# Assembly name: mBalMus1.pri.v3 # Organism name: Balaenoptera musculus (blue whale) # Isolate: JJ_BM4_2016_0621 # Sex: male # Taxid: 9771 # BioSample: SAMN12287136 # BioProject: PRJNA554522 # Submitter: G10K # Date: 2020-10-02 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VNFC03 # Assembly method: FALCON v. 1.0.2; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; Arrow polishing and gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-10-25; VGP standard assembly pipeline v. 1.5; Additional Purge_dup and Polish v. 2020-05-28 # Expected final version: no # Genome coverage: 51.16x # Sequencing technology: PacBio Sequel I; Illumina NovaSeq; 10X Genomics chromium; Dovetail Genomics HiC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009873245.3 # RefSeq assembly accession: GCF_009873245.2 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_008658375.2 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009873255.3 GCF_009873255.2 Primary Assembly ## GCA_009873265.3 GCF_014931555.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_scaffold_1 assembled-molecule 1 Chromosome CM020941.2 = NC_045785.1 Primary Assembly 184938300 na Super_scaffold_11 assembled-molecule 2 Chromosome CM020942.2 = NC_045786.1 Primary Assembly 175897734 na Super_scaffold_3 assembled-molecule 3 Chromosome CM020943.2 = NC_045787.1 Primary Assembly 171266408 na Super_scaffold_6 assembled-molecule 4 Chromosome CM020944.2 = NC_045788.1 Primary Assembly 144968589 na Super_scaffold_9 assembled-molecule 5 Chromosome CM020945.2 = NC_045789.1 Primary Assembly 140689829 na Super_scaffold_10 assembled-molecule 6 Chromosome CM020946.2 = NC_045790.1 Primary Assembly 116510015 na Super_scaffold_19 assembled-molecule 7 Chromosome CM020947.2 = NC_045791.1 Primary Assembly 113414938 na Super_scaffold_4 assembled-molecule 8 Chromosome CM020948.2 = NC_045792.1 Primary Assembly 110314666 na Super_scaffold_5 assembled-molecule 9 Chromosome CM020949.2 = NC_045793.1 Primary Assembly 107421550 na Super_scaffold_14 assembled-molecule 10 Chromosome CM020950.2 = NC_045794.1 Primary Assembly 104744437 na Super_scaffold_7 assembled-molecule 11 Chromosome CM020951.2 = NC_045795.1 Primary Assembly 104068540 na Super_scaffold_17 assembled-molecule 12 Chromosome CM020952.2 = NC_045796.1 Primary Assembly 91445419 na Super_scaffold_22 assembled-molecule 13 Chromosome CM020953.2 = NC_045797.1 Primary Assembly 90635089 na Super_scaffold_16 assembled-molecule 14 Chromosome CM020954.2 = NC_045798.1 Primary Assembly 90457838 na Super_scaffold_18 assembled-molecule 15 Chromosome CM020955.2 = NC_045799.1 Primary Assembly 88470553 na Super_scaffold_2 assembled-molecule 16 Chromosome CM020956.2 = NC_045800.1 Primary Assembly 86152963 na Super_scaffold_20 assembled-molecule 17 Chromosome CM020957.2 = NC_045801.1 Primary Assembly 81207215 na Super_scaffold_12 assembled-molecule 18 Chromosome CM020958.2 = NC_045802.1 Primary Assembly 79663398 na Super_scaffold_15 assembled-molecule 19 Chromosome CM020959.2 = NC_045803.1 Primary Assembly 60735208 na Super_scaffold_13 