Primary Assembly 27686247 na S12 assembled-molecule 11 Chromosome CM020200.1 = NC_047161.1 Primary Assembly 22214583 na S18 assembled-molecule 12 Chromosome CM020201.1 = NC_047162.1 Primary Assembly 21256114 na S22 assembled-molecule 13 Chromosome CM020202.1 = NC_047163.1 Primary Assembly 29083852 na S11 assembled-molecule 14 Chromosome CM020203.1 = NC_047164.1 Primary Assembly 24953334 na S16 assembled-molecule 15 Chromosome CM020204.1 = NC_047165.1 Primary Assembly 25621292 na S8 assembled-molecule 16 Chromosome CM020205.1 = NC_047166.1 Primary Assembly 27148517 na S10 assembled-molecule 17 Chromosome CM020206.1 = NC_047167.1 Primary Assembly 24735652 na S23 assembled-molecule 18 Chromosome CM020207.1 = NC_047168.1 Primary Assembly 16627714 na S19 assembled-molecule 19 Chromosome CM020208.1 = NC_047169.1 Primary Assembly 20912647 na S20 assembled-molecule 20 Chromosome CM020209.1 = NC_047170.1 Primary Assembly 20800843 na S13 assembled-molecule 21 Chromosome CM020210.1 = NC_047171.1 Primary Assembly 25055940 na S14 assembled-molecule 22 Chromosome CM020211.1 = NC_047172.1 Primary Assembly 26312018 na S21 assembled-molecule 23 Chromosome CM020212.1 = NC_047173.1 Primary Assembly 18431247 na S17 assembled-molecule 24 Chromosome CM020213.1 = NC_047174.1 Primary Assembly 21435488 na scaffold_100_arrow_ctg1 unplaced-scaffold na na WOYB01000025.1 = NW_022986819.1 Primary Assembly 9476 na scaffold_101_arrow_ctg1 unplaced-scaffold na na WOYB01000026.1 = NW_022986820.1 Primary Assembly 7199 na scaffold_102_arrow_ctg1 unplaced-scaffold na na WOYB01000027.1 = NW_022986821.1 Primary Assembly 6352 na scaffold_103_arrow_ctg1 unplaced-scaffold na na WOYB01000028.1 = NW_022986822.1 Primary Assembly 5353 na scaffold_104_arrow_ctg1 unplaced-scaffold na na WOYB01000029.1 = NW_022986823.1 Primary Assembly 5180 na scaffold_105_arrow_ctg1 unplaced-scaffold na na WOYB01000030.1 = NW_022986824.1 Primary Assembly 1578 na scaffold_106_arrow_ctg1 unplaced-scaffold na na WOYB01000031.1 = NW_022986825.1 Primary Assembly 1459 na scaffold_54_arrow_ctg1 unplaced-scaffold na na WOYB01000032.1 = NW_022986826.1 Primary Assembly 137251 na scaffold_65_arrow_ctg1 unplaced-scaffold na na WOYB01000033.1 = NW_022986827.1 Primary Assembly 107378 na scaffold_69_arrow_ctg1 unplaced-scaffold na na WOYB01000034.1 = NW_022986828.1 Primary Assembly 80850 na scaffold_71_arrow_ctg1 unplaced-scaffold na na WOYB01000035.1 = NW_022986829.1 Primary Assembly 69446 na scaffold_73_arrow_ctg1 unplaced-scaffold na na WOYB01000036.1 = NW_022986830.1 Primary Assembly 64821 na scaffold_74_arrow_ctg1 unplaced-scaffold na na WOYB01000037.1 = NW_022986831.1 Primary Assembly 53407 na scaffold_76_arrow_ctg1 unplaced-scaffold na na WOYB01000038.1 = NW_022986832.1 Primary Assembly 51591 na scaffold_79_arrow_ctg1 unplaced-scaffold na na WOYB01000039.1 = NW_022986833.1 Primary Assembly 43306 na scaffold_81_arrow_ctg1 unplaced-scaffold na na WOYB01000040.1 = NW_022986834.1 Primary Assembly 42487 na scaffold_82_arrow_ctg1 unplaced-scaffold na na WOYB01000041.1 = NW_022986835.1 Primary Assembly 41078 na scaffold_84_arrow_ctg1 unplaced-scaffold na na WOYB01000042.1 = NW_022986836.1 Primary Assembly 36870 na scaffold_85_arrow_ctg1 unplaced-scaffold na na WOYB01000043.1 = NW_022986837.1 Primary Assembly 33246 na scaffold_86_arrow_ctg1 unplaced-scaffold na na WOYB01000044.1 = NW_022986838.1 Primary Assembly 27139 na scaffold_87_arrow_ctg1 unplaced-scaffold na na WOYB01000045.1 = NW_022986839.1 Primary Assembly 26166 na scaffold_88_arrow_ctg1 unplaced-scaffold na na WOYB01000046.1 = NW_022986840.1 Primary Assembly 26121 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WOYB01000047.1 = NW_022986841.1 Primary Assembly 24448 na scaffold_90_arrow_ctg1 unplaced-scaffold na na WOYB01000048.1 = NW_022986842.1 Primary Assembly 24841 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WOYB01000049.1 = NW_022986843.1 Primary Assembly 22290 na scaffold_93_arrow_ctg1 unplaced-scaffold na na WOYB01000050.1 = NW_022986844.1 Primary Assembly 21680 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WOYB01000051.1 = NW_022986845.1 Primary Assembly 20009 na scaffold_95_arrow_ctg1 unplaced-scaffold na na WOYB01000052.1 = NW_022986846.1 Primary Assembly 19576 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WOYB01000053.1 = NW_022986847.1 Primary Assembly 19330 na scaffold_97_arrow_ctg1 unplaced-scaffold na na WOYB01000054.1 = NW_022986848.1 Primary Assembly 15289 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WOYB01000055.1 = NW_022986849.1 Primary Assembly 14845 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WOYB01000056.1 = NW_022986850.1 Primary Assembly 10133 na MT assembled-molecule MT Mitochondrion na <> NC_009709.1 non-nuclear 17546 na fHipHip1_MT assembled-molecule MT Mitochondrion CM020214.1 <> na non-nuclear 17607 na