# Assembly name: mChoDid1.pri # Organism name: Choloepus didactylus (southern two-toed sloth) # Isolate: mChoDid1 # Sex: male # Taxid: 27675 # BioSample: SAMN12612024 # BioProject: PRJNA561937 # Submitter: Vertebrate Genomes Project # Date: 2020-11-03 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADCNF01 # Assembly method: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups github v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-14; VGP assembly pipeline v. 1.6 # Expected final version: no # Genome coverage: 56.84x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_015220235.1 # RefSeq assembly accession: GCF_015220235.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_015220265.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015220245.1 GCF_015220245.1 Primary Assembly ## GCA_015220255.1 GCF_015505925.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM026690.1 = NC_051307.1 Primary Assembly 250664781 na SUPER_2 assembled-molecule 2 Chromosome CM026691.1 = NC_051308.1 Primary Assembly 248084734 na SUPER_3 assembled-molecule 3 Chromosome CM026692.1 = NC_051309.1 Primary Assembly 223233325 na SUPER_4 assembled-molecule 4 Chromosome CM026693.1 = NC_051310.1 Primary Assembly 196373313 na SUPER_5 assembled-molecule 5 Chromosome CM026694.1 = NC_051311.1 Primary Assembly 168700187 na SUPER_6 assembled-molecule 6 Chromosome CM026695.1 = NC_051312.1 Primary Assembly 156663619 na SUPER_7 assembled-molecule 7 Chromosome CM026696.1 = NC_051313.1 Primary Assembly 156022981 na SUPER_8 assembled-molecule 8 Chromosome CM026697.1 = NC_051314.1 Primary Assembly 146178362 na SUPER_9 assembled-molecule 9 Chromosome CM026698.1 = NC_051315.1 Primary Assembly 135328281 na SUPER_10 assembled-molecule 10 Chromosome CM026699.1 = NC_051316.1 Primary Assembly 132469143 na SUPER_11 assembled-molecule 11 Chromosome CM026700.1 = NC_051317.1 Primary Assembly 90811022 na SUPER_12 assembled-molecule 12 Chromosome CM026701.1 = NC_051318.1 Primary Assembly 102976318 na SUPER_13 assembled-molecule 13 Chromosome CM026702.1 = NC_051319.1 Primary Assembly 100229138 na SUPER_14 assembled-molecule 14 Chromosome CM026703.1 = NC_051320.1 Primary Assembly 100080887 na SUPER_15 assembled-molecule 15 Chromosome CM026704.1 = NC_051321.1 Primary Assembly 89644403 na SUPER_16 assembled-molecule 16 Chromosome CM026705.1 = NC_051322.1 Primary Assembly 86887137 na SUPER_17 assembled-molecule 17 Chromosome CM026706.1 = NC_051323.1 Primary Assembly 78810110 na SUPER_18 assembled-molecule 18 Chromosome CM026707.1 = NC_051324.1 Primary Assembly 77031504 na SUPER_19 assembled-molecule 19 Chromosome CM026708.1 = NC_051325.1 Primary Assembly 66415491 na SUPER_20 assembled-molecule 20 Chromosome CM026709.1 = NC_051326.1 Primary Assembly 64556003 na SUPER_21 assembled-molecule 21 Chromosome CM026710.1 = NC_051327.1 Primary Assembly 53136999 na SUPER_22 assembled-molecule 22 Chromosome CM026711.1 = NC_051328.1 Primary Assembly 44682675 na SUPER_23 assembled-molecule 23 Chromosome CM026712.1 = NC_051329.1 Primary Assembly 32044896 na SUPER_24 assembled-molecule 24 Chromosome CM026713.1 = NC_051330.1 Primary Assembly 25766288 na SUPER_25 assembled-molecule 25 Chromosome CM026714.1 = NC_051331.1 Primary Assembly 10490878 na SUPER_26 assembled-molecule 26 Chromosome