# Assembly name: rCheMyd1.pri # Organism name: Chelonia mydas (Green sea turtle) # Isolate: rCheMyd1 # Sex: male # Taxid: 8469 # BioSample: SAMN12612360 # BioProject: PRJNA561941 # Submitter: Vertebrate Genomes Project # Date: 2020-11-05 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADCQM01 # Assembly method: FALCON v. 1.3.0 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups github v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-08-11; VGP assembly pipeline v. 1.6 # Expected final version: no # Genome coverage: 60.0x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_015237465.1 # RefSeq assembly accession: GCF_015237465.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_015220195.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015237515.1 GCF_015237515.1 Primary Assembly ## GCF_000027655.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM026898.1 = NC_051241.1 Primary Assembly 348265484 na SUPER_2 assembled-molecule 2 Chromosome CM026899.1 = NC_051242.1 Primary Assembly 262513884 na SUPER_3 assembled-molecule 3 Chromosome CM026900.1 = NC_051243.1 Primary Assembly 204120564 na SUPER_4 assembled-molecule 4 Chromosome CM026901.1 = NC_051244.1 Primary Assembly 142324156 na SUPER_5 assembled-molecule 5 Chromosome CM026902.1 = NC_051245.1 Primary Assembly 134428053 na SUPER_6 assembled-molecule 6 Chromosome CM026903.1 = NC_051246.1 Primary Assembly 133272604 na SUPER_7 assembled-molecule 7 Chromosome CM026904.1 = NC_051247.1 Primary Assembly 123872898 na SUPER_8 assembled-molecule 8 Chromosome CM026905.1 = NC_051248.1 Primary Assembly 106505537 na SUPER_9 assembled-molecule 9 Chromosome CM026906.1 = NC_051249.1 Primary Assembly 101620591 na SUPER_10 assembled-molecule 10 Chromosome CM026907.1 = NC_051250.1 Primary Assembly 84054250 na SUPER_11 assembled-molecule 11 Chromosome CM026908.1 = NC_051251.1 Primary Assembly 79522289 na SUPER_12 assembled-molecule 12 Chromosome CM026909.1 = NC_051252.1 Primary Assembly 44456234 na SUPER_13 assembled-molecule 13 Chromosome CM026910.1 = NC_051253.1 Primary Assembly 42953438 na SUPER_14 assembled-molecule 14 Chromosome CM026911.1 = NC_051254.1 Primary Assembly 42626581 na SUPER_15 assembled-molecule 15 Chromosome CM026912.1 = NC_051255.1 Primary Assembly 33324608 na SUPER_16 assembled-molecule 16 Chromosome CM026913.1 = NC_051256.1 Primary Assembly 25690524 na SUPER_17 assembled-molecule 17 Chromosome CM026914.1 = NC_051257.1 Primary Assembly 25202864 na SUPER_18 assembled-molecule 18 Chromosome CM026915.1 = NC_051258.1 Primary Assembly 23386534 na SUPER_19 assembled-molecule 19 Chromosome CM026916.1 = NC_051259.1 Primary Assembly 19769559 na SUPER_20 assembled-molecule 20 Chromosome CM026917.1 = NC_051260.1 Primary Assembly 19256569 na SUPER_21 assembled-molecule 21 Chromosome CM026918.1 = NC_051261.1 Primary Assembly 19202859 na SUPER_22 assembled-molecule 22 Chromosome CM026919.1 = NC_051262.1 Primary Assembly 11152253 na SUPER_23 assembled-molecule 23 Chromosome CM026920.1 = NC_051263.1 Primary Assembly 9977174 na SUPER_24 assembled-molecule 24 Chromosome CM026921.1 = NC_051264.1 Primary Assembly 18854909 na SUPER_25 assembled-molecule 25 Chromosome CM026922.1 = NC_051265.1 Primary Assembly 16433863 na SUPER_26 assembled-molecule 26 Chromosome CM026923.1 = NC_051266.1 Primary Assembly 16225734 na SUPER_27 assembled-molecule 27 Chromosome CM026924.1 = NC_051267.1 Primary Assembly 16135183 na SUPER_28 assembled-molecule 28 Chromosome CM026925.1 = NC_051268.1 Primary Assembly 7864902 na SUPER_22_unloc_1 unlocalized-scaffold 22 Chromosome JADCQM010000050.1 = NW_023618336.1 Primary Assembly 7753707 na SUPER_23_unloc_1 unlocalized-scaffold 23 Chromosome JADCQM010000053.1 = NW_023618337.1 Primary Assembly 