assembled-molecule 20 Chromosome CM020960.2 = NC_045804.1 Primary Assembly 60304989 na Super_scaffold_21 assembled-molecule 21 Chromosome CM020961.2 = NC_045805.1 Primary Assembly 36241783 na Super_scaffold_8 assembled-molecule X Chromosome CM020962.2 = NC_045806.1 Primary Assembly 128877148 na Super_scaffold_23 assembled-molecule Y Chromosome CM020963.2 = NC_045807.1 Primary Assembly 2349494 na scaffold_100_arrow_ctg1 unplaced-scaffold na na VNFC03000023.1 = NW_023503195.1 Primary Assembly 43245 na scaffold_101_arrow_ctg1 unplaced-scaffold na na VNFC03000025.1 = NW_023503196.1 Primary Assembly 42862 na scaffold_103_arrow_ctg1 unplaced-scaffold na na VNFC03000026.1 = NW_023503198.1 Primary Assembly 41704 na scaffold_102_arrow_ctg1 unplaced-scaffold na na VNFC03000027.1 = NW_023503197.1 Primary Assembly 41599 na scaffold_105_arrow_ctg1 unplaced-scaffold na na VNFC03000028.1 = NW_023503199.1 Primary Assembly 39797 na scaffold_107_arrow_ctg1 unplaced-scaffold na na VNFC03000029.1 = NW_023503201.1 Primary Assembly 38399 na scaffold_106_arrow_ctg1 unplaced-scaffold na na VNFC03000030.1 = NW_023503200.1 Primary Assembly 39302 na scaffold_108_arrow_ctg1 unplaced-scaffold na na VNFC03000031.1 = NW_023503202.1 Primary Assembly 37772 na scaffold_109_arrow_ctg1 unplaced-scaffold na na VNFC03000032.1 = NW_023503203.1 Primary Assembly 37334 na scaffold_111_arrow_ctg1 unplaced-scaffold na na VNFC03000033.1 = NW_023503205.1 Primary Assembly 36955 na scaffold_110_arrow_ctg1 unplaced-scaffold na na VNFC03000034.1 = NW_023503204.1 Primary Assembly 37606 na scaffold_112_arrow_ctg1 unplaced-scaffold na na VNFC03000035.1 = NW_023503206.1 Primary Assembly 36240 na scaffold_114_arrow_ctg1 unplaced-scaffold na na VNFC03000036.1 = NW_023503208.1 Primary Assembly 36105 na scaffold_113_arrow_ctg1 unplaced-scaffold na na VNFC03000037.1 = NW_023503207.1 Primary Assembly 36090 na scaffold_118_arrow_ctg1 unplaced-scaffold na na VNFC03000038.1 = NW_023503211.1 Primary Assembly 35402 na scaffold_117_arrow_ctg1 unplaced-scaffold na na VNFC03000039.1 = NW_023503210.1 Primary Assembly 35455 na scaffold_116_arrow_ctg1 unplaced-scaffold na na VNFC03000040.1 = NW_023503209.1 Primary Assembly 35504 na scaffold_120_arrow_ctg1 unplaced-scaffold na na VNFC03000041.1 = NW_023503212.1 Primary Assembly 34465 na scaffold_121_arrow_ctg1 unplaced-scaffold na na VNFC03000042.1 = NW_023503213.1 Primary Assembly 34412 na scaffold_123_arrow_ctg1 unplaced-scaffold na na VNFC03000043.1 = NW_023503214.1 Primary Assembly 33942 na scaffold_125_arrow_ctg1 unplaced-scaffold na na VNFC03000044.1 = NW_023503216.1 Primary Assembly 33401 na scaffold_124_arrow_ctg1 unplaced-scaffold na na VNFC03000045.1 = NW_023503215.1 Primary Assembly 33586 na scaffold_127_arrow_ctg1 unplaced-scaffold na na VNFC03000046.1 = NW_023503218.1 Primary Assembly 32664 na scaffold_126_arrow_ctg1 unplaced-scaffold na na VNFC03000047.1 = NW_023503217.1 Primary Assembly 18505 na scaffold_128_arrow_ctg1 unplaced-scaffold na na VNFC03000048.1 = NW_023503219.1 Primary Assembly 32610 na scaffold_132_arrow_ctg1 