# Assembly name: mRouAeg1.p # Organism name: Rousettus aegyptiacus (Egyptian rousette) # Isolate: mRouAeg1 # Sex: male # Taxid: 9407 # BioSample: SAMN14734550 # BioProject: PRJNA628585 # Submitter: Bat1K # Date: 2020-08-07 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JACASE01 # Assembly method: DAmar v. APRIL-2019; Bionano Solve DLS v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 # Expected final version: no # Genome coverage: 64.6x # Sequencing technology: PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Arima Genomics Hi-C kit; PacBio Sequel IsoSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_014176215.1 # RefSeq assembly accession: GCF_014176215.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_014176225.1 GCF_014176225.1 Primary Assembly ## GCA_014176235.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_m13_p_1 unplaced-scaffold na na JACASE010000001.1 = NW_023416284.1 Primary Assembly 185846147 na scaffold_m13_p_2 unplaced-scaffold na na JACASE010000002.1 = NW_023416295.1 Primary Assembly 177604325 na scaffold_m13_p_3 unplaced-scaffold na na JACASE010000003.1 = NW_023416306.1 Primary Assembly 173785432 na scaffold_m13_p_4 unplaced-scaffold na na JACASE010000004.1 = NW_023416307.1 Primary Assembly 160593437 na scaffold_m13_p_5 unplaced-scaffold na na JACASE010000005.1 = NW_023416308.1 Primary Assembly 121834110 na scaffold_m13_p_6 unplaced-scaffold na na JACASE010000006.1 = NW_023416309.1 Primary Assembly 115500677 na scaffold_m13_p_7 unplaced-scaffold na na JACASE010000007.1 = NW_023416310.1 Primary Assembly 113811795 na scaffold_m13_p_8 unplaced-scaffold na na JACASE010000008.1 = NW_023416311.1 Primary Assembly 112742020 na scaffold_m13_p_9 unplaced-scaffold na na JACASE010000009.1 = NW_023416312.1 Primary Assembly 106502882 na scaffold_m13_p_10 unplaced-scaffold na na JACASE010000010.1 = NW_023416285.1 Primary Assembly 99627929 na scaffold_m13_p_11 unplaced-scaffold na na JACASE010000011.1 = NW_023416286.1 Primary Assembly 95986979 na scaffold_m13_p_12 unplaced-scaffold na na JACASE010000012.1 = NW_023416287.1 Primary Assembly 94233832 na scaffold_m13_p_13 unplaced-scaffold na na JACASE010000013.1 = NW_023416288.1 Primary Assembly 80831791 na scaffold_m13_p_14 unplaced-scaffold na na JACASE010000014.1 = NW_023416289.1 Primary Assembly 61848409 na scaffold_m13_p_15 unplaced-scaffold na na JACASE010000015.1 = NW_023416290.1 Primary Assembly 60676320 na scaffold_m13_p_16 unplaced-scaffold na na JACASE010000016.1 = NW_023416291.1 Primary Assembly 54924399 na scaffold_m13_p_17 unplaced-scaffold na na JACASE010000017.1 = NW_023416292.1 Primary Assembly 46074814 na scaffold_m13_p_18 unplaced-scaffold na na JACASE010000018.1 = NW_023416293.1 Primary Assembly 22302598 na scaffold_m13_p_19 unplaced-scaffold na na JACASE010000019.1 = NW_023416294.1 Primary Assembly 5968580 na scaffold_m13_p_20 unplaced-scaffold na na JACASE010000020.1 = NW_023416296.1 Primary Assembly 1820746 na scaffold_m13_p_21 unplaced-scaffold na na JACASE010000021.1 = NW_023416297.1 Primary Assembly 329507 na scaffold_m13_p_22 unplaced-scaffold na na JACASE010000022.1 = NW_023416298.1 Primary Assembly 266358 na scaffold_m13_p_23 unplaced-scaffold na na JACASE010000023.1 = NW_023416299.1 Primary Assembly 143099 na scaffold_m13_p_24 unplaced-scaffold na na JACASE010000024.1 = NW_023416300.1 Primary Assembly 102411 na scaffold_m13_p_25 unplaced-scaffold na na JACASE010000025.1 = NW_023416301.1 Primary Assembly 68918 na scaffold_m13_p_26 unplaced-scaffold na na JACASE010000026.1 = NW_023416302.1 Primary Assembly 68636 na scaffold_m13_p_27 unplaced-scaffold na na JACASE010000027.1 = NW_023416303.1 Primary Assembly 48257 na scaffold_m13_p_28 unplaced-scaffold na na JACASE010000028.1 = NW_023416304.1 Primary Assembly 32771 na scaffold_m13_p_29 unplaced-scaffold na na JACASE010000029.1 = NW_023416305.1 Primary Assembly 24893 na MT assembled-molecule MT Mitochondrion CM024382.1 <> na non-nuclear 16645 na