8903217 na scaffold_100_arrow_ctg1 unplaced-scaffold na na JADCQM010000001.1 = NW_023618338.1 Primary Assembly 46898 na scaffold_101_arrow_ctg1 unplaced-scaffold na na JADCQM010000002.1 = NW_023618339.1 Primary Assembly 45103 na scaffold_102_arrow_ctg1 unplaced-scaffold na na JADCQM010000003.1 = NW_023618340.1 Primary Assembly 44400 na scaffold_103_arrow_ctg1 unplaced-scaffold na na JADCQM010000004.1 = NW_023618341.1 Primary Assembly 44162 na scaffold_104_arrow_ctg1 unplaced-scaffold na na JADCQM010000005.1 = NW_023618342.1 Primary Assembly 43167 na scaffold_105_arrow_ctg1 unplaced-scaffold na na JADCQM010000006.1 = NW_023618343.1 Primary Assembly 40978 na scaffold_106_arrow_ctg1 unplaced-scaffold na na JADCQM010000007.1 = NW_023618344.1 Primary Assembly 39936 na scaffold_107_arrow_ctg1 unplaced-scaffold na na JADCQM010000008.1 = NW_023618345.1 Primary Assembly 37745 na scaffold_108_arrow_ctg1 unplaced-scaffold na na JADCQM010000009.1 = NW_023618346.1 Primary Assembly 34665 na scaffold_109_arrow_ctg1 unplaced-scaffold na na JADCQM010000010.1 = NW_023618347.1 Primary Assembly 32845 na scaffold_110_arrow_ctg1 unplaced-scaffold na na JADCQM010000012.1 = NW_023618348.1 Primary Assembly 31630 na scaffold_111_arrow_ctg1 unplaced-scaffold na na JADCQM010000013.1 = NW_023618349.1 Primary Assembly 31051 na scaffold_112_arrow_ctg1 unplaced-scaffold na na JADCQM010000014.1 = NW_023618350.1 Primary Assembly 27483 na scaffold_113_arrow_ctg1 unplaced-scaffold na na JADCQM010000015.1 = NW_023618351.1 Primary Assembly 27288 na scaffold_114_arrow_ctg1 unplaced-scaffold na na JADCQM010000016.1 = NW_023618352.1 Primary Assembly 27235 na scaffold_115_arrow_ctg1 unplaced-scaffold na na JADCQM010000017.1 = NW_023618353.1 Primary Assembly 21067 na scaffold_116_arrow_ctg1 unplaced-scaffold na na JADCQM010000018.1 = NW_023618354.1 Primary Assembly 20277 na scaffold_117_arrow_ctg1 unplaced-scaffold na na JADCQM010000019.1 = NW_023618355.1 Primary Assembly 16618 na scaffold_118_arrow_ctg1 unplaced-scaffold na na JADCQM010000020.1 = NW_023618356.1 Primary Assembly 16270 na scaffold_119_arrow_ctg1 unplaced-scaffold na na JADCQM010000021.1 = NW_023618357.1 Primary Assembly 14461 na scaffold_120_arrow_ctg1 unplaced-scaffold na na JADCQM010000023.1 = NW_023618358.1 Primary Assembly 13486 na scaffold_121_arrow_ctg1 unplaced-scaffold na na JADCQM010000024.1 = NW_023618359.1 Primary Assembly 11258 na scaffold_122_arrow_ctg1 unplaced-scaffold na na JADCQM010000025.1 = NW_023618360.1 Primary Assembly 8758 na scaffold_123_arrow_ctg1 unplaced-scaffold na na JADCQM010000026.1 = NW_023618361.1 Primary Assembly 8373 na scaffold_124_arrow_ctg1 unplaced-scaffold na na JADCQM010000027.1 = NW_023618362.1 Primary Assembly 8025 na scaffold_125_arrow_ctg1 unplaced-scaffold na na JADCQM010000028.1 = NW_023618363.1 Primary Assembly 6689 na scaffold_126_arrow_ctg1 unplaced-scaffold na na JADCQM010000029.1 = NW_023618364.1 Primary Assembly 6663 na scaffold_127_arrow_ctg1 unplaced-scaffold na na JADCQM010000030.1 = NW_023618365.1 Primary Assembly 3718 na scaffold_128_arrow_ctg1 unplaced-scaffold na na JADCQM010000031.1 = NW_023618366.1 Primary Assembly 3472 na scaffold_129_arrow_ctg1 unplaced-scaffold na na JADCQM010000032.1 = NW_023618367.1 Primary Assembly 3063 na scaffold_12B_arrow_ctg1 unplaced-scaffold na na JADCQM010000033.1 = NW_023618368.1 Primary Assembly 21116 na scaffold_42_arrow_ctg1 unplaced-scaffold na na JADCQM010000055.1 = NW_023618369.1 Primary Assembly 414693 na scaffold_45_arrow_ctg1 unplaced-scaffold na na JADCQM010000057.1 = NW_023618370.1 Primary Assembly 139352 na scaffold_48_arrow_ctg1 unplaced-scaffold na na JADCQM010000058.1 = NW_023618371.1 Primary Assembly 468323 na scaffold_49_arrow_ctg1 