# Assembly name:  bAytFul2.pri
# Organism name:  Aythya fuligula (tufted duck)
# Isolate:  bAytFul2
# Sex:  female
# Taxid:          219594
# BioSample:      SAMN12621346
# BioProject:     PRJNA561952
# Submitter:      Vertebrate Genomes Project
# Date:           2019-12-31
# Assembly type:  haploid (principal pseudohaplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    WNMM01
# Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3; gEVAL manual curation v. 2019-09-20; VGP assembly pipeline individual v. 1.5
# Expected final version: no
# Genome coverage: 64.03x
# Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_009819795.1
# RefSeq assembly accession: GCF_009819795.1
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCA_009819845.1 (alternate pseudohaplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_009819815.1	GCF_009819815.1	Primary Assembly
## 	GCF_009910435.1	non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
Super_scaffold_1	assembled-molecule	1	Chromosome	CM020300.1	=	NC_045559.1	Primary Assembly	207018403	na
Super_scaffold_2	assembled-molecule	2	Chromosome	CM020301.1	=	NC_045560.1	Primary Assembly	159650012	na
Super_scaffold_3	assembled-molecule	3	Chromosome	CM020302.1	=	NC_045561.1	Primary Assembly	119491689	na
Super_scaffold_4	assembled-molecule	4	Chromosome	CM020303.1	=	NC_045562.1	Primary Assembly	76878203	na
Super_scaffold_6	assembled-molecule	5	Chromosome	CM020304.1	=	NC_045563.1	Primary Assembly	65067180	na
Super_scaffold_7	assembled-molecule	6	Chromosome	CM020305.1	=	NC_045564.1	Primary Assembly	39514636	na
Super_scaffold_9	assembled-molecule	7	Chromosome	CM020306.1	=	NC_045565.1	Primary Assembly	37840942	na
Super_scaffold_10	assembled-molecule	8	Chromosome	CM020307.1	=	NC_045566.1	Primary Assembly	32406295	na
Super_scaffold_11	assembled-molecule	9	Chromosome	CM020308.1	=	NC_045567.1	Primary Assembly	26499672	na
Super_scaffold_12	assembled-molecule	10	Chromosome	CM020309.1	=	NC_045568.1	Primary Assembly	22162769	na
Super_scaffold_13	assembled-molecule	11	Chromosome	CM020310.1	=	NC_045569.1	Primary Assembly	21928510	na
Super_scaffold_14	assembled-molecule	12	Chromosome	CM020311.1	=	NC_045570.1	Primary Assembly	21526058	na
Super_scaffold_15	assembled-molecule	13	Chromosome	CM020312.1	=	NC_045571.1	Primary Assembly	21228795	na
Super_scaffold_16	assembled-molecule	14	Chromosome	CM020313.1	=	NC_045572.1	Primary Assembly	19924658	na
Super_scaffold_17	assembled-molecule	15	Chromosome	CM020314.1	=	NC_045573.1	Primary Assembly	17816505	na
Super_scaffold_18	assembled-molecule	16	Chromosome	CM020315.1	=	NC_045574.1	Primary Assembly	16262610	na
Super_scaffold_22	assembled-molecule	17	Chromosome	CM020316.1	=	NC_045575.1	Primary Assembly	15484054	na
Super_scaffold_19	assembled-molecule	18	Chromosome	CM020317.1	=	NC_045576.1	Primary Assembly	12903739	na
Super_scaffold_8	assembled-molecule	19	Chromosome	CM020318.1	=	NC_045577.1	Primary Assembly	11953284	na
Super_scaffold_20	assembled-molecule	20	Chromosome	CM020319.1	=	NC_045578.1	Primary Assembly	11861279	na
Super_scaffold_23	assembled-molecule	21	Chromosome	CM020320.1	=	NC_045579.1	Primary Assembly	8424528	na
Super_scaffold_24	assembled-molecule	22	Chromosome	CM020321.1	=	NC_045580.1	Primary Assembly	7582326	na
Super_scaffold_25	assembled-molecule	23	Chromosome	CM020322.1	=	NC_045581.1	Primary Assembly	7507630	na
Super_scaffold_27	assembled-molecule	24	Chromosome	CM020323.1	=	NC_045582.1	Primary Assembly	6710917	na
Super_scaffold_26	assembled-molecule	25	Chromosome	CM020324.1	=	NC_045583.1	Primary Assembly	6693931	na
Super_scaffold_28	assembled-molecule	26	Chromosome	CM020325.1	=	NC_045584.1	Primary Assembly	5835185	na
Super_scaffold_29	assembled-molecule	27	Chromosome	CM020326.1	=	NC_045585.1	Primary Assembly	5453253	na
Super_scaffold_30	assembled-molecule	28	Chromosome	CM020327.1	=	NC_045586.1	Primary Assembly	3167070	na
Super_scaffold_31	assembled-molecule	29	Chromosome	CM020328.1	=	NC_045587.1	Primary Assembly	2844608	na
Super_scaffold_36	assembled-molecule	30	Chromosome	CM020329.1	=	NC_045588.1	Primary Assembly	1560659	na
Super_scaffold_33	assembled-molecule	31	Chromosome	CM020330.1	=	NC_045589.1	Primary Assembly	1405878	na
