# Assembly name: fPerMag1.2.pri # Organism name: Periophthalmus magnuspinnatus (bony fishes) # Isolate: fPerMag1 # Sex: female # Taxid: 409849 # BioSample: SAMN12629500 # BioProject: PRJNA561998 # Submitter: Vertebrate Genomes Project # Date: 2023-03-21 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNMA01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. 51544-08-31; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-11; VGP assembly pipeline individual v. 1.6 # Expected final version: no # Genome coverage: 69.53x # Sequencing technology: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Reference Genome # GenBank assembly accession: GCA_009829125.3 # RefSeq assembly accession: GCF_009829125.3 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_009829135.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009829195.3 GCF_009829195.3 Primary Assembly ## GCA_009829215.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_8 assembled-molecule 1 Chromosome CM020591.1 = NC_047126.1 Primary Assembly 36052970 na SUPER_23 assembled-molecule 2 Chromosome CM020592.1 = NC_047127.1 Primary Assembly 19540339 na SUPER_2 assembled-molecule 3 Chromosome CM020593.1 = NC_047128.1 Primary Assembly 36957123 na SUPER_10 assembled-molecule 4 Chromosome CM020594.1 = NC_047129.1 Primary Assembly 35021165 na SUPER_6 assembled-molecule 5 Chromosome CM020595.1 = NC_047130.1 Primary Assembly 34011676 na SUPER_5 assembled-molecule 6 Chromosome CM020596.1 = NC_047131.1 Primary Assembly 33835733 na SUPER_19 assembled-molecule 7 Chromosome CM020597.1 = NC_047132.1 Primary Assembly 34908682 na SUPER_15 assembled-molecule 8 Chromosome CM020598.1 = NC_047133.1 Primary Assembly 29687151 na SUPER_16 assembled-molecule 9 Chromosome CM020599.1 = NC_047134.1 Primary Assembly 36171850 na SUPER_1 assembled-molecule 10 Chromosome CM020600.1 = NC_047135.1 Primary Assembly 36988977 na SUPER_13 assembled-molecule 11 Chromosome CM020601.2 = NC_047136.2 Primary Assembly 32464558 na SUPER_22 assembled-molecule 12 Chromosome CM020602.1 = NC_047137.1 Primary Assembly 19532153 na SUPER_9 assembled-molecule 13 Chromosome CM020603.1 = NC_047138.1 Primary Assembly 32620125 na SUPER_11 assembled-molecule 14 Chromosome CM020604.1 = NC_047139.1 Primary Assembly 32379725 na SUPER_4 assembled-molecule 15 Chromosome CM020605.1 = NC_047140.1 Primary Assembly 32865169 na SUPER_3 assembled-molecule 16 Chromosome CM020606.1 = NC_047141.1 Primary Assembly 33977497 na SUPER_12 assembled-molecule 17 Chromosome CM020607.1 = NC_047142.1 Primary Assembly 31521007 na SUPER_17 assembled-molecule 18 Chromosome CM020608.1 = NC_047143.1 Primary Assembly 28378236 na SUPER_14 assembled-molecule 19 Chromosome CM020609.1 = NC_047144.1 Primary Assembly 29583991 na SUPER_18 assembled-molecule 20 Chromosome CM020610.1 = NC_047145.1 Primary Assembly 28068090 na SUPER_7 assembled-molecule 21 Chromosome CM020611.1 = NC_047146.1 Primary Assembly 33436419 na SUPER_20 assembled-molecule 22 Chromosome CM020612.1 = NC_047147.1 Primary Assembly 29018424 na SUPER_21 assembled-molecule 23 Chromosome CM020613.1 = NC_047148.1 Primary Assembly 24170445 na SUPER_25 assembled-molecule 24 Chromosome CM020614.1 = NC_047149.1 Primary Assembly 27914776 na scaffold_105_arrow_ctg1 unplaced-scaffold na na WNMA01000026.1 = NW_022986697.1 Primary Assembly 66607 na scaffold_107_arrow_ctg1 unplaced-scaffold na na WNMA01000027.1 = NW_022986698.1 Primary