# Assembly name: VPISU_Cqui_1.0_pri_paternal # Organism name: Culex quinquefasciatus (southern house mosquito) # Infraspecific name: strain=JHB # Sex: male # Taxid: 7176 # BioSample: SAMN15480861 # BioProject: PRJNA644878 # Submitter: None # Date: 2020-12-04 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADDTP01 # Assembly method: canu v. 1.8 # Expected final version: yes # Genome coverage: 76.0x # Sequencing technology: Oxford Nanopore MinION; Oxford Nanopore PromethION; Illumina; Bionano DLS; Hi-C; Oxford Nanopore Flongle # RefSeq category: Representative Genome # GenBank assembly accession: GCA_015732765.1 # RefSeq assembly accession: GCF_015732765.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_015732745.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_015732775.1 GCF_015732775.1 Primary Assembly ## GCF_015910465.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chr1 assembled-molecule 1 Chromosome CM027410.1 = NC_051861.1 Primary Assembly 132876167 na Chr2 assembled-molecule 2 Chromosome CM027411.1 = NC_051862.1 Primary Assembly 225161840 na Chr3 assembled-molecule 3 Chromosome CM027412.1 = NC_051863.1 Primary Assembly 201550677 na PGA_scaffold_11__1_contigs__length_69999 unplaced-scaffold na na JADDTP010000004.1 = NW_024037116.1 Primary Assembly 56489 na PGA_scaffold_12__1_contigs__length_119999 unplaced-scaffold na na JADDTP010000005.1 = NW_024037122.1 Primary Assembly 110474 na PGA_scaffold_13__1_contigs__length_79999 unplaced-scaffold na na JADDTP010000006.1 = NW_024037127.1 Primary Assembly 53722 na PGA_scaffold_20__1_contigs__length_39999 unplaced-scaffold na na JADDTP010000007.1 = NW_024037133.1 Primary Assembly 11481 na PGA_scaffold_21__1_contigs__length_39999 unplaced-scaffold na na JADDTP010000008.1 = NW_024037134.1 Primary Assembly 34380 na PGA_scaffold_22__1_contigs__length_39999 unplaced-scaffold na na JADDTP010000009.1 = NW_024037135.1 Primary Assembly 37085 na PGA_scaffold_23__1_contigs__length_64999 unplaced-scaffold na na JADDTP010000010.1 = NW_024037136.1 Primary Assembly 37332 na PGA_scaffold_24__1_contigs__length_99999 unplaced-scaffold na na JADDTP010000011.1 = NW_024037137.1 Primary Assembly 65194 na PGA_scaffold_27__1_contigs__length_2479999 unplaced-scaffold na na JADDTP010000012.1 = NW_024037138.1 Primary Assembly 2452512 na PGA_scaffold_29__1_contigs__length_789999 unplaced-scaffold na na JADDTP010000013.1 = NW_024037139.1 Primary Assembly 784059 na PGA_scaffold_36__1_contigs__length_4549999 unplaced-scaffold na na JADDTP010000014.1 = NW_024037140.1 Primary Assembly 4510534 na PGA_scaffold_38__1_contigs__length_99999 unplaced-scaffold na na JADDTP010000015.1 = NW_024037141.1 Primary Assembly 93391 na PGA_scaffold_52__1_contigs__length_1299999 unplaced-scaffold na na JADDTP010000016.1 = NW_024037142.1 Primary Assembly 1281769 na PGA_scaffold_53__1_contigs__length_969999 unplaced-scaffold na na JADDTP010000017.1 = NW_024037143.1 Primary Assembly 952774 na PGA_scaffold_58__1_contigs__length_729999 unplaced-scaffold na na JADDTP010000018.1 = NW_024037144.1 Primary Assembly 727583 na PGA_scaffold_59__1_contigs__length_89999 unplaced-scaffold na na JADDTP010000019.1 = NW_024037145.1 Primary Assembly 63961 na PGA_scaffold_60__1_contigs__length_99999 unplaced-scaffold na na JADDTP010000020.1 = NW_024037146.1 Primary Assembly 92851 na PGA_scaffold_61__1_contigs__length_39999 unplaced-scaffold na na JADDTP010000021.1 = NW_024037147.1 Primary Assembly 25720 na PGA_scaffold_62__1_contigs__length_89999 unplaced-scaffold na na JADDTP010000022.1 = NW_024037148.1 Primary Assembly 74224 na PGA_scaffold_64__1_contigs__length_84999 unplaced-scaffold na na JADDTP010000023.1 = NW_024037149.1 Primary Assembly 80784 na PGA_scaffold_65__1_contigs__length_44999 unplaced-scaffold na na JADDTP010000024.1 = NW_024037150.1 Primary Assembly 42595 na PGA_scaffold_66__1_contigs__length_69999 unplaced-scaffold na na JADDTP010000025.1 = NW_024037151.1 Primary