# Assembly name: rCheMyd1.pri.v2 # Organism name: Chelonia mydas (Green sea turtle) # Isolate: rCheMyd1 # Sex: male # Taxid: 8469 # BioSample: SAMN12612360 # BioProject: PRJNA561941 # Submitter: Vertebrate Genomes Project # Date: 2021-07-15 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADCQM02 # Assembly method: FALCON 1.3.0 v. 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2021-05-28; VGP assembly pipeline v. 1.6 # Expected final version: no # Genome coverage: 60.0x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Reference Genome # GenBank assembly accession: GCA_015237465.2 # RefSeq assembly accession: GCF_015237465.2 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_015220195.2 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015237515.2 GCF_015237515.2 Primary Assembly ## GCF_000027655.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM026898.1 = NC_057849.1 Primary Assembly 348265484 na SUPER_2 assembled-molecule 2 Chromosome CM026899.1 = NC_057850.1 Primary Assembly 262513884 na SUPER_3 assembled-molecule 3 Chromosome CM026900.1 = NC_057851.1 Primary Assembly 204120564 na SUPER_4 assembled-molecule 4 Chromosome CM026901.1 = NC_057852.1 Primary Assembly 142324156 na SUPER_5 assembled-molecule 5 Chromosome CM026902.2 = NC_051245.2 Primary Assembly 133272604 na SUPER_6 assembled-molecule 6 Chromosome CM026903.2 = NC_051246.2 Primary Assembly 134428053 na SUPER_7 assembled-molecule 7 Chromosome CM026904.1 = NC_057853.1 Primary Assembly 123872898 na SUPER_8 assembled-molecule 8 Chromosome CM026905.1 = NC_057854.1 Primary Assembly 106505537 na SUPER_9 assembled-molecule 9 Chromosome CM026906.1 = NC_057855.1 Primary Assembly 101620591 na SUPER_10 assembled-molecule 10 Chromosome CM026907.2 = NC_051250.2 Primary Assembly 84054250 na SUPER_11 assembled-molecule 11 Chromosome CM026908.2 = NC_051251.2 Primary Assembly 79522289 na SUPER_12 assembled-molecule 12 Chromosome CM026909.2 = NC_051252.2 Primary Assembly 42626581 na SUPER_13 assembled-molecule 13 Chromosome CM026910.2 = NC_051253.2 Primary Assembly 42953438 na SUPER_14 assembled-molecule 14 Chromosome CM026911.2 = NC_051254.2 Primary Assembly 44337225 na SUPER_15 assembled-molecule 15 Chromosome CM026912.1 = NC_057856.1 Primary Assembly 33324608 na SUPER_16 assembled-molecule 16 Chromosome CM026913.1 = NC_057857.1 Primary Assembly 25690524 na SUPER_17 assembled-molecule 17 Chromosome CM026914.2 = NC_051257.2 Primary Assembly 25202864 na SUPER_18 assembled-molecule 18 Chromosome CM026915.2 = NC_051258.2 Primary Assembly 23330747 na SUPER_19 assembled-molecule 19 Chromosome CM026916.2 = NC_051259.2 Primary Assembly 19769559 na SUPER_20 assembled-molecule 20 Chromosome CM026917.2 = NC_051260.2 Primary Assembly 18906060 na SUPER_21 assembled-molecule 21 Chromosome CM026918.2 = NC_051261.2 Primary Assembly 18854909 na SUPER_22 assembled-molecule 22 Chromosome CM026919.2 = NC_051262.2 Primary Assembly 19256569 na SUPER_23 assembled-molecule 23 Chromosome CM026920.2 = NC_051263.2 Primary Assembly 19295284 na SUPER_24 assembled-molecule 24 Chromosome CM026921.2 = NC_051264.2 Primary Assembly 19202859 na SUPER_25 assembled-molecule 25 Chromosome CM026922.1 = NC_057858.1 Primary Assembly 16433863 na SUPER_26 assembled-molecule 26 Chromosome CM026923.1 = NC_057859.1 Primary Assembly 16225734 na SUPER_27 assembled-molecule 27 Chromosome CM026924.1 = NC_057860.1 Primary Assembly 16135183 na SUPER_28 assembled-molecule 28 Chromosome CM026925.2 = NC_051268.2 Primary Assembly 8033983 na