CM026715.1 = NC_051332.1 Primary Assembly 17351548 na SUPER_27 assembled-molecule 27 Chromosome CM026716.1 = NC_051333.1 Primary Assembly 26625015 na SUPER_X assembled-molecule X Chromosome CM026717.1 = NC_051334.1 Primary Assembly 193839925 na SUPER_Y assembled-molecule Y Chromosome CM026718.1 = NC_051335.1 Primary Assembly 55058534 na SUPER_5_unloc1 unlocalized-scaffold 5 Chromosome JADCNF010000006.1 = NW_023637573.1 Primary Assembly 800127 na SUPER_5_unloc2 unlocalized-scaffold 5 Chromosome JADCNF010000007.1 = NW_023637574.1 Primary Assembly 432184 na SUPER_5_unloc3 unlocalized-scaffold 5 Chromosome JADCNF010000008.1 = NW_023637575.1 Primary Assembly 400629 na SUPER_8_unloc1 unlocalized-scaffold 8 Chromosome JADCNF010000012.1 = NW_023637576.1 Primary Assembly 48891 na SUPER_11_unloc1 unlocalized-scaffold 11 Chromosome JADCNF010000018.1 = NW_023637577.1 Primary Assembly 5475474 na SUPER_11_unloc2 unlocalized-scaffold 11 Chromosome JADCNF010000019.1 = NW_023637579.1 Primary Assembly 5293750 na SUPER_11_unloc3 unlocalized-scaffold 11 Chromosome JADCNF010000020.1 = NW_023637580.1 Primary Assembly 3552071 na SUPER_11_unloc4 unlocalized-scaffold 11 Chromosome JADCNF010000021.1 = NW_023637581.1 Primary Assembly 2744250 na SUPER_11_unloc5 unlocalized-scaffold 11 Chromosome JADCNF010000022.1 = NW_023637582.1 Primary Assembly 806751 na SUPER_11_unloc6 unlocalized-scaffold 11 Chromosome JADCNF010000023.1 = NW_023637583.1 Primary Assembly 747953 na SUPER_11_unloc7 unlocalized-scaffold 11 Chromosome JADCNF010000024.1 = NW_023637584.1 Primary Assembly 298705 na SUPER_11_unloc8 unlocalized-scaffold 11 Chromosome JADCNF010000025.1 = NW_023637585.1 Primary Assembly 167308 na SUPER_11_unloc9 unlocalized-scaffold 11 Chromosome JADCNF010000026.1 = NW_023637586.1 Primary Assembly 105043 na SUPER_11_unloc10 unlocalized-scaffold 11 Chromosome JADCNF010000027.1 = NW_023637578.1 Primary Assembly 95134 na SUPER_12_unloc1 unlocalized-scaffold 12 Chromosome JADCNF010000029.1 = NW_023637587.1 Primary Assembly 299284 na SUPER_13_unloc1 unlocalized-scaffold 13 Chromosome JADCNF010000016.1 = NW_023637588.1 Primary Assembly 2170093 na SUPER_13_unloc2 unlocalized-scaffold 13 Chromosome JADCNF010000145.1 = NW_023637589.1 Primary Assembly 67467 na SUPER_23_unloc1 unlocalized-scaffold 23 Chromosome JADCNF010000040.1 = NW_023637590.1 Primary Assembly 4056676 na SUPER_23_unloc2 unlocalized-scaffold 23 Chromosome JADCNF010000041.1 = NW_023637596.1 Primary Assembly 1243349 na SUPER_23_unloc3 unlocalized-scaffold 23 Chromosome JADCNF010000042.1 = NW_023637597.1 Primary Assembly 1083205 na SUPER_23_unloc4 unlocalized-scaffold 23 Chromosome JADCNF010000043.1 = NW_023637598.1 Primary Assembly 655271 na SUPER_23_unloc5 unlocalized-scaffold 23 Chromosome JADCNF010000044.1 = NW_023637599.1 Primary Assembly 454956 na SUPER_23_unloc6 unlocalized-scaffold 23 Chromosome JADCNF010000045.1 = NW_023637600.1 Primary Assembly 539168 na SUPER_23_unloc7 unlocalized-scaffold 23 Chromosome JADCNF010000046.1 = NW_023637601.1 Primary Assembly 525547 na SUPER_23_unloc8 unlocalized-scaffold 23 Chromosome JADCNF010000047.1 = NW_023637602.1 Primary Assembly 522814 na SUPER_23_unloc9 unlocalized-scaffold 23 Chromosome JADCNF010000048.1 = NW_023637603.1 Primary Assembly 505270 na SUPER_23_unloc10 