unplaced-scaffold na na VNFC03000049.1 = NW_023503221.1 Primary Assembly 30867 na scaffold_130_arrow_ctg1 unplaced-scaffold na na VNFC03000050.1 = NW_023503220.1 Primary Assembly 31229 na scaffold_136_arrow_ctg1 unplaced-scaffold na na VNFC03000051.1 = NW_023503224.1 Primary Assembly 29730 na scaffold_137_arrow_ctg1 unplaced-scaffold na na VNFC03000052.1 = NW_023503225.1 Primary Assembly 29504 na scaffold_135_arrow_ctg1 unplaced-scaffold na na VNFC03000053.1 = NW_023503223.1 Primary Assembly 29993 na scaffold_133_arrow_ctg1 unplaced-scaffold na na VNFC03000054.1 = NW_023503222.1 Primary Assembly 30796 na scaffold_142_arrow_ctg1 unplaced-scaffold na na VNFC03000055.1 = NW_023503229.1 Primary Assembly 27039 na scaffold_141_arrow_ctg1 unplaced-scaffold na na VNFC03000056.1 = NW_023503228.1 Primary Assembly 27194 na scaffold_145_arrow_ctg1 unplaced-scaffold na na VNFC03000057.1 = NW_023503232.1 Primary Assembly 26721 na scaffold_147_arrow_ctg1 unplaced-scaffold na na VNFC03000058.1 = NW_023503233.1 Primary Assembly 26171 na scaffold_140_arrow_ctg1 unplaced-scaffold na na VNFC03000059.1 = NW_023503227.1 Primary Assembly 27894 na scaffold_143_arrow_ctg1 unplaced-scaffold na na VNFC03000060.1 = NW_023503230.1 Primary Assembly 26796 na scaffold_153_arrow_ctg1 unplaced-scaffold na na VNFC03000061.1 = NW_023503236.1 Primary Assembly 25081 na scaffold_154_arrow_ctg1 unplaced-scaffold na na VNFC03000062.1 = NW_023503237.1 Primary Assembly 24858 na scaffold_138_arrow_ctg1 unplaced-scaffold na na VNFC03000063.1 = NW_023503226.1 Primary Assembly 28679 na scaffold_144_arrow_ctg1 unplaced-scaffold na na VNFC03000064.1 = NW_023503231.1 Primary Assembly 26753 na scaffold_148_arrow_ctg1 unplaced-scaffold na na VNFC03000065.1 = NW_023503234.1 Primary Assembly 26090 na scaffold_152_arrow_ctg1 unplaced-scaffold na na VNFC03000066.1 = NW_023503235.1 Primary Assembly 25221 na scaffold_158_arrow_ctg1 unplaced-scaffold na na VNFC03000067.1 = NW_023503238.1 Primary Assembly 23961 na scaffold_161_arrow_ctg1 unplaced-scaffold na na VNFC03000068.1 = NW_023503239.1 Primary Assembly 22306 na scaffold_164_arrow_ctg1 unplaced-scaffold na na VNFC03000069.1 = NW_023503240.1 Primary Assembly 20703 na scaffold_167_arrow_ctg1 unplaced-scaffold na na VNFC03000070.1 = NW_023503241.1 Primary Assembly 610 na scaffold_56_arrow_ctg1 unplaced-scaffold na na VNFC03000071.1 = NW_023503242.1 Primary Assembly 370027 na scaffold_59_arrow_ctg1 unplaced-scaffold na na VNFC03000072.1 = NW_023503243.1 Primary Assembly 230261 na scaffold_62_arrow_ctg1 unplaced-scaffold na na VNFC03000073.1 = NW_023503244.1 Primary Assembly 86998 na scaffold_64_arrow_ctg1 unplaced-scaffold na na VNFC03000074.1 = NW_023503245.1 Primary Assembly 126946 na scaffold_66_arrow_ctg1 unplaced-scaffold na na VNFC03000075.1 = NW_023503246.1 Primary Assembly 101645 na scaffold_68_arrow_ctg1 unplaced-scaffold na na VNFC03000076.1 = NW_023503248.1 Primary Assembly 94179 na scaffold_67_arrow_ctg1 unplaced-scaffold na na VNFC03000077.1 = NW_023503247.1 Primary Assembly 95398 na scaffold_69_arrow_ctg1 