SUPER_28_unloc_1 unlocalized-scaffold 28 Chromosome JADCQM020000052.1 = NW_025111235.1 Primary Assembly 87187 na SUPER_28_unloc_2 unlocalized-scaffold 28 Chromosome JADCQM020000053.1 = NW_025111236.1 Primary Assembly 61604 na scaffold_100_arrow_ctg1 unplaced-scaffold na na JADCQM020000001.1 = NW_025111237.1 Primary Assembly 46898 na scaffold_101_arrow_ctg1 unplaced-scaffold na na JADCQM020000002.1 = NW_025111238.1 Primary Assembly 45103 na scaffold_102_arrow_ctg1 unplaced-scaffold na na JADCQM020000003.1 = NW_025111239.1 Primary Assembly 44400 na scaffold_103_arrow_ctg1 unplaced-scaffold na na JADCQM020000004.1 = NW_025111240.1 Primary Assembly 44162 na scaffold_104_arrow_ctg1 unplaced-scaffold na na JADCQM020000005.1 = NW_025111241.1 Primary Assembly 43167 na scaffold_105_arrow_ctg1 unplaced-scaffold na na JADCQM020000006.1 = NW_025111242.1 Primary Assembly 40978 na scaffold_106_arrow_ctg1 unplaced-scaffold na na JADCQM020000007.1 = NW_025111243.1 Primary Assembly 39936 na scaffold_107_arrow_ctg1 unplaced-scaffold na na JADCQM020000008.1 = NW_025111244.1 Primary Assembly 37745 na scaffold_108_arrow_ctg1 unplaced-scaffold na na JADCQM020000009.1 = NW_025111245.1 Primary Assembly 34665 na scaffold_109_arrow_ctg1 unplaced-scaffold na na JADCQM020000010.1 = NW_025111246.1 Primary Assembly 32845 na scaffold_110_arrow_ctg1 unplaced-scaffold na na JADCQM020000012.1 = NW_025111247.1 Primary Assembly 31630 na scaffold_111_arrow_ctg1 unplaced-scaffold na na JADCQM020000013.1 = NW_025111248.1 Primary Assembly 31051 na scaffold_112_arrow_ctg1 unplaced-scaffold na na JADCQM020000014.1 = NW_025111249.1 Primary Assembly 27483 na scaffold_113_arrow_ctg1 unplaced-scaffold na na JADCQM020000015.1 = NW_025111250.1 Primary Assembly 27288 na scaffold_114_arrow_ctg1 unplaced-scaffold na na JADCQM020000016.1 = NW_025111251.1 Primary Assembly 27235 na scaffold_115_arrow_ctg1 unplaced-scaffold na na JADCQM020000017.1 = NW_025111252.1 Primary Assembly 21067 na scaffold_116_arrow_ctg1 unplaced-scaffold na na JADCQM020000018.1 = NW_025111253.1 Primary Assembly 20277 na scaffold_117_arrow_ctg1 unplaced-scaffold na na JADCQM020000019.1 = NW_025111254.1 Primary Assembly 16618 na scaffold_118_arrow_ctg1 unplaced-scaffold na na JADCQM020000020.1 = NW_025111255.1 Primary Assembly 16270 na scaffold_119_arrow_ctg1 unplaced-scaffold na na JADCQM020000021.1 = NW_025111256.1 Primary Assembly 14461 na scaffold_120_arrow_ctg1 unplaced-scaffold na na JADCQM020000023.1 = NW_025111257.1 Primary Assembly 13486 na scaffold_121_arrow_ctg1 unplaced-scaffold na na JADCQM020000024.1 = NW_025111258.1 Primary Assembly 11258 na scaffold_122_arrow_ctg1 unplaced-scaffold na na JADCQM020000025.1 = NW_025111259.1 Primary Assembly 8758 na scaffold_123_arrow_ctg1 unplaced-scaffold na na JADCQM020000026.1 = NW_025111260.1 Primary Assembly 8373 na scaffold_124_arrow_ctg1 unplaced-scaffold na na JADCQM020000027.1 = NW_025111261.1 Primary Assembly 8025 na scaffold_125_arrow_ctg1 unplaced-scaffold na na JADCQM020000028.1 = NW_025111262.1 Primary Assembly 6689 na scaffold_126_arrow_ctg1 unplaced-scaffold na na JADCQM020000029.1 = NW_025111263.1 Primary Assembly 6663 na scaffold_127_arrow_ctg1 unplaced-scaffold na na JADCQM020000030.1 = NW_025111264.1 Primary Assembly 3718 na scaffold_128_arrow_ctg1 unplaced-scaffold na na JADCQM020000031.1 = NW_025111265.1 Primary Assembly 3472 na scaffold_129_arrow_ctg1 unplaced-scaffold na na JADCQM020000032.1 = NW_025111266.1 Primary Assembly 3063 na scaffold_45_arrow_ctg1 