Assembly 64372 na scaffold_108_arrow_ctg1 unplaced-scaffold na na WNMA01000028.1 = NW_022986699.1 Primary Assembly 63897 na scaffold_110_arrow_ctg1 unplaced-scaffold na na WNMA01000029.1 = NW_022986700.1 Primary Assembly 59813 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WNMA01000030.1 = NW_022986701.1 Primary Assembly 57324 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WNMA01000031.1 = NW_022986702.1 Primary Assembly 54356 na scaffold_124_arrow_ctg1 unplaced-scaffold na na WNMA01000032.1 = NW_022986703.1 Primary Assembly 52812 na scaffold_125_arrow_ctg1 unplaced-scaffold na na WNMA01000033.1 = NW_022986704.1 Primary Assembly 52581 na scaffold_133_arrow_ctg1 unplaced-scaffold na na WNMA01000034.1 = NW_022986705.1 Primary Assembly 47970 na scaffold_16_arrow_ctg1 unplaced-scaffold na na WNMA01000035.1 = NW_022986721.1 Primary Assembly 23732 na scaffold_136_arrow_ctg1 unplaced-scaffold na na WNMA01000036.1 = NW_022986706.1 Primary Assembly 46126 na scaffold_138_arrow_ctg1 unplaced-scaffold na na WNMA01000037.1 = NW_022986707.1 Primary Assembly 45442 na scaffold_31_arrow_ctg1 unplaced-scaffold na na WNMA01000038.1 = NW_022986783.1 Primary Assembly 66000 na scaffold_142_arrow_ctg1 unplaced-scaffold na na WNMA01000039.1 = NW_022986708.1 Primary Assembly 44407 na scaffold_143_arrow_ctg1 unplaced-scaffold na na WNMA01000040.1 = NW_022986709.1 Primary Assembly 44267 na scaffold_147_arrow_ctg1 unplaced-scaffold na na WNMA01000041.1 = NW_022986710.1 Primary Assembly 42661 na scaffold_149_arrow_ctg1 unplaced-scaffold na na WNMA01000042.1 = NW_022986711.1 Primary Assembly 42230 na scaffold_150_arrow_ctg1 unplaced-scaffold na na WNMA01000043.1 = NW_022986712.1 Primary Assembly 42068 na scaffold_151_arrow_ctg1 unplaced-scaffold na na WNMA01000044.1 = NW_022986713.1 Primary Assembly 40906 na scaffold_152_arrow_ctg1 unplaced-scaffold na na WNMA01000045.1 = NW_022986714.1 Primary Assembly 40452 na scaffold_159_arrow_ctg1 unplaced-scaffold na na WNMA01000046.1 = NW_022986715.1 Primary Assembly 38295 na scaffold_162_arrow_ctg1 unplaced-scaffold na na WNMA01000047.1 = NW_022986716.1 Primary Assembly 37133 na scaffold_164_arrow_ctg1 unplaced-scaffold na na WNMA01000048.1 = NW_022986717.1 Primary Assembly 37404 na scaffold_165_arrow_ctg1 unplaced-scaffold na na WNMA01000049.1 = NW_022986718.1 Primary Assembly 36108 na scaffold_167_arrow_ctg1 unplaced-scaffold na na WNMA01000050.1 = NW_022986719.1 Primary Assembly 35964 na scaffold_168_arrow_ctg1 unplaced-scaffold na na WNMA01000051.1 = NW_022986720.1 Primary Assembly 35944 na scaffold_172_arrow_ctg1 unplaced-scaffold na na WNMA01000052.1 = NW_022986722.1 Primary Assembly 35109 na scaffold_177_arrow_ctg1 unplaced-scaffold na na WNMA01000053.1 = NW_022986723.1 Primary Assembly 33501 na scaffold_179_arrow_ctg1 unplaced-scaffold na na WNMA01000054.1 = NW_022986724.1 Primary Assembly 33169 na scaffold_181_arrow_ctg1 unplaced-scaffold na na WNMA01000055.1 = NW_022986725.1 Primary Assembly 32559 na scaffold_182_arrow_ctg1 unplaced-scaffold na na WNMA01000056.1 = NW_022986726.1 Primary Assembly 32197 na scaffold_184_arrow_ctg1 unplaced-scaffold na na WNMA01000057.1 = NW_022986727.1 Primary Assembly 32282 na scaffold_190_arrow_ctg1 unplaced-scaffold na na WNMA01000058.1 = NW_022986728.1 Primary Assembly 30482 na scaffold_192_arrow_ctg1 unplaced-scaffold na na WNMA01000059.1 = NW_022986729.1 Primary Assembly 30040 na scaffold_194_arrow_ctg1 