unlocalized-scaffold 23 Chromosome JADCNF010000049.1 = NW_023637591.1 Primary Assembly 472200 na SUPER_23_unloc11 unlocalized-scaffold 23 Chromosome JADCNF010000050.1 = NW_023637592.1 Primary Assembly 220953 na SUPER_23_unloc12 unlocalized-scaffold 23 Chromosome JADCNF010000051.1 = NW_023637593.1 Primary Assembly 204724 na SUPER_23_unloc13 unlocalized-scaffold 23 Chromosome JADCNF010000052.1 = NW_023637594.1 Primary Assembly 175958 na SUPER_23_unloc14 unlocalized-scaffold 23 Chromosome JADCNF010000053.1 = NW_023637595.1 Primary Assembly 174891 na SUPER_24_unloc1 unlocalized-scaffold 24 Chromosome JADCNF010000055.1 = NW_023637604.1 Primary Assembly 2347058 na SUPER_24_unloc2 unlocalized-scaffold 24 Chromosome JADCNF010000056.1 = NW_023637605.1 Primary Assembly 2157328 na SUPER_25_unloc1 unlocalized-scaffold 25 Chromosome JADCNF010000058.1 = NW_023637606.1 Primary Assembly 8506328 na SUPER_25_unloc2 unlocalized-scaffold 25 Chromosome JADCNF010000059.1 = NW_023637607.1 Primary Assembly 7803001 na SUPER_25_unloc3 unlocalized-scaffold 25 Chromosome JADCNF010000060.1 = NW_023637608.1 Primary Assembly 538600 na SUPER_25_unloc4 unlocalized-scaffold 25 Chromosome JADCNF010000061.1 = NW_023637609.1 Primary Assembly 314973 na SUPER_25_unloc5 unlocalized-scaffold 25 Chromosome JADCNF010000062.1 = NW_023637610.1 Primary Assembly 395942 na SUPER_25_unloc6 unlocalized-scaffold 25 Chromosome JADCNF010000063.1 = NW_023637611.1 Primary Assembly 174309 na SUPER_25_unloc7 unlocalized-scaffold 25 Chromosome JADCNF010000064.1 = NW_023637612.1 Primary Assembly 70119 na SUPER_25_unloc8 unlocalized-scaffold 25 Chromosome JADCNF010000065.1 = NW_023637613.1 Primary Assembly 40955 na SUPER_26_unloc1 unlocalized-scaffold 26 Chromosome JADCNF010000067.1 = NW_023637614.1 Primary Assembly 4142306 na SUPER_26_unloc2 unlocalized-scaffold 26 Chromosome JADCNF010000068.1 = NW_023637615.1 Primary Assembly 3641002 na SUPER_26_unloc3 unlocalized-scaffold 26 Chromosome JADCNF010000069.1 = NW_023637616.1 Primary Assembly 553756 na SUPER_26_unloc4 unlocalized-scaffold 26 Chromosome JADCNF010000070.1 = NW_023637617.1 Primary Assembly 332597 na SUPER_26_unloc5 unlocalized-scaffold 26 Chromosome JADCNF010000071.1 = NW_023637618.1 Primary Assembly 258898 na SUPER_26_unloc6 unlocalized-scaffold 26 Chromosome JADCNF010000072.1 = NW_023637619.1 Primary Assembly 55197 na SUPER_26_unloc7 unlocalized-scaffold 26 Chromosome JADCNF010000073.1 = NW_023637620.1 Primary Assembly 29951 na SUPER_X_unloc1 unlocalized-scaffold X Chromosome JADCNF010000076.1 = NW_023637621.1 Primary Assembly 3090292 na SUPER_X_unloc2 unlocalized-scaffold X Chromosome JADCNF010000077.1 = NW_023637622.1 Primary Assembly 1127822 na SUPER_X_unloc3 unlocalized-scaffold X Chromosome JADCNF010000078.1 = NW_023637623.1 Primary Assembly 1121930 na SUPER_Y_unloc1 unlocalized-scaffold Y Chromosome JADCNF010000080.1 = NW_023637624.1 Primary Assembly 7594001 na SUPER_Y_unloc2 unlocalized-scaffold Y Chromosome JADCNF010000081.1 = NW_023637625.1 Primary Assembly 2071512 na SUPER_Y_unloc3 unlocalized-scaffold Y Chromosome JADCNF010000082.1 = NW_023637626.1 Primary Assembly 1104806 na SUPER_Y_unloc5 unlocalized-scaffold Y Chromosome JADCNF010000083.1 = NW_023637627.1 Primary Assembly 465551 na SUPER_Y_unloc6 unlocalized-scaffold Y