# Assembly name: bChiLan1.pri # Organism name: Chiroxiphia lanceolata (lance-tailed manakin) # Isolate: bChiLan1 # Sex: female # Taxid: 296741 # BioSample: SAMN12620979 # BioProject: PRJNA561943 # Submitter: Vertebrate Genomes Project # Date: 2020-01-03 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNMC01 # Assembly method: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; f # Expected final version: no # Genome coverage: 67.75x # Sequencing technology: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009829145.1 # RefSeq assembly accession: GCF_009829145.1 # RefSeq assembly and GenBank assemblies identical: yes # Linked assembly: GCA_009829205.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009829265.1 GCF_009829265.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_scaffold_11 assembled-molecule 1 Chromosome CM020533.1 = NC_045637.1 Primary Assembly 156344557 na Super_scaffold_2 assembled-molecule 2 Chromosome CM020534.1 = NC_045638.1 Primary Assembly 120403895 na Super_scaffold_3 assembled-molecule 3 Chromosome CM020535.1 = NC_045639.1 Primary Assembly 117283955 na Super_scaffold_4 assembled-molecule 4 Chromosome CM020536.1 = NC_045640.1 Primary Assembly 75848047 na Super_scaffold_5 assembled-molecule 5 Chromosome CM020537.1 = NC_045641.1 Primary Assembly 75608808 na Super_scaffold_1 assembled-molecule 6 Chromosome CM020538.1 = NC_045642.1 Primary Assembly 65727516 na Super_scaffold_6 assembled-molecule 7 Chromosome CM020539.1 = NC_045643.1 Primary Assembly 39976536 na Super_scaffold_8 assembled-molecule 8 Chromosome CM020540.1 = NC_045644.1 Primary Assembly 37671732 na Super_scaffold_9 assembled-molecule 9 Chromosome CM020541.1 = NC_045645.1 Primary Assembly 31492288 na Super_scaffold_10 assembled-molecule 10 Chromosome CM020542.1 = NC_045646.1 Primary Assembly 26476675 na Super_scaffold_12 assembled-molecule 11 Chromosome CM020543.1 = NC_045647.1 Primary Assembly 22063292 na Super_scaffold_13 assembled-molecule 12 Chromosome CM020544.1 = NC_045648.1 Primary Assembly 21528746 na Super_scaffold_14 assembled-molecule 13 Chromosome CM020545.1 = NC_045649.1 Primary Assembly 21201277 na Super_scaffold_15 assembled-molecule 14 Chromosome CM020546.1 = NC_045650.1 Primary Assembly 20729622 na Super_scaffold_16 assembled-molecule 15 Chromosome CM020547.1 = NC_045651.1 Primary Assembly 19292269 na Super_scaffold_17 assembled-molecule 16 Chromosome CM020548.1 = NC_045652.1 Primary Assembly 16875743 na Super_scaffold_19 assembled-molecule 17 Chromosome CM020549.1 = NC_045653.1 Primary Assembly 15378035 na Super_scaffold_20 assembled-molecule 18 Chromosome CM020550.1 = NC_045654.1 Primary Assembly 15077643 na Super_scaffold_23 assembled-molecule 19 Chromosome CM020551.1 = NC_045655.1 Primary Assembly 12698277 na Super_scaffold_24 assembled-molecule 20 Chromosome CM020552.1 = NC_045656.1 Primary Assembly 11790217 na Super_scaffold_25 assembled-molecule 21 Chromosome CM020553.1 = NC_045657.1 Primary Assembly 11781312 na Super_scaffold_26 assembled-molecule 22 Chromosome CM020554.1 = NC_045658.1 Primary Assembly 8077246 na Super_scaffold_27 assembled-molecule 23 Chromosome CM020555.1 = NC_045659.1 Primary Assembly 7394705 na Super_scaffold_21 assembled-molecule 24 Chromosome CM020556.1 = NC_045660.1 Primary Assembly 7312998 na Super_scaffold_28 assembled-molecule 25 Chromosome CM020557.1 = NC_045661.1 Primary Assembly 6921628 na Super_scaffold_29 assembled-molecule 26 Chromosome CM020558.1 = NC_045662.1 Primary Assembly 6726370 na Super_scaffold_22 assembled-molecule 27 Chromosome CM020559.1 = NC_045663.1 Primary