# Assembly name: fSebUmb1.pri # Organism name: Sebastes umbrosus (honeycomb rockfish) # Isolate: fSebUmb1 # Sex: male # Taxid: 72105 # BioSample: SAMN12629503 # BioProject: PRJNA562005 # Submitter: Vertebrate Genomes Project # Date: 2020-11-03 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADCQQ01 # Assembly method: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x x v. 3.2.1_04122018; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-07; VGP assembly pipeline v. 1.6 # Expected final version: no # Genome coverage: 45.05x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Reference Genome # GenBank assembly accession: GCA_015220745.1 # RefSeq assembly accession: GCF_015220745.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_015220095.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015220755.1 GCF_015220755.1 Primary Assembly ## GCA_015220765.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM026752.1 = NC_051269.1 Primary Assembly 44063945 na SUPER_2 assembled-molecule 2 Chromosome CM026753.1 = NC_051270.1 Primary Assembly 41642849 na SUPER_3 assembled-molecule 3 Chromosome CM026754.1 = NC_051271.1 Primary Assembly 41172918 na SUPER_4 assembled-molecule 4 Chromosome CM026755.1 = NC_051272.1 Primary Assembly 39310580 na SUPER_5 assembled-molecule 5 Chromosome CM026756.1 = NC_051273.1 Primary Assembly 38607003 na SUPER_6 assembled-molecule 6 Chromosome CM026757.1 = NC_051274.1 Primary Assembly 36325703 na SUPER_7 assembled-molecule 7 Chromosome CM026758.1 = NC_051275.1 Primary Assembly 36146424 na SUPER_8 assembled-molecule 8 Chromosome CM026759.1 = NC_051276.1 Primary Assembly 36006835 na SUPER_9 assembled-molecule 9 Chromosome CM026760.1 = NC_051277.1 Primary Assembly 35235349 na SUPER_10 assembled-molecule 10 Chromosome CM026761.1 = NC_051278.1 Primary Assembly 34964250 na SUPER_11 assembled-molecule 11 Chromosome CM026762.1 = NC_051279.1 Primary Assembly 34912176 na SUPER_12 assembled-molecule 12 Chromosome CM026763.1 = NC_051280.1 Primary Assembly 34196205 na SUPER_13 assembled-molecule 13 Chromosome CM026764.1 = NC_051281.1 Primary Assembly 33154565 na SUPER_14 assembled-molecule 14 Chromosome CM026765.1 = NC_051282.1 Primary Assembly 32625488 na SUPER_15 assembled-molecule 15 Chromosome CM026766.1 = NC_051283.1 Primary Assembly 32625529 na SUPER_16 assembled-molecule 16 Chromosome CM026767.1 = NC_051284.1 Primary Assembly 32153643 na SUPER_17 assembled-molecule 17 Chromosome CM026768.1 = NC_051285.1 Primary Assembly 30648620 na SUPER_18 assembled-molecule 18 Chromosome CM026769.1 = NC_051286.1 Primary Assembly 29458520 na SUPER_19 assembled-molecule 19 Chromosome CM026770.1 = NC_051287.1 Primary Assembly 28767290 na SUPER_20 assembled-molecule 20 Chromosome CM026771.1 = NC_051288.1 Primary Assembly 27725676 na SUPER_21 assembled-molecule 21 Chromosome CM026772.1 = NC_051289.1 Primary Assembly 27312080 na SUPER_22 assembled-molecule 22 Chromosome CM026773.1 = NC_051290.1 Primary Assembly 24788685 na SUPER_23 assembled-molecule 23 Chromosome CM026774.1 = NC_051291.1 Primary Assembly 23426545 na SUPER_24 assembled-molecule 24 Chromosome CM026775.1 = NC_051292.1 Primary Assembly 16640398 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JADCQQ010000001.1 = NW_023618430.1 Primary Assembly 101937 na SUPER_13_unloc_1 unlocalized-scaffold 13 Chromosome JADCQQ010000018.1 = NW_023618431.1 Primary Assembly 250492 na SUPER_13_unloc_2 unlocalized-scaffold 13 Chromosome JADCQQ010000019.1 = NW_023618432.1 Primary Assembly 178401 na SUPER_14_unloc_2 unlocalized-scaffold 14 Chromosome JADCQQ010000015.1 = NW_023618434.1 Primary Assembly 173117 na SUPER_14_unloc_1 unlocalized-scaffold 14 Chromosome JADCQQ010000016.1 = NW_023618433.1 Primary Assembly 278450 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome JADCQQ010000024.1 = NW_023618435.1 Primary Assembly 104377 na SUPER_22_unloc_1 unlocalized-scaffold 22 Chromosome JADCQQ010000033.1 = NW_023618436.1 Primary Assembly 113387 na SUPER_24_unloc_1 unlocalized-scaffold 24 Chromosome JADCQQ010000029.1 = NW_023618437.1 Primary Assembly 204126 na SUPER_24_unloc_2 unlocalized-scaffold 24 Chromosome JADCQQ010000030.1 = NW_023618438.1 Primary Assembly 114053 na S34 unplaced-scaffold na na JADCQQ010000034.1 = NW_023618439.1 Primary Assembly 246245 na S35 unplaced-scaffold na na JADCQQ010000035.1 = NW_023618440.1 Primary Assembly 422125 na S36 unplaced-scaffold na na JADCQQ010000036.1 = NW_023618441.1 Primary Assembly 251291 na S37 unplaced-scaffold na na JADCQQ010000037.1 = NW_023618442.1 Primary Assembly 161087 na scaffold_136_arrow_ctg1 unplaced-scaffold na na JADCQQ010000038.1 = NW_023618464.1 Primary Assembly 71225 na scaffold_32_arrow_ctg1 unplaced-scaffold na na JADCQQ010000039.1 = NW_023618532.1 Primary Assembly 173666 na scaffold_16_arrow_ctg1 unplaced-scaffold na na JADCQQ010000040.1 = NW_023618484.1 Primary Assembly 64152 na scaffold_15_arrow_ctg1 unplaced-scaffold na na JADCQQ010000041.1 = NW_023618477.1 Primary Assembly 32169 na scaffold_10_arrow_ctg1 unplaced-scaffold na na JADCQQ010000042.1 = NW_023618446.1 Primary Assembly 45793 na scaffold_105_arrow_ctg1 unplaced-scaffold na na JADCQQ010000043.1 = NW_023618443.1 Primary Assembly 107603 na scaffold_106_arrow_ctg1 unplaced-scaffold na na JADCQQ010000044.1 = NW_023618444.1 Primary Assembly 105840 na scaffold_109_arrow_ctg1 unplaced-scaffold na na JADCQQ010000045.1 = NW_023618445.1 Primary Assembly 104370 na scaffold_112_arrow_ctg1 unplaced-scaffold na na JADCQQ010000046.1 = NW_023618447.1 Primary Assembly 99780 na scaffold_113_arrow_ctg1 unplaced-scaffold na na JADCQQ010000047.1 = NW_023618448.1 Primary Assembly 98809 na scaffold_114_arrow_ctg1 unplaced-scaffold na na JADCQQ010000048.1 = NW_023618449.1 Primary Assembly 98658 na scaffold_119_arrow_ctg1 unplaced-scaffold na na JADCQQ010000049.1 = NW_023618450.1 Primary Assembly 90733 na scaffold_120_arrow_ctg1 unplaced-scaffold na na JADCQQ010000050.1 = NW_023618451.1 Primary Assembly 86800 na scaffold_121_arrow_ctg1 unplaced-scaffold na na JADCQQ010000051.1 = NW_023618452.1 Primary Assembly 87547 na scaffold_122_arrow_ctg1 unplaced-scaffold na na JADCQQ010000052.1 = NW_023618453.1 Primary Assembly 84445 na scaffold_126_arrow_ctg1 unplaced-scaffold na na JADCQQ010000053.1 = NW_023618454.1 Primary Assembly 77169 na scaffold_127_arrow_ctg1 unplaced-scaffold na na JADCQQ010000054.1 = NW_023618455.1 Primary Assembly 76524 na scaffold_128_arrow_ctg1 unplaced-scaffold na na JADCQQ010000055.1 = NW_023618456.1 Primary Assembly 75864 na scaffold_129_arrow_ctg1 unplaced-scaffold na na JADCQQ010000056.1 = NW_023618457.1 Primary Assembly 75517 na scaffold_130_arrow_ctg1 unplaced-scaffold na na JADCQQ010000057.1 = NW_023618458.1 Primary Assembly 74501 na scaffold_131_arrow_ctg1 unplaced-scaffold na na JADCQQ010000058.1 = NW_023618459.1 Primary Assembly 74818 na scaffold_132_arrow_ctg1 unplaced-scaffold na na JADCQQ010000059.1 = NW_023618460.1 Primary Assembly 74196 na scaffold_133_arrow_ctg1 unplaced-scaffold na na JADCQQ010000060.1 = NW_023618461.1 Primary Assembly 73345 na scaffold_134_arrow_ctg1 unplaced-scaffold na na JADCQQ010000061.1 = NW_023618462.1 Primary Assembly 72699 na scaffold_135_arrow_ctg1 unplaced-scaffold na na JADCQQ010000062.1 = NW_023618463.1 Primary Assembly 71536 na scaffold_141_arrow_ctg1 unplaced-scaffold na na JADCQQ010000063.1 = NW_023618465.1 Primary Assembly 64522 na scaffold_143_arrow_ctg1 unplaced-scaffold na na JADCQQ010000064.1 = NW_023618466.1 Primary Assembly 62348 na scaffold_144_arrow_ctg1 unplaced-scaffold na na JADCQQ010000065.1 = NW_023618467.1 Primary Assembly 60741 na scaffold_145_arrow_ctg1 unplaced-scaffold na na JADCQQ010000066.1 = NW_023618468.1 Primary Assembly 59442 na scaffold_146_arrow_ctg1 unplaced-scaffold na na JADCQQ010000067.1 = NW_023618469.1 Primary Assembly 10174 na scaffold_150_arrow_ctg1 unplaced-scaffold na na JADCQQ010000068.1 = NW_023618470.1 Primary Assembly 58209 na scaffold_151_arrow_ctg1 unplaced-scaffold na na JADCQQ010000069.1 = NW_023618471.1 Primary Assembly 57847 na scaffold_152_arrow_ctg1 unplaced-scaffold na na JADCQQ010000070.1 = NW_023618472.1 Primary Assembly 57411 na scaffold_153_arrow_ctg1 unplaced-scaffold na na JADCQQ010000071.1 = NW_023618473.1 Primary Assembly 57104 na scaffold_155_arrow_ctg1 unplaced-scaffold na na JADCQQ010000072.1 = NW_023618474.1 Primary Assembly 56904 na scaffold_158_arrow_ctg1 unplaced-scaffold na na JADCQQ010000073.1 = NW_023618475.1 Primary Assembly 54570 na scaffold_159_arrow_ctg1 unplaced-scaffold na na JADCQQ010000074.1 = NW_023618476.1 Primary Assembly 54391 na scaffold_161_arrow_ctg1 unplaced-scaffold na na JADCQQ010000075.1 = NW_023618478.1 Primary Assembly 52788 na scaffold_163_arrow_ctg1 unplaced-scaffold na na JADCQQ010000076.1 = NW_023618479.1 Primary Assembly 52159 na scaffold_164_arrow_ctg1 unplaced-scaffold na na JADCQQ010000077.1 = NW_023618480.1 Primary Assembly 52063 na scaffold_166_arrow_ctg1 unplaced-scaffold na na JADCQQ010000078.1 = NW_023618481.1 Primary Assembly 51365 na scaffold_168_arrow_ctg1 unplaced-scaffold na na JADCQQ010000079.1 = NW_023618482.1 Primary Assembly 50260 na scaffold_169_arrow_ctg1 unplaced-scaffold na na JADCQQ010000080.1 = NW_023618483.1 Primary Assembly 49436 na scaffold_170_arrow_ctg1 unplaced-scaffold na na JADCQQ010000081.1 = NW_023618485.1 Primary Assembly 49333 na scaffold_172_arrow_ctg1 unplaced-scaffold