Assembly 58893 na PGA_scaffold_67__1_contigs__length_89999 unplaced-scaffold na na JADDTP010000026.1 = NW_024037152.1 Primary Assembly 61522 na PGA_scaffold_68__1_contigs__length_69999 unplaced-scaffold na na JADDTP010000027.1 = NW_024037153.1 Primary Assembly 53422 na PGA_scaffold_69__1_contigs__length_79999 unplaced-scaffold na na JADDTP010000028.1 = NW_024037154.1 Primary Assembly 54470 na PGA_scaffold_70__1_contigs__length_309999 unplaced-scaffold na na JADDTP010000029.1 = NW_024037155.1 Primary Assembly 299669 na PGA_scaffold_71__1_contigs__length_59999 unplaced-scaffold na na JADDTP010000030.1 = NW_024037156.1 Primary Assembly 48572 na PGA_scaffold_72__1_contigs__length_79999 unplaced-scaffold na na JADDTP010000031.1 = NW_024037157.1 Primary Assembly 69931 na PGA_scaffold_73__1_contigs__length_119999 unplaced-scaffold na na JADDTP010000032.1 = NW_024037158.1 Primary Assembly 107633 na PGA_scaffold_78__1_contigs__length_574999 unplaced-scaffold na na JADDTP010000033.1 = NW_024037159.1 Primary Assembly 561206 na PGA_scaffold_83__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000034.1 = NW_024037160.1 Primary Assembly 46075 na PGA_scaffold_94__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000035.1 = NW_024037161.1 Primary Assembly 39353 na PGA_scaffold_98__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000036.1 = NW_024037162.1 Primary Assembly 16876 na PGA_scaffold_102__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000037.1 = NW_024037110.1 Primary Assembly 40342 na PGA_scaffold_108__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000038.1 = NW_024037111.1 Primary Assembly 1515 na PGA_scaffold_110__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000039.1 = NW_024037112.1 Primary Assembly 10467 na PGA_scaffold_112__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000040.1 = NW_024037113.1 Primary Assembly 18541 na PGA_scaffold_114__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000041.1 = NW_024037114.1 Primary Assembly 21980 na PGA_scaffold_116__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000042.1 = NW_024037115.1 Primary Assembly 17284 na PGA_scaffold_121__1_contigs__length_124999 unplaced-scaffold na na JADDTP010000043.1 = NW_024037117.1 Primary Assembly 122283 na PGA_scaffold_123__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000044.1 = NW_024037118.1 Primary Assembly 49776 na PGA_scaffold_125__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000045.1 = NW_024037119.1 Primary Assembly 47052 na PGA_scaffold_127__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000046.1 = NW_024037120.1 Primary Assembly 44630 na PGA_scaffold_129__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000047.1 = NW_024037121.1 Primary Assembly 38652 na PGA_scaffold_131__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000048.1 = NW_024037123.1 Primary Assembly 41109 na PGA_scaffold_136__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000049.1 = NW_024037124.1 Primary Assembly 11562 na PGA_scaffold_137__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000050.1 = NW_024037125.1 Primary Assembly 16936 na PGA_scaffold_138__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000051.1 = NW_024037126.1 Primary Assembly 3261 na PGA_scaffold_140__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000052.1 = NW_024037128.1 Primary Assembly 23709 na PGA_scaffold_141__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000053.1 = NW_024037129.1 Primary Assembly 23897 na PGA_scaffold_146__1_contigs__length_24999 unplaced-scaffold na na JADDTP010000054.1 = NW_024037130.1 Primary Assembly 18235 na PGA_scaffold_154__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000055.1 = NW_024037131.1 Primary Assembly 38571 na PGA_scaffold_160__1_contigs__length_49999 unplaced-scaffold na na JADDTP010000056.1 = NW_024037132.1 Primary Assembly 29423 na MT assembled-molecule MT Mitochondrion na <> NC_014574.1 non-nuclear 15587 na