Assembly 6261577 na Super_scaffold_30 assembled-molecule 28 Chromosome CM020560.1 = NC_045664.1 Primary Assembly 5392572 na Super_scaffold_31 assembled-molecule 29 Chromosome CM020561.1 = NC_045665.1 Primary Assembly 2725289 na Super_scaffold_32 assembled-molecule 30 Chromosome CM020562.1 = NC_045666.1 Primary Assembly 2418199 na Super_scaffold_33 assembled-molecule 31 Chromosome CM020563.1 = NC_045667.1 Primary Assembly 770156 na Super_scaffold_34 assembled-molecule 32 Chromosome CM020564.1 = NC_045668.1 Primary Assembly 746205 na Super_scaffold_35 assembled-molecule 33 Chromosome CM020565.1 = NC_045669.1 Primary Assembly 702628 na Super_scaffold_18 assembled-molecule W Chromosome CM020567.1 = NC_045670.1 Primary Assembly 16093816 na Super_scaffold_7 assembled-molecule Z Chromosome CM020566.1 = NC_045671.1 Primary Assembly 75361692 na scaffold_40_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000036.1 = NW_022476499.1 Primary Assembly 1031484 na scaffold_44_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000037.1 = NW_022476500.1 Primary Assembly 684270 na scaffold_46_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000038.1 = NW_022476501.1 Primary Assembly 587678 na scaffold_48_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000039.1 = NW_022476502.1 Primary Assembly 516588 na scaffold_51_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000040.1 = NW_022476503.1 Primary Assembly 345132 na scaffold_57_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000041.1 = NW_022476504.1 Primary Assembly 247130 na scaffold_58_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000042.1 = NW_022476505.1 Primary Assembly 234613 na scaffold_60_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000043.1 = NW_022476506.1 Primary Assembly 194081 na scaffold_69_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000044.1 = NW_022476507.1 Primary Assembly 100473 na scaffold_71_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000045.1 = NW_022476508.1 Primary Assembly 89331 na scaffold_78_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000046.1 = NW_022476509.1 Primary Assembly 52096 na scaffold_83_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000047.1 = NW_022476510.1 Primary Assembly 46245 na scaffold_104_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000048.1 = NW_022476495.1 Primary Assembly 25055 na scaffold_107_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000049.1 = NW_022476496.1 Primary Assembly 23832 na scaffold_112_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000050.1 = NW_022476497.1 Primary Assembly 22458 na scaffold_119_arrow_ctg1 unlocalized-scaffold W Chromosome WNMC01000051.1 = NW_022476498.1 Primary Assembly 14574 na scaffold_102_arrow_ctg1 unplaced-scaffold na na WNMC01000052.1 = NW_022476511.1 Primary Assembly 26194 na scaffold_103_arrow_ctg1 unplaced-scaffold na na WNMC01000053.1 = NW_022476512.1 Primary Assembly 25059 na scaffold_106_arrow_ctg1 unplaced-scaffold na na WNMC01000054.1 = NW_022476513.1 Primary Assembly 24052 na scaffold_108_arrow_ctg1 unplaced-scaffold na na WNMC01000055.1 = NW_022476514.1 Primary Assembly 23706 na scaffold_109_arrow_ctg1 unplaced-scaffold na na WNMC01000056.1 = NW_022476515.1 Primary Assembly 23518 na scaffold_110_arrow_ctg1 unplaced-scaffold na na WNMC01000057.1 = NW_022476516.1 Primary Assembly 22997 na scaffold_113_arrow_ctg1 unplaced-scaffold na na WNMC01000058.1 = NW_022476517.1 Primary Assembly 22444 na scaffold_114_arrow_ctg1 unplaced-scaffold na na WNMC01000059.1 = NW_022476518.1 Primary Assembly 22283 