# Assembly name: Prin_Dsan_1.0 # Organism name: Drosophila santomea (flies) # Infraspecific name: strain=STO CAGO 1482 # Sex: female # Taxid: 129105 # BioSample: SAMN15573959 # BioProject: PRJNA647033 # Submitter: Princeton University # Date: 2021-01-25 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAECZZ01 # Assembly method: FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d # Expected final version: yes # Genome coverage: 103.0x # Sequencing technology: PacBio RSII; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_016746245.1 # RefSeq assembly accession: GCF_016746245.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016746285.1 GCF_016746285.1 Primary Assembly ## GCA_016746315.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 2L assembled-molecule 2L Chromosome CM028588.1 = NC_053016.1 Primary Assembly 27914031 na 2R assembled-molecule 2R Chromosome CM028589.1 = NC_053017.1 Primary Assembly 22645789 na 3L assembled-molecule 3L Chromosome CM028590.1 = NC_053018.1 Primary Assembly 25613778 na 3R assembled-molecule 3R Chromosome CM028591.1 = NC_053019.1 Primary Assembly 29036999 na 4 assembled-molecule 4 Chromosome CM028586.1 = NC_053020.1 Primary Assembly 1429288 na X assembled-molecule X Chromosome CM028587.1 = NC_053021.1 Primary Assembly 22630658 na Segkk63_quiver_pilon_ctg1_scaf unplaced-scaffold na na JAECZZ010000007.1 = NW_024110779.1 Primary Assembly 789999 na Segkk97_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ010000008.1 = NW_024110812.1 Primary Assembly 71001 na Segkk57_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000009.1 = NW_024110772.1 Primary Assembly 45996 na Segkk81_quiver_pilon_misjoin2_scaf unplaced-scaffold na na JAECZZ010000010.1 = NW_024110802.1 Primary Assembly 10001 na Segkk107_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000011.1 = NW_024110722.1 Primary Assembly 82178 na Segkk28_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000012.1 = NW_024110744.1 Primary Assembly 63540 na Segkk81_quiver_pilon_ctg2_scaf unplaced-scaffold na na JAECZZ010000013.1 = NW_024110800.1 Primary Assembly 245999 na Segkk37_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000014.1 = NW_024110754.1 Primary Assembly 49402 na Segkk69_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000015.1 = NW_024110785.1 Primary Assembly 1663413 na Segkk54_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000016.1 = NW_024110769.1 Primary Assembly 30553 na Segkk86_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000017.1 = NW_024110806.1 Primary Assembly 407924 na Segkk9_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000018.1 = NW_024110814.1 Primary Assembly 509266 na Segkk26_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000019.1 = NW_024110742.1 Primary Assembly 69681 na Segkk81_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ010000020.1 = NW_024110801.1 Primary Assembly 22001 na Segkk72_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000021.1 = NW_024110789.1 Primary Assembly 10739 na Segkk88_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000022.1 = NW_024110807.1 Primary Assembly 98793 na Segkk68_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000023.1 = NW_024110784.1 Primary Assembly 13649 na Segkk16_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000024.1 = NW_024110732.1 Primary Assembly 174124 na Segkk83_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000025.1 = NW_024110803.1 Primary Assembly 1400439 na Segkk8_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000026.1 = NW_024110809.1 Primary Assembly 34515 na Segkk45_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000027.1 = NW_024110761.1 Primary Assembly 39530 na Segkk63_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ010000028.1 = NW_024110780.1 Primary Assembly 31001 na Segkk25_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000029.1 = NW_024110741.1 Primary Assembly 71803 na Segkk79_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ010000030.1 = NW_024110796.1 Primary Assembly 810001 na Segkk32_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000031.1 = NW_024110749.1 Primary Assembly 58116 na Segkk111_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000032.1 = NW_024110727.1 Primary Assembly 87870 na Segkk21_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000033.1 = NW_024110737.1 Primary Assembly 209163 na Segkk30_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000034.1 = NW_024110747.1 Primary Assembly 61990 na Segkk75_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000035.1 = NW_024110792.1 Primary Assembly 7376 na Segkk42_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000036.1 = NW_024110758.1 Primary Assembly 140161 na Segkk94_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ010000037.1 = NW_024110811.1 Primary Assembly 20001 na Segkk6_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000038.1 = NW_024110786.1 Primary Assembly 718785 na