# Assembly name: fEsoLuc1.pri # Organism name: Esox lucius (northern pike) # Isolate: fEsoLuc1 # Taxid: 8010 # BioSample: SAMN12623624 # BioProject: PRJNA561977 # Submitter: Vertebrate Genomes Project # Date: 2020-03-05 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAAIYR01 # Assembly method: FALCON DNANexus v. 1.9.0; FALCON-Unzip DNANexus v. 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-01-10; VGP assembly pipeline v. 1.5 # Expected final version: no # Genome coverage: 1.0x # Sequencing technology: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_011004845.1 # RefSeq assembly accession: GCF_011004845.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_011004835.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_011004935.1 GCF_011004935.1 Primary Assembly ## GCA_011005005.1 GCF_000040255.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM021593.1 = NC_047569.1 Primary Assembly 43167732 na SUPER_2 assembled-molecule 2 Chromosome CM021594.1 = NC_047570.1 Primary Assembly 39970751 na SUPER_3 assembled-molecule 3 Chromosome CM021595.1 = NC_047571.1 Primary Assembly 36486603 na SUPER_4 assembled-molecule 4 Chromosome CM021596.1 = NC_047572.1 Primary Assembly 34969986 na SUPER_5 assembled-molecule 5 Chromosome CM021597.1 = NC_047573.1 Primary Assembly 38248258 na SUPER_6 assembled-molecule 6 Chromosome CM021598.1 = NC_047574.1 Primary Assembly 31418460 na SUPER_7 assembled-molecule 7 Chromosome CM021599.1 = NC_047575.1 Primary Assembly 50849486 na SUPER_8 assembled-molecule 8 Chromosome CM021600.1 = NC_047576.1 Primary Assembly 38781828 na SUPER_9 assembled-molecule 9 Chromosome CM021601.1 = NC_047577.1 Primary Assembly 26064393 na SUPER_10 assembled-molecule 10 Chromosome CM021602.1 = NC_047578.1 Primary Assembly 30920508 na SUPER_11 assembled-molecule 11 Chromosome CM021603.1 = NC_047579.1 Primary Assembly 55408060 na SUPER_12 assembled-molecule 12 Chromosome CM021604.1 = NC_047580.1 Primary Assembly 37358143 na SUPER_13 assembled-molecule 13 Chromosome CM021605.1 = NC_047581.1 Primary Assembly 39760776 na SUPER_14 assembled-molecule 14 Chromosome CM021606.1 = NC_047582.1 Primary Assembly 37473588 na SUPER_15 assembled-molecule 15 Chromosome CM021607.1 = NC_047583.1 Primary Assembly 35391273 na SUPER_16 assembled-molecule 16 Chromosome CM021608.1 = NC_047584.1 Primary Assembly 34844506 na SUPER_17 assembled-molecule 17 Chromosome CM021609.1 = NC_047585.1 Primary Assembly 48487768 na SUPER_18 assembled-molecule 18 Chromosome CM021610.1 = NC_047586.1 Primary Assembly 28550130 na SUPER_19 assembled-molecule 19 Chromosome CM021611.1 = NC_047587.1 Primary Assembly 47534874 na SUPER_20 assembled-molecule 20 Chromosome CM021612.1 = NC_047588.1 Primary Assembly 45703413 na SUPER_21 assembled-molecule 21 Chromosome CM021613.1 = NC_047589.1 Primary Assembly 32541831 na SUPER_22 assembled-molecule 22 Chromosome CM021614.1 = NC_047590.1 Primary Assembly 25236946 na SUPER_23 assembled-molecule 23 Chromosome CM021615.1 = NC_047591.1 Primary Assembly 25372640 na SUPER_24 assembled-molecule 24 Chromosome CM021616.1 = NC_047592.1 Primary Assembly 29716333 na