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WNMC01000060.1 = NW_022476519.1 Primary Assembly 21950 na scaffold_117_arrow_ctg1 unplaced-scaffold na na WNMC01000061.1 = NW_022476520.1 Primary Assembly 21218 na scaffold_118_arrow_ctg1 unplaced-scaffold na na WNMC01000062.1 = NW_022476521.1 Primary Assembly 21158 na scaffold_120_arrow_ctg1 unplaced-scaffold na na WNMC01000063.1 = NW_022476522.1 Primary Assembly 6217 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WNMC01000064.1 = NW_022476523.1 Primary Assembly 202 na scaffold_49_arrow_ctg1 unplaced-scaffold na na WNMC01000065.1 = NW_022476524.1 Primary Assembly 479605 na scaffold_52_arrow_ctg1 unplaced-scaffold na na WNMC01000066.1 = NW_022476525.1 Primary Assembly 316019 na scaffold_53_arrow_ctg1 unplaced-scaffold na na WNMC01000067.1 = NW_022476526.1 Primary Assembly 304253 na scaffold_59_arrow_ctg1 unplaced-scaffold na na WNMC01000068.1 = NW_022476527.1 Primary Assembly 205272 na scaffold_61_arrow_ctg1 unplaced-scaffold na na WNMC01000069.1 = NW_022476528.1 Primary Assembly 187028 na scaffold_62_arrow_ctg1 unplaced-scaffold na na WNMC01000070.1 = NW_022476529.1 Primary Assembly 180651 na scaffold_65_arrow_ctg1 unplaced-scaffold na na WNMC01000071.1 = NW_022476530.1 Primary Assembly 136825 na scaffold_66_arrow_ctg1 unplaced-scaffold na na WNMC01000072.1 = NW_022476531.1 Primary Assembly 130331 na scaffold_67_arrow_ctg1 unplaced-scaffold na na WNMC01000073.1 = NW_022476532.1 Primary Assembly 125812 na scaffold_68_arrow_ctg1 unplaced-scaffold na na WNMC01000074.1 = NW_022476533.1 Primary Assembly 116610 na scaffold_73_arrow_ctg1 unplaced-scaffold na na WNMC01000075.1 = NW_022476534.1 Primary Assembly 69728 na scaffold_74_arrow_ctg1 unplaced-scaffold na na WNMC01000076.1 = NW_022476535.1 Primary Assembly 66880 na scaffold_76_arrow_ctg1 unplaced-scaffold na na WNMC01000077.1 = NW_022476536.1 Primary Assembly 60429 na scaffold_79_arrow_ctg1 unplaced-scaffold na na WNMC01000078.1 = NW_022476537.1 Primary Assembly 52475 na scaffold_80_arrow_ctg1 unplaced-scaffold na na WNMC01000079.1 = NW_022476538.1 Primary Assembly 50867 na scaffold_81_arrow_ctg1 unplaced-scaffold na na WNMC01000080.1 = NW_022476539.1 Primary Assembly 49556 na scaffold_82_arrow_ctg1 unplaced-scaffold na na WNMC01000081.1 = NW_022476540.1 Primary Assembly 49358 na scaffold_84_arrow_ctg1 unplaced-scaffold na na WNMC01000082.1 = NW_022476541.1 Primary Assembly 44862 na scaffold_86_arrow_ctg1 unplaced-scaffold na na WNMC01000083.1 = NW_022476542.1 Primary Assembly 38780 na scaffold_88_arrow_ctg1 unplaced-scaffold na na WNMC01000084.1 = NW_022476543.1 Primary Assembly 38609 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WNMC01000085.1 = NW_022476544.1 Primary Assembly 38629 na scaffold_91_arrow_ctg1 unplaced-scaffold na na WNMC01000086.1 = NW_022476545.1 Primary Assembly 36389 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WNMC01000087.1 = NW_022476546.1 Primary Assembly 35108 na scaffold_93_arrow_ctg1 unplaced-scaffold na na WNMC01000088.1 = NW_022476547.1 Primary Assembly 33593 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WNMC01000089.1 = NW_022476548.1 Primary Assembly 32118 na scaffold_95_arrow_ctg1 unplaced-scaffold na na WNMC01000090.1 = NW_022476549.1 Primary Assembly 32037 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WNMC01000091.1 = NW_022476550.1 Primary Assembly 30154 na scaffold_97_arrow_ctg1 unplaced-scaffold na na WNMC01000092.1 = NW_022476551.1 Primary Assembly 29670 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WNMC01000093.1 = NW_022476552.1 Primary Assembly 28389 na