Super_scaffold_32	assembled-molecule	32	Chromosome	CM020331.1	=	NC_045590.1	Primary Assembly	1164621	na
Super_scaffold_34	assembled-molecule	33	Chromosome	CM020332.1	=	NC_045591.1	Primary Assembly	983965	na
Super_scaffold_35	assembled-molecule	34	Chromosome	CM020333.1	=	NC_045592.1	Primary Assembly	723082	na
Super_scaffold_5	assembled-molecule	Z	Chromosome	CM020334.1	=	NC_045593.1	Primary Assembly	85905639	na
Super_scaffold_21	assembled-molecule	W	Chromosome	CM020335.1	=	NC_045594.1	Primary Assembly	18736694	na
scaffold_100_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000037.1	=	NW_022473957.1	Primary Assembly	22640	na
scaffold_102_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000038.1	=	NW_022473958.1	Primary Assembly	22305	na
scaffold_104_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000039.1	=	NW_022473959.1	Primary Assembly	20877	na
scaffold_105_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000040.1	=	NW_022473960.1	Primary Assembly	20061	na
scaffold_107_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000041.1	=	NW_022473961.1	Primary Assembly	18754	na
scaffold_108_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000042.1	=	NW_022473962.1	Primary Assembly	16575	na
scaffold_109_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000043.1	=	NW_022473963.1	Primary Assembly	16342	na
scaffold_110_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000044.1	=	NW_022473964.1	Primary Assembly	15936	na
scaffold_112_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000045.1	=	NW_022473965.1	Primary Assembly	15474	na
scaffold_113_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000046.1	=	NW_022473966.1	Primary Assembly	14375	na
scaffold_114_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000047.1	=	NW_022473967.1	Primary Assembly	13881	na
scaffold_115_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000048.1	=	NW_022473968.1	Primary Assembly	13775	na
scaffold_116_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000049.1	=	NW_022473969.1	Primary Assembly	13115	na
scaffold_117_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000050.1	=	NW_022473970.1	Primary Assembly	13079	na
scaffold_118_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000051.1	=	NW_022473971.1	Primary Assembly	11849	na
scaffold_119_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000052.1	=	NW_022473972.1	Primary Assembly	10592	na
scaffold_120_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000053.1	=	NW_022473973.1	Primary Assembly	11132	na
scaffold_121_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000054.1	=	NW_022473974.1	Primary Assembly	6672	na
scaffold_122_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000055.1	=	NW_022473975.1	Primary Assembly	5679	na
scaffold_123_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000056.1	=	NW_022473976.1	Primary Assembly	3261	na
scaffold_124_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000057.1	=	NW_022473977.1	Primary Assembly	2927	na
scaffold_31_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000058.1	=	NW_022473978.1	Primary Assembly	78149	na
scaffold_31_arrow_ctg1_1	unplaced-scaffold	na	na	WNMM01000059.1	=	NW_022473979.1	Primary Assembly	132060	na
scaffold_31_arrow_ctg1_2	unplaced-scaffold	na	na	WNMM01000060.1	=	NW_022473980.1	Primary Assembly	91880	na
scaffold_31_arrow_ctg1_3	unplaced-scaffold	na	na	WNMM01000061.1	=	NW_022473981.1	Primary Assembly	142819	na
scaffold_31_arrow_ctg1_4	unplaced-scaffold	na	na	WNMM01000062.1	=	NW_022473982.1	Primary Assembly	54200	na
scaffold_31_arrow_ctg1_5	unplaced-scaffold	na	na	WNMM01000063.1	=	NW_022473983.1	Primary Assembly	131371	na
scaffold_32_arrow_ctg1_1	unplaced-scaffold	na	na	WNMM01000064.1	=	NW_022473984.1	Primary Assembly	95564	na
scaffold_37_arrow_ctg1_1	unplaced-scaffold	na	na	WNMM01000065.1	=	NW_022473986.1	Primary Assembly	109532	na
scaffold_37_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000066.1	=	NW_022473985.1	Primary Assembly	114173	na
scaffold_40_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000067.1	=	NW_022473987.1	Primary Assembly	102201	na
scaffold_46_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000068.1	=	NW_022473988.1	Primary Assembly	181274	na
