# Assembly name: fPygNat1.pri # Organism name: Pygocentrus nattereri (red-bellied piranha) # Isolate: fPygNat1 # Sex: male # Taxid: 42514 # BioSample: SAMN12623623 # BioProject: PRJNA561975 # Submitter: Vertebrate Genomes Project # Date: 2020-11-03 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADFAU01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-13; VGP assembly pipeline individual v. 1.6 # Expected final version: no # Genome coverage: 77.77x # Sequencing technology: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_015220715.1 # RefSeq assembly accession: GCF_015220715.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_015220065.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015220725.1 GCF_015220725.1 Primary Assembly ## GCA_015220735.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM026721.1 = NC_051211.1 Primary Assembly 57280940 na SUPER_2 assembled-molecule 2 Chromosome CM026722.1 = NC_051212.1 Primary Assembly 56818618 na SUPER_3 assembled-molecule 3 Chromosome CM026723.1 = NC_051213.1 Primary Assembly 51765735 na SUPER_4 assembled-molecule 4 Chromosome CM026724.1 = NC_051214.1 Primary Assembly 51691046 na SUPER_5 assembled-molecule 5 Chromosome CM026725.1 = NC_051215.1 Primary Assembly 51321326 na SUPER_6 assembled-molecule 6 Chromosome CM026726.1 = NC_051216.1 Primary Assembly 49156659 na SUPER_7 assembled-molecule 7 Chromosome CM026727.1 = NC_051217.1 Primary Assembly 47608937 na SUPER_8 assembled-molecule 8 Chromosome CM026728.1 = NC_051218.1 Primary Assembly 47070931 na SUPER_9 assembled-molecule 9 Chromosome CM026729.1 = NC_051219.1 Primary Assembly 46700326 na SUPER_10 assembled-molecule 10 Chromosome CM026730.1 = NC_051220.1 Primary Assembly 44857604 na SUPER_11 assembled-molecule 11 Chromosome CM026731.1 = NC_051221.1 Primary Assembly 43612539 na SUPER_12 assembled-molecule 12 Chromosome CM026732.1 = NC_051222.1 Primary Assembly 42961473 na SUPER_13 assembled-molecule 13 Chromosome CM026733.1 = NC_051223.1 Primary Assembly 42283192 na SUPER_14 assembled-molecule 14 Chromosome CM026734.1 = NC_051224.1 Primary Assembly 42146199 na SUPER_15 assembled-molecule 15 Chromosome CM026735.1 = NC_051225.1 Primary Assembly 41497722 na SUPER_16 assembled-molecule 16 Chromosome CM026736.1 = NC_051226.1 Primary Assembly 41497524 na SUPER_17 assembled-molecule 17 Chromosome CM026737.1 = NC_051227.1 Primary Assembly 41076313 na SUPER_18 assembled-molecule 18 Chromosome CM026738.1 = NC_051228.1 Primary Assembly 40309719 na SUPER_19 assembled-molecule 19 Chromosome CM026739.1 = NC_051229.1 Primary Assembly 39896561 na SUPER_20 assembled-molecule 20 Chromosome CM026740.1 = NC_051230.1 Primary Assembly 37625438 na SUPER_21 assembled-molecule 21 Chromosome CM026741.1 = NC_051231.1 Primary Assembly 36030890 na SUPER_22 assembled-molecule 22 Chromosome CM026742.1 = NC_051232.1 Primary Assembly 34864201 na SUPER_23 assembled-molecule 23 Chromosome CM026743.1 = NC_051233.1 Primary Assembly 34785372 na SUPER_24 assembled-molecule 24 Chromosome CM026744.1 = NC_051234.1 Primary Assembly 34438016 na SUPER_25 assembled-molecule 25 Chromosome CM026745.1 = NC_051235.1 Primary Assembly 34223065 na SUPER_26 assembled-molecule 26 Chromosome CM026746.1 = NC_051236.1 Primary Assembly 31727646 na SUPER_27 assembled-molecule 27 Chromosome CM026747.1 = NC_051237.1 Primary Assembly 28838170 na SUPER_28 assembled-molecule 28 Chromosome CM026748.1 = NC_051238.1 Primary Assembly 27244250 na SUPER_29 assembled-molecule 29 Chromosome CM026749.1 = NC_051239.1 Primary Assembly 21576741 na SUPER_30 assembled-molecule 30 Chromosome CM026750.1 = NC_051240.1 Primary Assembly 20276987 na scaffold_74_arrow_ctg1 unplaced-scaffold na na JADFAU010000031.1 = NW_023618305.1 Primary Assembly 279593 na scaffold_100_arrow_ctg1 unplaced-scaffold na na JADFAU010000032.1 = NW_023618283.1 Primary Assembly 49618 na scaffold_102_arrow_ctg1 unplaced-scaffold na na JADFAU010000033.1 = NW_023618284.1 Primary Assembly 46598 na scaffold_103_arrow_ctg1 unplaced-scaffold na na JADFAU010000034.1 = NW_023618285.1 Primary Assembly 46222 na scaffold_106_arrow_ctg1 unplaced-scaffold na na JADFAU010000035.1 = NW_023618286.1 Primary Assembly 41972 na scaffold_113_arrow_ctg1 unplaced-scaffold na na JADFAU010000036.1 = NW_023618287.1 Primary Assembly 37212 na scaffold_120_arrow_ctg1 unplaced-scaffold na na JADFAU010000037.1 = NW_023618288.1 Primary Assembly 32114 na scaffold_123_arrow_ctg1 unplaced-scaffold na na JADFAU010000038.1 = NW_023618289.1 Primary Assembly 25872 na scaffold_126_arrow_ctg1 unplaced-scaffold na na JADFAU010000039.1 = NW_023618290.1 Primary Assembly 23880 na scaffold_127_arrow_ctg1 unplaced-scaffold na na JADFAU010000040.1 = NW_023618291.1 Primary Assembly 22308 na scaffold_129_arrow_ctg1 unplaced-scaffold na na JADFAU010000041.1 = NW_023618292.1 Primary Assembly 21692 na scaffold_130_arrow_ctg1 unplaced-scaffold na na JADFAU010000042.1 = NW_023618293.1 Primary Assembly 21247 na scaffold_132_arrow_ctg1 unplaced-scaffold na na JADFAU010000043.1 = NW_023618294.1 Primary Assembly 18376 na scaffold_133_arrow_ctg1 unplaced-scaffold na na JADFAU010000044.1 = NW_023618295.1 Primary Assembly 17779 na scaffold_134_arrow_ctg1 unplaced-scaffold na na JADFAU010000045.1 = NW_023618296.1 Primary Assembly 16935 na scaffold_135_arrow_ctg1 unplaced-scaffold na na JADFAU010000046.1 = NW_023618297.1 Primary Assembly 12883 na scaffold_136_arrow_ctg1 unplaced-scaffold na na JADFAU010000047.1 = NW_023618298.1 Primary Assembly 11821 na scaffold_137_arrow_ctg1 unplaced-scaffold na na JADFAU010000048.1 = NW_023618299.1 Primary Assembly 9449 na scaffold_138_arrow_ctg1 unplaced-scaffold na na JADFAU010000049.1 = NW_023618300.1 Primary Assembly 7438 na scaffold_139_arrow_ctg1 unplaced-scaffold na na JADFAU010000050.1 = NW_023618301.1 Primary Assembly 6663 na scaffold_140_arrow_ctg1 unplaced-scaffold na na JADFAU010000051.1 = NW_023618302.1 Primary Assembly 2369 na scaffold_141_arrow_ctg1 unplaced-scaffold na na JADFAU010000052.1 = NW_023618303.1 Primary Assembly 2019 na scaffold_142_arrow_ctg1 unplaced-scaffold na na JADFAU010000053.1 = NW_023618304.1 Primary Assembly 2017 na scaffold_94_arrow_ctg1 unplaced-scaffold na na JADFAU010000054.1 = NW_023618306.1 Primary Assembly 61369 na scaffold_99_arrow_ctg1 unplaced-scaffold na na JADFAU010000055.1 = NW_023618307.1 Primary Assembly 48863 na fPygNat1_MT assembled-molecule MT Mitochondrion CM026751.1 <> na non-nuclear 16708 na