unplaced-scaffold na na JADCQM020000055.1 = NW_025111267.1 Primary Assembly 139352 na scaffold_48_arrow_ctg1 unplaced-scaffold na na JADCQM020000056.1 = NW_025111268.1 Primary Assembly 468323 na scaffold_49_arrow_ctg1 unplaced-scaffold na na JADCQM020000057.1 = NW_025111269.1 Primary Assembly 200098 na scaffold_59_arrow_ctg1 unplaced-scaffold na na JADCQM020000059.1 = NW_025111270.1 Primary Assembly 222063 na scaffold_60_arrow_ctg1 unplaced-scaffold na na JADCQM020000061.1 = NW_025111271.1 Primary Assembly 200034 na scaffold_61_arrow_ctg1 unplaced-scaffold na na JADCQM020000062.1 = NW_025111272.1 Primary Assembly 186729 na scaffold_63_arrow_ctg1 unplaced-scaffold na na JADCQM020000063.1 = NW_025111273.1 Primary Assembly 156755 na scaffold_65_arrow_ctg1 unplaced-scaffold na na JADCQM020000064.1 = NW_025111274.1 Primary Assembly 139178 na scaffold_66_arrow_ctg1 unplaced-scaffold na na JADCQM020000065.1 = NW_025111275.1 Primary Assembly 136476 na scaffold_67_arrow_ctg1 unplaced-scaffold na na JADCQM020000066.1 = NW_025111276.1 Primary Assembly 131618 na scaffold_69_arrow_ctg1 unplaced-scaffold na na JADCQM020000067.1 = NW_025111277.1 Primary Assembly 104581 na scaffold_70_arrow_ctg1 unplaced-scaffold na na JADCQM020000069.1 = NW_025111278.1 Primary Assembly 91510 na scaffold_72_arrow_ctg1 unplaced-scaffold na na JADCQM020000070.1 = NW_025111279.1 Primary Assembly 84098 na scaffold_76_arrow_ctg1 unplaced-scaffold na na JADCQM020000071.1 = NW_025111280.1 Primary Assembly 81177 na scaffold_77_arrow_ctg1 unplaced-scaffold na na JADCQM020000072.1 = NW_025111281.1 Primary Assembly 76334 na scaffold_78_arrow_ctg1 unplaced-scaffold na na JADCQM020000073.1 = NW_025111282.1 Primary Assembly 74105 na scaffold_79_arrow_ctg1 unplaced-scaffold na na JADCQM020000074.1 = NW_025111283.1 Primary Assembly 73540 na scaffold_80_arrow_ctg1 unplaced-scaffold na na JADCQM020000076.1 = NW_025111284.1 Primary Assembly 73766 na scaffold_83_arrow_ctg1 unplaced-scaffold na na JADCQM020000077.1 = NW_025111285.1 Primary Assembly 68053 na scaffold_84_arrow_ctg1 unplaced-scaffold na na JADCQM020000078.1 = NW_025111286.1 Primary Assembly 67755 na scaffold_86_arrow_ctg1 unplaced-scaffold na na JADCQM020000079.1 = NW_025111287.1 Primary Assembly 65737 na scaffold_87_arrow_ctg1 unplaced-scaffold na na JADCQM020000080.1 = NW_025111288.1 Primary Assembly 62133 na scaffold_90_arrow_ctg1 unplaced-scaffold na na JADCQM020000082.1 = NW_025111289.1 Primary Assembly 59032 na scaffold_91_arrow_ctg1 unplaced-scaffold na na JADCQM020000083.1 = NW_025111290.1 Primary Assembly 53571 na scaffold_92_arrow_ctg1 unplaced-scaffold na na JADCQM020000084.1 = NW_025111291.1 Primary Assembly 51870 na scaffold_93_arrow_ctg1 unplaced-scaffold na na JADCQM020000085.1 = NW_025111292.1 Primary Assembly 51123 na scaffold_94_arrow_ctg1 unplaced-scaffold na na JADCQM020000086.1 = NW_025111293.1 Primary Assembly 50289 na scaffold_95_arrow_ctg1 unplaced-scaffold na na JADCQM020000087.1 = NW_025111294.1 Primary Assembly 51066 na scaffold_96_arrow_ctg1 unplaced-scaffold na na JADCQM020000088.1 = NW_025111295.1 Primary Assembly 48875 na scaffold_97_arrow_ctg1 unplaced-scaffold na na JADCQM020000089.1 = NW_025111296.1 Primary Assembly 48603 na scaffold_98_arrow_ctg1 unplaced-scaffold na na JADCQM020000090.1 = NW_025111297.1 Primary Assembly 48044 na scaffold_99_arrow_ctg1 unplaced-scaffold na na JADCQM020000091.1 = NW_025111298.1 Primary Assembly 46854 na MT assembled-molecule MT Mitochondrion na <> NC_000886.1 non-nuclear 16497 na