# Assembly name: CAS_Tse_1.0 # Organism name: Trachemys scripta elegans (red-eared slider turtle) # Isolate: TJP31775 # Taxid: 31138 # BioSample: SAMN12189062 # BioProject: PRJNA552319 # Submitter: California Academy of Sciences # Date: 2020-05-15 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VIRI01 # Assembly method: Supernova v. 1.2 # Expected final version: no # Genome coverage: 60.0x # Sequencing technology: Illumina NovaSeq; PacBio # RefSeq category: Representative Genome # GenBank assembly accession: GCA_013100865.1 # RefSeq assembly accession: GCF_013100865.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_013100875.1 GCF_013100875.1 Primary Assembly ## GCF_013176925.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM023056.1 = NC_048298.1 Primary Assembly 347660827 na chr2 assembled-molecule 2 Chromosome CM023057.1 = NC_048299.1 Primary Assembly 283098403 na chr3 assembled-molecule 3 Chromosome CM023058.1 = NC_048300.1 Primary Assembly 201239519 na chr4 assembled-molecule 4 Chromosome CM023059.1 = NC_048301.1 Primary Assembly 142343550 na chr5 assembled-molecule 5 Chromosome CM023060.1 = NC_048302.1 Primary Assembly 140411086 na chr6 assembled-molecule 6 Chromosome CM023061.1 = NC_048303.1 Primary Assembly 129675691 na chr7 assembled-molecule 7 Chromosome CM023062.1 = NC_048304.1 Primary Assembly 126808733 na chr8 assembled-molecule 8 Chromosome CM023063.1 = NC_048305.1 Primary Assembly 109307977 na chr9 assembled-molecule 9 Chromosome CM023064.1 = NC_048306.1 Primary Assembly 104972506 na chr10 assembled-molecule 10 Chromosome CM023065.1 = NC_048307.1 Primary Assembly 85829911 na chr11 assembled-molecule 11 Chromosome CM023066.1 = NC_048308.1 Primary Assembly 76047897 na chr12 assembled-molecule 12 Chromosome CM023067.1 = NC_048309.1 Primary Assembly 45061502 na chr13 assembled-molecule 13 Chromosome CM023068.1 = NC_048310.1 Primary Assembly 43716676 na chr14 assembled-molecule 14 Chromosome CM023069.1 = NC_048311.1 Primary Assembly 42221082 na chr15 assembled-molecule 15 Chromosome CM023070.1 = NC_048312.1 Primary Assembly 32210117 na chr16 assembled-molecule 16 Chromosome CM023071.1 = NC_048313.1 Primary Assembly 30045477 na chr17 assembled-molecule 17 Chromosome CM023072.1 = NC_048314.1 Primary Assembly 26830997 na chr18 assembled-molecule 18 Chromosome CM023073.1 = NC_048315.1 Primary Assembly 24772400 na chr19 assembled-molecule 19 Chromosome CM023074.1 = NC_048316.1 Primary Assembly 22813715 na chr20 assembled-molecule 20 Chromosome CM023075.1 = NC_048317.1 Primary Assembly 19368400 na chr21 assembled-molecule 21 Chromosome CM023076.1 = NC_048318.1 Primary Assembly 19049219 na chr22 assembled-molecule 22 Chromosome CM023077.1 = NC_048319.1 Primary Assembly 16439607 na chr23 assembled-molecule 23 Chromosome CM023078.1 = NC_048320.1 Primary Assembly 16074632 na chr24 assembled-molecule 24 Chromosome CM023079.1 = NC_048321.1 Primary Assembly 15148950 na chr25 assembled-molecule 25 Chromosome CM023080.1 = NC_048322.1 Primary Assembly 7130772 na scaffold_26 unplaced-scaffold na na VIRI01000026.1 = NW_023260511.1 Primary Assembly 5535723 na scaffold_28 unplaced-scaffold na na VIRI01000027.1 = NW_023260513.1 Primary Assembly 3292392 na scaffold_30 unplaced-scaffold na na VIRI01000028.1 = NW_023260516.1 Primary Assembly 1077423 na scaffold_31 unplaced-scaffold na na VIRI01000029.1 = NW_023260517.1 Primary Assembly 453502 na scaffold_29 