SUPER_25 assembled-molecule 25 Chromosome CM021617.1 = NC_047593.1 Primary Assembly 22595819 na S26 unplaced-scaffold na na JAAIYR010000026.1 = NW_022995024.1 Primary Assembly 229003 na S27 unplaced-scaffold na na JAAIYR010000027.1 = NW_022995025.1 Primary Assembly 130927 na S28 unplaced-scaffold na na JAAIYR010000028.1 = NW_022995026.1 Primary Assembly 91183 na scaffold_42_arrow_ctg1 unplaced-scaffold na na JAAIYR010000029.1 = NW_022995027.1 Primary Assembly 162128 na scaffold_44_arrow_ctg1 unplaced-scaffold na na JAAIYR010000030.1 = NW_022995028.1 Primary Assembly 133824 na scaffold_47_arrow_ctg1 unplaced-scaffold na na JAAIYR010000031.1 = NW_022995029.1 Primary Assembly 127474 na scaffold_48_arrow_ctg1 unplaced-scaffold na na JAAIYR010000032.1 = NW_022995030.1 Primary Assembly 126222 na scaffold_49_arrow_ctg1 unplaced-scaffold na na JAAIYR010000033.1 = NW_022995031.1 Primary Assembly 122495 na scaffold_50_arrow_ctg1 unplaced-scaffold na na JAAIYR010000034.1 = NW_022995032.1 Primary Assembly 119936 na scaffold_53_arrow_ctg1 unplaced-scaffold na na JAAIYR010000035.1 = NW_022995033.1 Primary Assembly 86212 na scaffold_55_arrow_ctg1 unplaced-scaffold na na JAAIYR010000036.1 = NW_022995034.1 Primary Assembly 75415 na scaffold_57_arrow_ctg1 unplaced-scaffold na na JAAIYR010000037.1 = NW_022995035.1 Primary Assembly 70839 na scaffold_58_arrow_ctg1 unplaced-scaffold na na JAAIYR010000038.1 = NW_022995036.1 Primary Assembly 63962 na scaffold_61_arrow_ctg1 unplaced-scaffold na na JAAIYR010000039.1 = NW_022995037.1 Primary Assembly 44005 na scaffold_64_arrow_ctg1 unplaced-scaffold na na JAAIYR010000040.1 = NW_022995038.1 Primary Assembly 36733 na scaffold_65_arrow_ctg1 unplaced-scaffold na na JAAIYR010000041.1 = NW_022995039.1 Primary Assembly 33925 na scaffold_66_arrow_ctg1 unplaced-scaffold na na JAAIYR010000042.1 = NW_022995040.1 Primary Assembly 29968 na scaffold_67_arrow_ctg1 unplaced-scaffold na na JAAIYR010000043.1 = NW_022995041.1 Primary Assembly 26489 na scaffold_68_arrow_ctg1 unplaced-scaffold na na JAAIYR010000044.1 = NW_022995042.1 Primary Assembly 26184 na scaffold_69_arrow_ctg1 unplaced-scaffold na na JAAIYR010000045.1 = NW_022995043.1 Primary Assembly 25679 na scaffold_70_arrow_ctg1 unplaced-scaffold na na JAAIYR010000046.1 = NW_022995044.1 Primary Assembly 25130 na scaffold_71_arrow_ctg1 unplaced-scaffold na na JAAIYR010000047.1 = NW_022995045.1 Primary Assembly 21943 na scaffold_72_arrow_ctg1 unplaced-scaffold na na JAAIYR010000048.1 = NW_022995046.1 Primary Assembly 21430 na scaffold_73_arrow_ctg1 unplaced-scaffold na na JAAIYR010000049.1 = NW_022995047.1 Primary Assembly 20053 na scaffold_74_arrow_ctg1 unplaced-scaffold na na JAAIYR010000050.1 = NW_022995048.1 Primary Assembly 12711 na scaffold_75_arrow_ctg1 unplaced-scaffold na na JAAIYR010000051.1 = NW_022995049.1 Primary Assembly 10145 na scaffold_76_arrow_ctg1 unplaced-scaffold na na JAAIYR010000052.1 = NW_022995050.1 Primary Assembly 3799 na MT assembled-molecule MT Mitochondrion na <> NC_004593.1 non-nuclear 16695 na fEsoLuc1_MT assembled-molecule MT Mitochondrion CM021655.1 <> na non-nuclear 17081 na