Chromosome JADCNF010000084.1 = NW_023637628.1 Primary Assembly 333219 na SUPER_Y_unloc7 unlocalized-scaffold Y Chromosome JADCNF010000085.1 = NW_023637629.1 Primary Assembly 123904 na SUPER_Y_unloc8 unlocalized-scaffold Y Chromosome JADCNF010000086.1 = NW_023637630.1 Primary Assembly 53692 na zz_scaffold_11_ctg1 unplaced-scaffold na na JADCNF010000087.1 = NW_023637631.1 Primary Assembly 102024 na zz_scaffold_32_ctg1 unplaced-scaffold na na JADCNF010000088.1 = NW_023637687.1 Primary Assembly 46853 na zz_scaffold_40_ctg1 unplaced-scaffold na na JADCNF010000089.1 = NW_023637688.1 Primary Assembly 77314 na zz_scaffold_154_ctg1 unplaced-scaffold na na JADCNF010000090.1 = NW_023637632.1 Primary Assembly 91434 na zz_scaffold_157_ctg1 unplaced-scaffold na na JADCNF010000091.1 = NW_023637633.1 Primary Assembly 42114 na zz_scaffold_161_ctg1 unplaced-scaffold na na JADCNF010000092.1 = NW_023637634.1 Primary Assembly 80799 na zz_scaffold_164_ctg1 unplaced-scaffold na na JADCNF010000093.1 = NW_023637635.1 Primary Assembly 70098 na zz_scaffold_166_ctg1 unplaced-scaffold na na JADCNF010000094.1 = NW_023637636.1 Primary Assembly 64204 na zz_scaffold_168_ctg1 unplaced-scaffold na na JADCNF010000095.1 = NW_023637637.1 Primary Assembly 61550 na zz_scaffold_177_ctg1 unplaced-scaffold na na JADCNF010000096.1 = NW_023637638.1 Primary Assembly 55156 na zz_scaffold_179_ctg1 unplaced-scaffold na na JADCNF010000097.1 = NW_023637639.1 Primary Assembly 53986 na zz_scaffold_187_ctg1 unplaced-scaffold na na JADCNF010000098.1 = NW_023637640.1 Primary Assembly 49794 na zz_scaffold_189_ctg1 unplaced-scaffold na na JADCNF010000099.1 = NW_023637641.1 Primary Assembly 50041 na zz_scaffold_191_ctg1 unplaced-scaffold na na JADCNF010000100.1 = NW_023637642.1 Primary Assembly 48828 na zz_scaffold_198_ctg1 unplaced-scaffold na na JADCNF010000101.1 = NW_023637643.1 Primary Assembly 43748 na zz_scaffold_200_ctg1 unplaced-scaffold na na JADCNF010000102.1 = NW_023637644.1 Primary Assembly 42635 na zz_scaffold_204_ctg1 unplaced-scaffold na na JADCNF010000103.1 = NW_023637645.1 Primary Assembly 40142 na zz_scaffold_211_ctg1 unplaced-scaffold na na JADCNF010000104.1 = NW_023637646.1 Primary Assembly 35814 na zz_scaffold_212_ctg1 unplaced-scaffold na na JADCNF010000105.1 = NW_023637647.1 Primary Assembly 35893 na zz_scaffold_213_ctg1 unplaced-scaffold na na JADCNF010000106.1 = NW_023637648.1 Primary Assembly 35571 na zz_scaffold_214_ctg1 unplaced-scaffold na na JADCNF010000107.1 = NW_023637649.1 Primary Assembly 35230 na zz_scaffold_216_ctg1 unplaced-scaffold na na JADCNF010000108.1 = NW_023637650.1 Primary Assembly 34550 na zz_scaffold_217_ctg1 unplaced-scaffold na na JADCNF010000109.1 = NW_023637651.1 Primary Assembly 33442 na zz_scaffold_223_ctg1 unplaced-scaffold na na JADCNF010000110.1 = NW_023637652.1 Primary Assembly 31031 na zz_scaffold_227_ctg1 unplaced-scaffold na na JADCNF010000111.1 = NW_023637653.1 Primary Assembly 30364 na zz_scaffold_232_ctg1 unplaced-scaffold na na JADCNF010000112.1 = NW_023637654.1 Primary Assembly 28348 na zz_scaffold_235_ctg1 unplaced-scaffold na na JADCNF010000113.1 = NW_023637655.1 Primary Assembly 27437 na zz_scaffold_239_ctg1 unplaced-scaffold na na JADCNF010000114.1 = NW_023637656.1 Primary Assembly 24246 na zz_scaffold_243_ctg1 unplaced-scaffold