unplaced-scaffold na na VIRI01000030.1 = NW_023260514.1 Primary Assembly 80068 na scaffold_32 unplaced-scaffold na na VIRI01000031.1 = NW_023260518.1 Primary Assembly 132770 na scaffold_33 unplaced-scaffold na na VIRI01000032.1 = NW_023260519.1 Primary Assembly 132713 na scaffold_34 unplaced-scaffold na na VIRI01000033.1 = NW_023260520.1 Primary Assembly 110993 na scaffold_35 unplaced-scaffold na na VIRI01000034.1 = NW_023260521.1 Primary Assembly 98221 na scaffold_36 unplaced-scaffold na na VIRI01000035.1 = NW_023260523.1 Primary Assembly 97782 na scaffold_37 unplaced-scaffold na na VIRI01000036.1 = NW_023260524.1 Primary Assembly 97655 na scaffold_38 unplaced-scaffold na na VIRI01000037.1 = NW_023260525.1 Primary Assembly 93957 na scaffold_39 unplaced-scaffold na na VIRI01000038.1 = NW_023260526.1 Primary Assembly 93007 na scaffold_40 unplaced-scaffold na na VIRI01000039.1 = NW_023260527.1 Primary Assembly 90099 na scaffold_41 unplaced-scaffold na na VIRI01000040.1 = NW_023260528.1 Primary Assembly 89832 na scaffold_42 unplaced-scaffold na na VIRI01000041.1 = NW_023260529.1 Primary Assembly 88688 na scaffold_43 unplaced-scaffold na na VIRI01000042.1 = NW_023260530.1 Primary Assembly 85040 na scaffold_45 unplaced-scaffold na na VIRI01000043.1 = NW_023260531.1 Primary Assembly 84583 na scaffold_46 unplaced-scaffold na na VIRI01000044.1 = NW_023260532.1 Primary Assembly 83591 na scaffold_47 unplaced-scaffold na na VIRI01000045.1 = NW_023260533.1 Primary Assembly 83568 na scaffold_48 unplaced-scaffold na na VIRI01000046.1 = NW_023260534.1 Primary Assembly 83064 na scaffold_49 unplaced-scaffold na na VIRI01000047.1 = NW_023260535.1 Primary Assembly 82500 na scaffold_50 unplaced-scaffold na na VIRI01000048.1 = NW_023260536.1 Primary Assembly 81792 na scaffold_51 unplaced-scaffold na na VIRI01000049.1 = NW_023260537.1 Primary Assembly 79709 na scaffold_52 unplaced-scaffold na na VIRI01000050.1 = NW_023260538.1 Primary Assembly 79613 na scaffold_53 unplaced-scaffold na na VIRI01000051.1 = NW_023260539.1 Primary Assembly 78564 na scaffold_54 unplaced-scaffold na na VIRI01000052.1 = NW_023260540.1 Primary Assembly 77747 na scaffold_55 unplaced-scaffold na na VIRI01000053.1 = NW_023260541.1 Primary Assembly 77741 na scaffold_56 unplaced-scaffold na na VIRI01000054.1 = NW_023260542.1 Primary Assembly 76003 na scaffold_57 unplaced-scaffold na na VIRI01000055.1 = NW_023260543.1 Primary Assembly 75243 na scaffold_58 unplaced-scaffold na na VIRI01000056.1 = NW_023260544.1 Primary Assembly 75046 na scaffold_59 unplaced-scaffold na na VIRI01000057.1 = NW_023260545.1 Primary Assembly 74871 na scaffold_197 unplaced-scaffold na na VIRI01000058.1 = NW_023260509.1 Primary Assembly 74605 na scaffold_60 unplaced-scaffold na na VIRI01000059.1 = NW_023260546.1 Primary Assembly 74561 na scaffold_61 unplaced-scaffold na na VIRI01000060.1 = NW_023260547.1 Primary Assembly 73802 na scaffold_62 unplaced-scaffold na na VIRI01000061.1 = NW_023260548.1 Primary Assembly 73794 na scaffold_63 unplaced-scaffold na na VIRI01000062.1 = NW_023260549.1 Primary Assembly 72938 na scaffold_64 unplaced-scaffold na na VIRI01000063.1 = NW_023260550.1 Primary Assembly 72885 na scaffold_65 unplaced-scaffold na na VIRI01000064.1 = NW_023260551.1 Primary Assembly 71550 na scaffold_66 unplaced-scaffold na na VIRI01000065.1 = NW_023260552.1 Primary Assembly 71540 na scaffold_67 unplaced-scaffold na na VIRI01000066.1 = NW_023260553.1 Primary Assembly 71006 na scaffold_68 unplaced-scaffold na na VIRI01000067.1 = NW_023260554.1 Primary Assembly 70984 na scaffold_69 unplaced-scaffold na na VIRI01000068.1 = NW_023260555.1 Primary Assembly 70945 na scaffold_70 unplaced-scaffold na na VIRI01000069.1 = NW_023260556.1 Primary Assembly 70398 na scaffold_71 unplaced-scaffold na na VIRI01000070.1 = NW_023260557.1 Primary Assembly 70383 na scaffold_72 unplaced-scaffold na na VIRI01000071.1 = NW_023260558.1 Primary Assembly 70240 na scaffold_73 unplaced-scaffold na na VIRI01000072.1 = NW_023260559.1 Primary Assembly 70224 na scaffold_74 unplaced-scaffold na na VIRI01000073.1 = NW_023260560.1 Primary Assembly 69862 na scaffold_100 unplaced-scaffold na na VIRI01000074.1 = NW_023260474.1 Primary Assembly 69699 na scaffold_75 unplaced-scaffold na na VIRI01000075.1 = NW_023260561.1 Primary Assembly 68279 na scaffold_357 unplaced-scaffold na na VIRI01000076.1 = NW_023260522.1 Primary Assembly 67540 na scaffold_76 unplaced-scaffold na na VIRI01000077.1 = NW_023260562.1 Primary Assembly 66553 na scaffold_77 unplaced-scaffold na na VIRI01000078.1 = NW_023260563.1 Primary Assembly 66549 na scaffold_78 unplaced-scaffold na na VIRI01000079.1 = NW_023260564.1 Primary Assembly 66034 na scaffold_80 unplaced-scaffold na na VIRI01000080.1 = NW_023260566.1 Primary Assembly 65523 na scaffold_79 unplaced-scaffold na na VIRI01000081.1 = NW_023260565.1 Primary Assembly 65490 na scaffold_81 unplaced-scaffold na na VIRI01000082.1 = NW_023260567.1 Primary Assembly 64988 na scaffold_82 unplaced-scaffold na na VIRI01000083.1 = NW_023260568.1 Primary Assembly 64898 na scaffold_83 unplaced-scaffold na na VIRI01000084.1 = NW_023260569.1 Primary Assembly 64808 na scaffold_120 unplaced-scaffold na na VIRI01000085.1 = NW_023260493.1 Primary Assembly 64712 na scaffold_84 unplaced-scaffold na na VIRI01000086.1 = NW_023260570.1 Primary Assembly 64534 na scaffold_85 unplaced-scaffold na na VIRI01000087.1 = NW_023260571.1 Primary Assembly 64452 na scaffold_86 unplaced-scaffold na na VIRI01000088.1 = NW_023260572.1 Primary Assembly 63681 na scaffold_87 unplaced-scaffold na na VIRI01000089.1 = NW_023260573.1 Primary Assembly 62580 na scaffold_88 unplaced-scaffold na na VIRI01000090.1 = NW_023260574.1 Primary Assembly 62228 na scaffold_89 unplaced-scaffold na na VIRI01000091.1 = NW_023260575.1 Primary Assembly 62086 na scaffold_90 unplaced-scaffold na na VIRI01000092.1 = NW_023260576.1 Primary Assembly 61990 na scaffold_91 unplaced-scaffold na na VIRI01000093.1 = NW_023260577.1 Primary Assembly 61772 na scaffold_92 unplaced-scaffold na na VIRI01000094.1 = NW_023260578.1 Primary Assembly 61736 na scaffold_93 unplaced-scaffold na na VIRI01000095.1 = NW_023260579.1 Primary Assembly 61316 na scaffold_94 unplaced-scaffold na na VIRI01000096.1 = NW_023260580.1 Primary Assembly 61304 na scaffold_95 unplaced-scaffold na na VIRI01000097.1 = NW_023260581.1 Primary Assembly 61278 na scaffold_96 unplaced-scaffold na na VIRI01000098.1 = NW_023260582.1 Primary Assembly 61275 na scaffold_97 unplaced-scaffold na na VIRI01000099.1 = NW_023260583.1 Primary Assembly 61117 na scaffold_99 unplaced-scaffold na na VIRI01000100.1 = NW_023260585.1 Primary Assembly 60947 na scaffold_98 unplaced-scaffold na na VIRI01000101.1 = NW_023260584.1 Primary Assembly 60702 na scaffold_101 unplaced-scaffold na na VIRI01000102.1 = NW_023260475.1 Primary