unplaced-scaffold na na JADCQM010000059.1 = NW_023618372.1 Primary Assembly 200098 na scaffold_59_arrow_ctg1 unplaced-scaffold na na JADCQM010000061.1 = NW_023618373.1 Primary Assembly 222063 na scaffold_60_arrow_ctg1 unplaced-scaffold na na JADCQM010000063.1 = NW_023618374.1 Primary Assembly 200034 na scaffold_61_arrow_ctg1 unplaced-scaffold na na JADCQM010000064.1 = NW_023618375.1 Primary Assembly 186729 na scaffold_63_arrow_ctg1 unplaced-scaffold na na JADCQM010000065.1 = NW_023618376.1 Primary Assembly 156755 na scaffold_65_arrow_ctg1 unplaced-scaffold na na JADCQM010000066.1 = NW_023618377.1 Primary Assembly 139178 na scaffold_66_arrow_ctg1 unplaced-scaffold na na JADCQM010000067.1 = NW_023618378.1 Primary Assembly 136476 na scaffold_67_arrow_ctg1 unplaced-scaffold na na JADCQM010000068.1 = NW_023618379.1 Primary Assembly 131618 na scaffold_68_arrow_ctg1 unplaced-scaffold na na JADCQM010000069.1 = NW_023618380.1 Primary Assembly 130366 na scaffold_69_arrow_ctg1 unplaced-scaffold na na JADCQM010000070.1 = NW_023618381.1 Primary Assembly 104581 na scaffold_70_arrow_ctg1 unplaced-scaffold na na JADCQM010000072.1 = NW_023618382.1 Primary Assembly 91510 na scaffold_71_arrow_ctg1 unplaced-scaffold na na JADCQM010000073.1 = NW_023618383.1 Primary Assembly 87187 na scaffold_72_arrow_ctg1 unplaced-scaffold na na JADCQM010000074.1 = NW_023618384.1 Primary Assembly 84098 na scaffold_76_arrow_ctg1 unplaced-scaffold na na JADCQM010000075.1 = NW_023618385.1 Primary Assembly 81177 na scaffold_77_arrow_ctg1 unplaced-scaffold na na JADCQM010000076.1 = NW_023618386.1 Primary Assembly 76334 na scaffold_78_arrow_ctg1 unplaced-scaffold na na JADCQM010000077.1 = NW_023618387.1 Primary Assembly 74105 na scaffold_79_arrow_ctg1 unplaced-scaffold na na JADCQM010000078.1 = NW_023618388.1 Primary Assembly 73540 na scaffold_80_arrow_ctg1 unplaced-scaffold na na JADCQM010000080.1 = NW_023618389.1 Primary Assembly 73766 na scaffold_83_arrow_ctg1 unplaced-scaffold na na JADCQM010000081.1 = NW_023618390.1 Primary Assembly 68053 na scaffold_84_arrow_ctg1 unplaced-scaffold na na JADCQM010000082.1 = NW_023618391.1 Primary Assembly 67755 na scaffold_86_arrow_ctg1 unplaced-scaffold na na JADCQM010000083.1 = NW_023618392.1 Primary Assembly 65737 na scaffold_87_arrow_ctg1 unplaced-scaffold na na JADCQM010000084.1 = NW_023618393.1 Primary Assembly 62133 na scaffold_88_arrow_ctg1 unplaced-scaffold na na JADCQM010000085.1 = NW_023618394.1 Primary Assembly 61604 na scaffold_89_arrow_ctg1 unplaced-scaffold na na JADCQM010000086.1 = NW_023618395.1 Primary Assembly 61238 na scaffold_90_arrow_ctg1 unplaced-scaffold na na JADCQM010000088.1 = NW_023618396.1 Primary Assembly 59032 na scaffold_91_arrow_ctg1 unplaced-scaffold na na JADCQM010000089.1 = NW_023618397.1 Primary Assembly 53571 na scaffold_92_arrow_ctg1 unplaced-scaffold na na JADCQM010000090.1 = NW_023618398.1 Primary Assembly 51870 na scaffold_93_arrow_ctg1 unplaced-scaffold na na JADCQM010000091.1 = NW_023618399.1 Primary Assembly 51123 na scaffold_94_arrow_ctg1 unplaced-scaffold na na JADCQM010000092.1 = NW_023618400.1 Primary Assembly 50289 na scaffold_95_arrow_ctg1 unplaced-scaffold na na JADCQM010000093.1 = NW_023618401.1 Primary Assembly 51066 na scaffold_96_arrow_ctg1 unplaced-scaffold na na JADCQM010000094.1 = NW_023618402.1 Primary Assembly 48875 na scaffold_97_arrow_ctg1 unplaced-scaffold na na JADCQM010000095.1 = NW_023618403.1 Primary Assembly 48603 na scaffold_98_arrow_ctg1 unplaced-scaffold na na JADCQM010000096.1 = NW_023618404.1 Primary Assembly 48044 na scaffold_99_arrow_ctg1 unplaced-scaffold na na JADCQM010000097.1 = NW_023618405.1 Primary Assembly 46854 na MT assembled-molecule MT Mitochondrion na <> NC_000886.1 non-nuclear 16497 na