na na JADCQQ010000082.1 = NW_023618486.1 Primary Assembly 48336 na scaffold_173_arrow_ctg1 unplaced-scaffold na na JADCQQ010000083.1 = NW_023618487.1 Primary Assembly 48680 na scaffold_174_arrow_ctg1 unplaced-scaffold na na JADCQQ010000084.1 = NW_023618488.1 Primary Assembly 48018 na scaffold_175_arrow_ctg1 unplaced-scaffold na na JADCQQ010000085.1 = NW_023618489.1 Primary Assembly 47477 na scaffold_177_arrow_ctg1 unplaced-scaffold na na JADCQQ010000086.1 = NW_023618490.1 Primary Assembly 46746 na scaffold_178_arrow_ctg1 unplaced-scaffold na na JADCQQ010000087.1 = NW_023618491.1 Primary Assembly 46882 na scaffold_180_arrow_ctg1 unplaced-scaffold na na JADCQQ010000088.1 = NW_023618492.1 Primary Assembly 46310 na scaffold_182_arrow_ctg1 unplaced-scaffold na na JADCQQ010000089.1 = NW_023618493.1 Primary Assembly 43696 na scaffold_183_arrow_ctg1 unplaced-scaffold na na JADCQQ010000090.1 = NW_023618494.1 Primary Assembly 43652 na scaffold_184_arrow_ctg1 unplaced-scaffold na na JADCQQ010000091.1 = NW_023618495.1 Primary Assembly 42768 na scaffold_185_arrow_ctg1 unplaced-scaffold na na JADCQQ010000092.1 = NW_023618496.1 Primary Assembly 42464 na scaffold_187_arrow_ctg1 unplaced-scaffold na na JADCQQ010000093.1 = NW_023618497.1 Primary Assembly 42129 na scaffold_189_arrow_ctg1 unplaced-scaffold na na JADCQQ010000094.1 = NW_023618498.1 Primary Assembly 41579 na scaffold_190_arrow_ctg1 unplaced-scaffold na na JADCQQ010000095.1 = NW_023618499.1 Primary Assembly 40765 na scaffold_192_arrow_ctg1 unplaced-scaffold na na JADCQQ010000096.1 = NW_023618500.1 Primary Assembly 40549 na scaffold_194_arrow_ctg1 unplaced-scaffold na na JADCQQ010000097.1 = NW_023618501.1 Primary Assembly 39165 na scaffold_195_arrow_ctg1 unplaced-scaffold na na JADCQQ010000098.1 = NW_023618502.1 Primary Assembly 39231 na scaffold_196_arrow_ctg1 unplaced-scaffold na na JADCQQ010000099.1 = NW_023618503.1 Primary Assembly 38418 na scaffold_198_arrow_ctg1 unplaced-scaffold na na JADCQQ010000100.1 = NW_023618504.1 Primary Assembly 38339 na scaffold_199_arrow_ctg1 unplaced-scaffold na na JADCQQ010000101.1 = NW_023618505.1 Primary Assembly 38270 na scaffold_200_arrow_ctg1 unplaced-scaffold na na JADCQQ010000102.1 = NW_023618506.1 Primary Assembly 38104 na scaffold_201_arrow_ctg1 unplaced-scaffold na na JADCQQ010000103.1 = NW_023618507.1 Primary Assembly 36413 na scaffold_203_arrow_ctg1 unplaced-scaffold na na JADCQQ010000104.1 = NW_023618508.1 Primary Assembly 35189 na scaffold_204_arrow_ctg1 unplaced-scaffold na na JADCQQ010000105.1 = NW_023618509.1 Primary Assembly 34840 na scaffold_205_arrow_ctg1 unplaced-scaffold na na JADCQQ010000106.1 = NW_023618510.1 Primary Assembly 34679 na scaffold_206_arrow_ctg1 unplaced-scaffold na na JADCQQ010000107.1 = NW_023618511.1 Primary Assembly 33985 na scaffold_207_arrow_ctg1 unplaced-scaffold na na JADCQQ010000108.1 = NW_023618512.1 Primary Assembly 33753 na scaffold_208_arrow_ctg1 unplaced-scaffold na na JADCQQ010000109.1 = NW_023618513.1 Primary Assembly 32839 na scaffold_209_arrow_ctg1 unplaced-scaffold na na JADCQQ010000110.1 = NW_023618514.1 Primary Assembly 32835 na