na na JADCNF010000115.1 = NW_023637657.1 Primary Assembly 22406 na zz_scaffold_246_ctg1 unplaced-scaffold na na JADCNF010000116.1 = NW_023637658.1 Primary Assembly 21464 na zz_scaffold_249_ctg1 unplaced-scaffold na na JADCNF010000117.1 = NW_023637659.1 Primary Assembly 21003 na zz_scaffold_253_ctg1 unplaced-scaffold na na JADCNF010000118.1 = NW_023637660.1 Primary Assembly 20270 na zz_scaffold_255_ctg1 unplaced-scaffold na na JADCNF010000119.1 = NW_023637661.1 Primary Assembly 19141 na zz_scaffold_256_ctg1 unplaced-scaffold na na JADCNF010000120.1 = NW_023637662.1 Primary Assembly 18059 na zz_scaffold_257_ctg1 unplaced-scaffold na na JADCNF010000121.1 = NW_023637663.1 Primary Assembly 17587 na zz_scaffold_258_ctg1 unplaced-scaffold na na JADCNF010000122.1 = NW_023637664.1 Primary Assembly 16863 na zz_scaffold_259_ctg1 unplaced-scaffold na na JADCNF010000123.1 = NW_023637665.1 Primary Assembly 16768 na zz_scaffold_260_ctg1 unplaced-scaffold na na JADCNF010000124.1 = NW_023637666.1 Primary Assembly 15524 na zz_scaffold_261_ctg1 unplaced-scaffold na na JADCNF010000125.1 = NW_023637667.1 Primary Assembly 15481 na zz_scaffold_262_ctg1 unplaced-scaffold na na JADCNF010000126.1 = NW_023637668.1 Primary Assembly 15084 na zz_scaffold_263_ctg1 unplaced-scaffold na na JADCNF010000127.1 = NW_023637669.1 Primary Assembly 14884 na zz_scaffold_264_ctg1 unplaced-scaffold na na JADCNF010000128.1 = NW_023637670.1 Primary Assembly 14182 na zz_scaffold_265_ctg1 unplaced-scaffold na na JADCNF010000129.1 = NW_023637671.1 Primary Assembly 13896 na zz_scaffold_266_ctg1 unplaced-scaffold na na JADCNF010000130.1 = NW_023637672.1 Primary Assembly 13317 na zz_scaffold_268_ctg1 unplaced-scaffold na na JADCNF010000131.1 = NW_023637673.1 Primary Assembly 11580 na zz_scaffold_269_ctg1 unplaced-scaffold na na JADCNF010000132.1 = NW_023637674.1 Primary Assembly 11158 na zz_scaffold_270_ctg1 unplaced-scaffold na na JADCNF010000133.1 = NW_023637675.1 Primary Assembly 10418 na zz_scaffold_271_ctg1 unplaced-scaffold na na JADCNF010000134.1 = NW_023637676.1 Primary Assembly 9683 na zz_scaffold_272_ctg1 unplaced-scaffold na na JADCNF010000135.1 = NW_023637677.1 Primary Assembly 8830 na zz_scaffold_273_ctg1 unplaced-scaffold na na JADCNF010000136.1 = NW_023637678.1 Primary Assembly 7918 na zz_scaffold_274_ctg1 unplaced-scaffold na na JADCNF010000137.1 = NW_023637679.1 Primary Assembly 5841 na zz_scaffold_275_ctg1 unplaced-scaffold na na JADCNF010000138.1 = NW_023637680.1 Primary Assembly 4821 na zz_scaffold_276_ctg1 unplaced-scaffold na na JADCNF010000139.1 = NW_023637681.1 Primary Assembly 4503 na zz_scaffold_277_ctg1 unplaced-scaffold na na JADCNF010000140.1 = NW_023637682.1 Primary Assembly 4285 na zz_scaffold_278_ctg1 unplaced-scaffold na na JADCNF010000141.1 = NW_023637683.1 Primary Assembly 4242 na zz_scaffold_279_ctg1 unplaced-scaffold na na JADCNF010000142.1 = NW_023637684.1 Primary Assembly 3326 na zz_scaffold_280_ctg1 unplaced-scaffold na na JADCNF010000143.1 = NW_023637685.1 Primary Assembly 2258 na zz_scaffold_281_ctg1 unplaced-scaffold na na JADCNF010000144.1 = NW_023637686.1 Primary Assembly 2025 na MT assembled-molecule MT Mitochondrion na <> NC_006924.1 non-nuclear 16543 na mChoDid1_MT assembled-molecule MT Mitochondrion CM026720.1 <> na non-nuclear 16499 na