unplaced-scaffold na na WNMA01000060.1 = NW_022986730.1 Primary Assembly 29997 na scaffold_195_arrow_ctg1 unplaced-scaffold na na WNMA01000061.1 = NW_022986731.1 Primary Assembly 29962 na scaffold_200_arrow_ctg1 unplaced-scaffold na na WNMA01000062.1 = NW_022986732.1 Primary Assembly 29445 na scaffold_204_arrow_ctg1 unplaced-scaffold na na WNMA01000063.1 = NW_022986733.1 Primary Assembly 27564 na scaffold_212_arrow_ctg1 unplaced-scaffold na na WNMA01000064.1 = NW_022986734.1 Primary Assembly 24268 na scaffold_216_arrow_ctg1 unplaced-scaffold na na WNMA01000065.1 = NW_022986735.1 Primary Assembly 22661 na scaffold_217_arrow_ctg1 unplaced-scaffold na na WNMA01000066.1 = NW_022986736.1 Primary Assembly 22283 na scaffold_223_arrow_ctg1 unplaced-scaffold na na WNMA01000067.1 = NW_022986737.1 Primary Assembly 19780 na scaffold_224_arrow_ctg1 unplaced-scaffold na na WNMA01000068.1 = NW_022986738.1 Primary Assembly 19478 na scaffold_226_arrow_ctg1 unplaced-scaffold na na WNMA01000069.1 = NW_022986739.1 Primary Assembly 19394 na scaffold_227_arrow_ctg1 unplaced-scaffold na na WNMA01000070.1 = NW_022986740.1 Primary Assembly 19312 na scaffold_228_arrow_ctg1 unplaced-scaffold na na WNMA01000071.1 = NW_022986741.1 Primary Assembly 19320 na scaffold_230_arrow_ctg1 unplaced-scaffold na na WNMA01000072.1 = NW_022986742.1 Primary Assembly 19253 na scaffold_231_arrow_ctg1 unplaced-scaffold na na WNMA01000073.1 = NW_022986743.1 Primary Assembly 18686 na scaffold_232_arrow_ctg1 unplaced-scaffold na na WNMA01000074.1 = NW_022986744.1 Primary Assembly 18684 na scaffold_234_arrow_ctg1 unplaced-scaffold na na WNMA01000075.1 = NW_022986745.1 Primary Assembly 18238 na scaffold_235_arrow_ctg1 unplaced-scaffold na na WNMA01000076.1 = NW_022986746.1 Primary Assembly 18534 na scaffold_236_arrow_ctg1 unplaced-scaffold na na WNMA01000077.1 = NW_022986747.1 Primary Assembly 18323 na scaffold_237_arrow_ctg1 unplaced-scaffold na na WNMA01000078.1 = NW_022986748.1 Primary Assembly 18274 na scaffold_238_arrow_ctg1 unplaced-scaffold na na WNMA01000079.1 = NW_022986749.1 Primary Assembly 18209 na scaffold_241_arrow_ctg1 unplaced-scaffold na na WNMA01000080.1 = NW_022986750.1 Primary Assembly 17357 na scaffold_245_arrow_ctg1 unplaced-scaffold na na WNMA01000081.1 = NW_022986751.1 Primary Assembly 16441 na scaffold_247_arrow_ctg1 unplaced-scaffold na na WNMA01000082.1 = NW_022986752.1 Primary Assembly 15992 na scaffold_249_arrow_ctg1 unplaced-scaffold na na WNMA01000083.1 = NW_022986753.1 Primary Assembly 15784 na scaffold_250_arrow_ctg1 unplaced-scaffold na na WNMA01000084.1 = NW_022986754.1 Primary Assembly 15676 na scaffold_251_arrow_ctg1 unplaced-scaffold na na WNMA01000085.1 = NW_022986755.1 Primary Assembly 15561 na scaffold_252_arrow_ctg1 unplaced-scaffold na na WNMA01000086.1 = NW_022986756.1 Primary Assembly 15558 na scaffold_253_arrow_ctg1 unplaced-scaffold na na WNMA01000087.1 = NW_022986757.1 Primary Assembly 15247 na scaffold_255_arrow_ctg1 unplaced-scaffold na na WNMA01000088.1 = NW_022986758.1 Primary Assembly 13971 na scaffold_256_arrow_ctg1 unplaced-scaffold na na WNMA01000089.1 = NW_022986759.1 Primary Assembly 12405 na scaffold_257_arrow_ctg1 unplaced-scaffold na na WNMA01000090.1 = NW_022986760.1 Primary Assembly 12039 na scaffold_258_arrow_ctg1 unplaced-scaffold na na WNMA01000091.1 = NW_022986761.1 Primary Assembly 11831 na scaffold_259_arrow_ctg1 unplaced-scaffold na