scaffold_46_arrow_ctg1_1	unplaced-scaffold	na	na	WNMM01000069.1	=	NW_022473989.1	Primary Assembly	164880	na
scaffold_50_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000070.1	=	NW_022473990.1	Primary Assembly	574735	na
scaffold_52_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000071.1	=	NW_022473991.1	Primary Assembly	410890	na
scaffold_54_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000072.1	=	NW_022473992.1	Primary Assembly	294789	na
scaffold_57_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000073.1	=	NW_022473993.1	Primary Assembly	145857	na
scaffold_58_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000074.1	=	NW_022473994.1	Primary Assembly	127236	na
scaffold_60_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000075.1	=	NW_022473995.1	Primary Assembly	125289	na
scaffold_62_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000076.1	=	NW_022473996.1	Primary Assembly	120298	na
scaffold_63_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000077.1	=	NW_022473997.1	Primary Assembly	103287	na
scaffold_64_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000078.1	=	NW_022473998.1	Primary Assembly	101783	na
scaffold_65_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000079.1	=	NW_022473999.1	Primary Assembly	98892	na
scaffold_66_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000080.1	=	NW_022474000.1	Primary Assembly	96175	na
scaffold_68_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000081.1	=	NW_022474001.1	Primary Assembly	75354	na
scaffold_69_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000082.1	=	NW_022474002.1	Primary Assembly	67040	na
scaffold_70_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000083.1	=	NW_022474003.1	Primary Assembly	63589	na
scaffold_71_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000084.1	=	NW_022474004.1	Primary Assembly	61510	na
scaffold_72_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000085.1	=	NW_022474005.1	Primary Assembly	51808	na
scaffold_73_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000086.1	=	NW_022474006.1	Primary Assembly	51487	na
scaffold_75_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000087.1	=	NW_022474007.1	Primary Assembly	49062	na
scaffold_78_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000088.1	=	NW_022474008.1	Primary Assembly	41558	na
scaffold_79_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000089.1	=	NW_022474009.1	Primary Assembly	41166	na
scaffold_80_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000090.1	=	NW_022474010.1	Primary Assembly	40665	na
scaffold_81_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000091.1	=	NW_022474011.1	Primary Assembly	40169	na
scaffold_83_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000092.1	=	NW_022474012.1	Primary Assembly	38698	na
scaffold_84_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000093.1	=	NW_022474013.1	Primary Assembly	38058	na
scaffold_85_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000094.1	=	NW_022474014.1	Primary Assembly	37509	na
scaffold_87_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000095.1	=	NW_022474015.1	Primary Assembly	36335	na
scaffold_89_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000096.1	=	NW_022474016.1	Primary Assembly	34541	na
scaffold_91_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000097.1	=	NW_022474017.1	Primary Assembly	32799	na
scaffold_92_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000098.1	=	NW_022474018.1	Primary Assembly	32395	na
scaffold_94_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000099.1	=	NW_022474019.1	Primary Assembly	26160	na
scaffold_95_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000100.1	=	NW_022474020.1	Primary Assembly	24719	na
scaffold_96_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000101.1	=	NW_022474021.1	Primary Assembly	24755	na
scaffold_97_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000102.1	=	NW_022474022.1	Primary Assembly	24599	na
scaffold_98_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000103.1	=	NW_022474023.1	Primary Assembly	24505	na
scaffold_99_arrow_ctg1	unplaced-scaffold	na	na	WNMM01000104.1	=	NW_022474024.1	Primary Assembly	23714	na
MT	assembled-molecule	MT	Mitochondrion	na	<>	NC_024595.1	non-nuclear	16616	na