unplaced-scaffold na na VNFC03000078.1 = NW_023503249.1 Primary Assembly 77556 na scaffold_70_arrow_ctg1 unplaced-scaffold na na VNFC03000079.1 = NW_023503250.1 Primary Assembly 70156 na scaffold_71_arrow_ctg1 unplaced-scaffold na na VNFC03000080.1 = NW_023503251.1 Primary Assembly 67718 na scaffold_73_arrow_ctg1 unplaced-scaffold na na VNFC03000081.1 = NW_023503252.1 Primary Assembly 37354 na scaffold_75_arrow_ctg1 unplaced-scaffold na na VNFC03000082.1 = NW_023503253.1 Primary Assembly 58865 na scaffold_76_arrow_ctg1 unplaced-scaffold na na VNFC03000083.1 = NW_023503254.1 Primary Assembly 43216 na scaffold_78_arrow_ctg1 unplaced-scaffold na na VNFC03000084.1 = NW_023503256.1 Primary Assembly 57125 na scaffold_77_arrow_ctg1 unplaced-scaffold na na VNFC03000085.1 = NW_023503255.1 Primary Assembly 57191 na scaffold_79_arrow_ctg1 unplaced-scaffold na na VNFC03000086.1 = NW_023503257.1 Primary Assembly 57087 na scaffold_80_arrow_ctg1 unplaced-scaffold na na VNFC03000087.1 = NW_023503258.1 Primary Assembly 57183 na scaffold_81_arrow_ctg1 unplaced-scaffold na na VNFC03000088.1 = NW_023503259.1 Primary Assembly 57169 na scaffold_82_arrow_ctg1 unplaced-scaffold na na VNFC03000089.1 = NW_023503260.1 Primary Assembly 55739 na scaffold_83_arrow_ctg1 unplaced-scaffold na na VNFC03000090.1 = NW_023503261.1 Primary Assembly 54956 na scaffold_84_arrow_ctg1 unplaced-scaffold na na VNFC03000091.1 = NW_023503262.1 Primary Assembly 54932 na scaffold_85_arrow_ctg1 unplaced-scaffold na na VNFC03000092.1 = NW_023503263.1 Primary Assembly 53534 na scaffold_86_arrow_ctg1 unplaced-scaffold na na VNFC03000093.1 = NW_023503264.1 Primary Assembly 52805 na scaffold_87_arrow_ctg1 unplaced-scaffold na na VNFC03000094.1 = NW_023503265.1 Primary Assembly 52559 na scaffold_88_arrow_ctg1 unplaced-scaffold na na VNFC03000095.1 = NW_023503266.1 Primary Assembly 51883 na scaffold_89_arrow_ctg1 unplaced-scaffold na na VNFC03000096.1 = NW_023503267.1 Primary Assembly 50883 na scaffold_90_arrow_ctg1 unplaced-scaffold na na VNFC03000097.1 = NW_023503268.1 Primary Assembly 50594 na scaffold_91_arrow_ctg1 unplaced-scaffold na na VNFC03000098.1 = NW_023503269.1 Primary Assembly 50551 na scaffold_93_arrow_ctg1 unplaced-scaffold na na VNFC03000099.1 = NW_023503271.1 Primary Assembly 50352 na scaffold_94_arrow_ctg1 unplaced-scaffold na na VNFC03000100.1 = NW_023503272.1 Primary Assembly 47414 na scaffold_95_arrow_ctg1 unplaced-scaffold na na VNFC03000101.1 = NW_023503273.1 Primary Assembly 46677 na scaffold_92_arrow_ctg1 unplaced-scaffold na na VNFC03000102.1 = NW_023503270.1 Primary Assembly 50364 na scaffold_96_arrow_ctg1 unplaced-scaffold na na VNFC03000103.1 = NW_023503274.1 Primary Assembly 46137 na scaffold_99_arrow_ctg1 unplaced-scaffold na na VNFC03000104.1 = NW_023503276.1 Primary Assembly 43709 na scaffold_97_arrow_ctg1 unplaced-scaffold na na VNFC03000105.1 = NW_023503275.1 Primary Assembly 44123 na MT assembled-molecule MT Mitochondrion na <> NC_001601.1 non-nuclear 16402 na mBalMus1_MT assembled-molecule MT Mitochondrion CM018075.1 <> na non-nuclear 16403 na