na WNMA01000092.1 = NW_022986762.1 Primary Assembly 11476 na scaffold_260_arrow_ctg1 unplaced-scaffold na na WNMA01000093.1 = NW_022986763.1 Primary Assembly 11138 na scaffold_261_arrow_ctg1 unplaced-scaffold na na WNMA01000094.1 = NW_022986764.1 Primary Assembly 10792 na scaffold_262_arrow_ctg1 unplaced-scaffold na na WNMA01000095.1 = NW_022986765.1 Primary Assembly 10538 na scaffold_263_arrow_ctg1 unplaced-scaffold na na WNMA01000096.1 = NW_022986766.1 Primary Assembly 10384 na scaffold_264_arrow_ctg1 unplaced-scaffold na na WNMA01000097.1 = NW_022986767.1 Primary Assembly 10339 na scaffold_265_arrow_ctg1 unplaced-scaffold na na WNMA01000098.1 = NW_022986768.1 Primary Assembly 10167 na scaffold_266_arrow_ctg1 unplaced-scaffold na na WNMA01000099.1 = NW_022986769.1 Primary Assembly 9765 na scaffold_267_arrow_ctg1 unplaced-scaffold na na WNMA01000100.1 = NW_022986770.1 Primary Assembly 9525 na scaffold_268_arrow_ctg1 unplaced-scaffold na na WNMA01000101.1 = NW_022986771.1 Primary Assembly 9408 na scaffold_269_arrow_ctg1 unplaced-scaffold na na WNMA01000102.1 = NW_022986772.1 Primary Assembly 7870 na scaffold_270_arrow_ctg1 unplaced-scaffold na na WNMA01000103.1 = NW_022986773.1 Primary Assembly 6199 na scaffold_271_arrow_ctg1 unplaced-scaffold na na WNMA01000104.1 = NW_022986774.1 Primary Assembly 5908 na scaffold_272_arrow_ctg1 unplaced-scaffold na na WNMA01000105.1 = NW_022986775.1 Primary Assembly 5726 na scaffold_273_arrow_ctg1 unplaced-scaffold na na WNMA01000106.1 = NW_022986776.1 Primary Assembly 4679 na scaffold_274_arrow_ctg1 unplaced-scaffold na na WNMA01000107.1 = NW_022986777.1 Primary Assembly 3858 na scaffold_275_arrow_ctg1 unplaced-scaffold na na WNMA01000108.1 = NW_022986778.1 Primary Assembly 3561 na scaffold_276_arrow_ctg1 unplaced-scaffold na na WNMA01000109.1 = NW_022986779.1 Primary Assembly 3426 na scaffold_277_arrow_ctg1 unplaced-scaffold na na WNMA01000110.1 = NW_022986780.1 Primary Assembly 2537 na scaffold_278_arrow_ctg1 unplaced-scaffold na na WNMA01000111.1 = NW_022986781.1 Primary Assembly 1749 na scaffold_279_arrow_ctg1 unplaced-scaffold na na WNMA01000112.1 = NW_022986782.1 Primary Assembly 838 na scaffold_48_arrow_ctg1 unplaced-scaffold na na WNMA01000113.1 = NW_022986784.1 Primary Assembly 84470 na scaffold_61_arrow_ctg1 unplaced-scaffold na na WNMA01000114.1 = NW_022986785.1 Primary Assembly 167174 na scaffold_62_arrow_ctg1 unplaced-scaffold na na WNMA01000115.1 = NW_022986786.1 Primary Assembly 156916 na scaffold_65_arrow_ctg1 unplaced-scaffold na na WNMA01000116.1 = NW_022986787.1 Primary Assembly 149798 na scaffold_67_arrow_ctg1 unplaced-scaffold na na WNMA01000117.1 = NW_022986788.1 Primary Assembly 138005 na scaffold_70_arrow_ctg1 unplaced-scaffold na na WNMA01000118.1 = NW_022986789.1 Primary Assembly 125154 na scaffold_73_arrow_ctg1 unplaced-scaffold na na WNMA01000119.1 = NW_022986790.1 Primary Assembly 114700 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WNMA01000120.1 = NW_022986791.1 Primary Assembly 94076 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WNMA01000121.1 = NW_022986792.1 Primary Assembly 83238 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WNMA01000122.1 = NW_022986793.1 Primary Assembly 74209 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WNMA01000123.1 = NW_022986794.1 Primary Assembly 73920 na fPerMag1_MT assembled-molecule MT Mitochondrion CM020616.1 <> na non-nuclear 16496 na