Assembly 60479 na scaffold_102 unplaced-scaffold na na VIRI01000103.1 = NW_023260476.1 Primary Assembly 60468 na scaffold_103 unplaced-scaffold na na VIRI01000104.1 = NW_023260477.1 Primary Assembly 60405 na scaffold_109 unplaced-scaffold na na VIRI01000105.1 = NW_023260482.1 Primary Assembly 60399 na scaffold_104 unplaced-scaffold na na VIRI01000106.1 = NW_023260478.1 Primary Assembly 60391 na scaffold_105 unplaced-scaffold na na VIRI01000107.1 = NW_023260479.1 Primary Assembly 60185 na scaffold_106 unplaced-scaffold na na VIRI01000108.1 = NW_023260480.1 Primary Assembly 60170 na scaffold_107 unplaced-scaffold na na VIRI01000109.1 = NW_023260481.1 Primary Assembly 60161 na scaffold_110 unplaced-scaffold na na VIRI01000110.1 = NW_023260483.1 Primary Assembly 59901 na scaffold_111 unplaced-scaffold na na VIRI01000111.1 = NW_023260484.1 Primary Assembly 59899 na scaffold_112 unplaced-scaffold na na VIRI01000112.1 = NW_023260485.1 Primary Assembly 59870 na scaffold_113 unplaced-scaffold na na VIRI01000113.1 = NW_023260486.1 Primary Assembly 59864 na scaffold_114 unplaced-scaffold na na VIRI01000114.1 = NW_023260487.1 Primary Assembly 59784 na scaffold_115 unplaced-scaffold na na VIRI01000115.1 = NW_023260488.1 Primary Assembly 59777 na scaffold_117 unplaced-scaffold na na VIRI01000116.1 = NW_023260490.1 Primary Assembly 59769 na scaffold_118 unplaced-scaffold na na VIRI01000117.1 = NW_023260491.1 Primary Assembly 59768 na scaffold_116 unplaced-scaffold na na VIRI01000118.1 = NW_023260489.1 Primary Assembly 59680 na scaffold_119 unplaced-scaffold na na VIRI01000119.1 = NW_023260492.1 Primary Assembly 59580 na scaffold_121 unplaced-scaffold na na VIRI01000120.1 = NW_023260494.1 Primary Assembly 59313 na scaffold_264 unplaced-scaffold na na VIRI01000121.1 = NW_023260512.1 Primary Assembly 58871 na scaffold_122 unplaced-scaffold na na VIRI01000122.1 = NW_023260495.1 Primary Assembly 58308 na scaffold_123 unplaced-scaffold na na VIRI01000123.1 = NW_023260496.1 Primary Assembly 58292 na scaffold_124 unplaced-scaffold na na VIRI01000124.1 = NW_023260497.1 Primary Assembly 58116 na scaffold_125 unplaced-scaffold na na VIRI01000125.1 = NW_023260498.1 Primary Assembly 58086 na scaffold_127 unplaced-scaffold na na VIRI01000126.1 = NW_023260500.1 Primary Assembly 58015 na scaffold_126 unplaced-scaffold na na VIRI01000127.1 = NW_023260499.1 Primary Assembly 57906 na scaffold_297 unplaced-scaffold na na VIRI01000128.1 = NW_023260515.1 Primary Assembly 57704 na scaffold_128 unplaced-scaffold na na VIRI01000129.1 = NW_023260501.1 Primary Assembly 57650 na scaffold_129 unplaced-scaffold na na VIRI01000130.1 = NW_023260502.1 Primary Assembly 57647 na scaffold_130 unplaced-scaffold na na VIRI01000131.1 = NW_023260503.1 Primary Assembly 57571 na scaffold_131 unplaced-scaffold na na VIRI01000132.1 = NW_023260504.1 Primary Assembly 57530 na scaffold_211 unplaced-scaffold na na VIRI01000133.1 = NW_023260510.1 Primary Assembly 57500 na scaffold_136 unplaced-scaffold na na VIRI01000134.1 = NW_023260507.1 Primary Assembly 57336 na scaffold_133 unplaced-scaffold na na VIRI01000135.1 = NW_023260505.1 Primary Assembly 57180 na scaffold_135 unplaced-scaffold na na VIRI01000136.1 = NW_023260506.1 Primary Assembly 57119 na scaffold_137 unplaced-scaffold na na VIRI01000137.1 = NW_023260508.1 Primary Assembly 56865 na MT assembled-molecule MT Mitochondrion na <> NC_011573.1 non-nuclear 16810 na