scaffold_210_arrow_ctg1 unplaced-scaffold na na JADCQQ010000111.1 = NW_023618515.1 Primary Assembly 31384 na scaffold_211_arrow_ctg1 unplaced-scaffold na na JADCQQ010000112.1 = NW_023618516.1 Primary Assembly 31237 na scaffold_212_arrow_ctg1 unplaced-scaffold na na JADCQQ010000113.1 = NW_023618517.1 Primary Assembly 31102 na scaffold_215_arrow_ctg1 unplaced-scaffold na na JADCQQ010000114.1 = NW_023618518.1 Primary Assembly 29418 na scaffold_216_arrow_ctg1 unplaced-scaffold na na JADCQQ010000115.1 = NW_023618519.1 Primary Assembly 27743 na scaffold_217_arrow_ctg1 unplaced-scaffold na na JADCQQ010000116.1 = NW_023618520.1 Primary Assembly 27412 na scaffold_218_arrow_ctg1 unplaced-scaffold na na JADCQQ010000117.1 = NW_023618521.1 Primary Assembly 26008 na scaffold_219_arrow_ctg1 unplaced-scaffold na na JADCQQ010000118.1 = NW_023618522.1 Primary Assembly 25196 na scaffold_221_arrow_ctg1 unplaced-scaffold na na JADCQQ010000119.1 = NW_023618523.1 Primary Assembly 24512 na scaffold_222_arrow_ctg1 unplaced-scaffold na na JADCQQ010000120.1 = NW_023618524.1 Primary Assembly 22772 na scaffold_223_arrow_ctg1 unplaced-scaffold na na JADCQQ010000121.1 = NW_023618525.1 Primary Assembly 22257 na scaffold_224_arrow_ctg1 unplaced-scaffold na na JADCQQ010000122.1 = NW_023618526.1 Primary Assembly 21389 na scaffold_225_arrow_ctg1 unplaced-scaffold na na JADCQQ010000123.1 = NW_023618527.1 Primary Assembly 21196 na scaffold_226_arrow_ctg1 unplaced-scaffold na na JADCQQ010000124.1 = NW_023618528.1 Primary Assembly 20509 na scaffold_227_arrow_ctg1 unplaced-scaffold na na JADCQQ010000125.1 = NW_023618529.1 Primary Assembly 17830 na scaffold_229_arrow_ctg1 unplaced-scaffold na na JADCQQ010000126.1 = NW_023618530.1 Primary Assembly 7215 na scaffold_230_arrow_ctg1 unplaced-scaffold na na JADCQQ010000127.1 = NW_023618531.1 Primary Assembly 3314 na scaffold_57_arrow_ctg1 unplaced-scaffold na na JADCQQ010000128.1 = NW_023618533.1 Primary Assembly 217730 na scaffold_65_arrow_ctg1 unplaced-scaffold na na JADCQQ010000129.1 = NW_023618534.1 Primary Assembly 182171 na scaffold_71_arrow_ctg1 unplaced-scaffold na na JADCQQ010000130.1 = NW_023618535.1 Primary Assembly 167199 na scaffold_72_arrow_ctg1 unplaced-scaffold na na JADCQQ010000131.1 = NW_023618536.1 Primary Assembly 162409 na scaffold_76_arrow_ctg1 unplaced-scaffold na na JADCQQ010000132.1 = NW_023618537.1 Primary Assembly 155123 na scaffold_77_arrow_ctg1 unplaced-scaffold na na JADCQQ010000133.1 = NW_023618538.1 Primary Assembly 151542 na scaffold_79_arrow_ctg1 unplaced-scaffold na na JADCQQ010000134.1 = NW_023618539.1 Primary Assembly 146466 na scaffold_80_arrow_ctg1 unplaced-scaffold na na JADCQQ010000135.1 = NW_023618540.1 Primary Assembly 143925 na scaffold_86_arrow_ctg1 unplaced-scaffold na na JADCQQ010000136.1 = NW_023618541.1 Primary Assembly 137484 na scaffold_88_arrow_ctg1 unplaced-scaffold na na JADCQQ010000137.1 = NW_023618542.1 Primary Assembly 137558 na scaffold_98_arrow_ctg1 unplaced-scaffold na na JADCQQ010000138.1 = NW_023618543.1 Primary Assembly 116618 na fSebUmb1_MT assembled-molecule MT Mitochondrion CM026822.1 <> na non-nuclear 17611 na