Segkk59_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000039.1 = NW_024110774.1 Primary Assembly 24453 na Segkk89_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000040.1 = NW_024110808.1 Primary Assembly 104256 na Segkk34_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000041.1 = NW_024110751.1 Primary Assembly 27976 na Segkk5_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000042.1 = NW_024110775.1 Primary Assembly 805100 na Segkk10_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000043.1 = NW_024110725.1 Primary Assembly 447112 na Segkk102_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000044.1 = NW_024110718.1 Primary Assembly 97357 na Segkk78_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000045.1 = NW_024110795.1 Primary Assembly 48676 na Segkk62_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000046.1 = NW_024110778.1 Primary Assembly 22632 na Segkk70_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000047.1 = NW_024110787.1 Primary Assembly 16052 na Segkk52_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000048.1 = NW_024110767.1 Primary Assembly 31078 na Segkk49_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000049.1 = NW_024110764.1 Primary Assembly 31932 na Segkk17_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000050.1 = NW_024110733.1 Primary Assembly 183428 na Segkk31_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000051.1 = NW_024110748.1 Primary Assembly 61238 na Segkk44_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000052.1 = NW_024110760.1 Primary Assembly 39792 na Segkk35_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000053.1 = NW_024110752.1 Primary Assembly 51106 na Segkk74_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000054.1 = NW_024110791.1 Primary Assembly 6469 na Segkk33_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000055.1 = NW_024110750.1 Primary Assembly 107246 na Segkk48_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000056.1 = NW_024110763.1 Primary Assembly 16754 na Segkk84_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000057.1 = NW_024110804.1 Primary Assembly 56743 na Segkk61_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000058.1 = NW_024110777.1 Primary Assembly 82882 na Segkk67_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000059.1 = NW_024110783.1 Primary Assembly 76544 na Segkk85_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000060.1 = NW_024110805.1 Primary Assembly 1359306 na Segkk71_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000061.1 = NW_024110788.1 Primary Assembly 14943 na Segkk29_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000062.1 = NW_024110745.1 Primary Assembly 61635 na Segkk60_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000063.1 = NW_024110776.1 Primary Assembly 21989 na Segkk77_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000064.1 = NW_024110794.1 Primary Assembly 17905 na Segkk15_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000065.1 = NW_024110731.1 Primary Assembly 169620 na Segkk109_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000066.1 = NW_024110724.1 Primary Assembly 185922 na Segkk80_quiver_pilon_misjoin1_scaf unplaced-scaffold na na JAECZZ010000067.1 = NW_024110798.1 Primary Assembly 14001 na Segkk40_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000068.1 = NW_024110756.1 Primary Assembly 47153 na Segkk73_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000069.1 = NW_024110790.1 Primary Assembly 10241 na Segkk98_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000070.1 = NW_024110813.1 Primary Assembly 91658 na Segkk36_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000071.1 = NW_024110753.1 Primary Assembly 50673 na Segkk64_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000072.1 = NW_024110781.1 Primary Assembly 20703 na Segkk106_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000073.1 = NW_024110721.1 Primary Assembly 61720 na Segkk53_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000074.1 = NW_024110768.1 Primary Assembly 30997 na Segkk18_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000075.1 = NW_024110734.1 Primary Assembly 146358 na Segkk19_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000076.1 = NW_024110735.1 Primary Assembly 131062 na Segkk23_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000077.1 = NW_024110739.1 Primary Assembly 93121 na Segkk38_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000078.1 = NW_024110755.1 Primary Assembly 48533 na Segkk104_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000079.1 = NW_024110719.1 Primary Assembly 145549 na Segkk55_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000080.1 = NW_024110770.1 Primary Assembly 27921 na Segkk11_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000081.1 = NW_024110728.1 Primary Assembly 395612 na Segkk43_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000082.1 = NW_024110759.1 Primary Assembly 27774 na Segkk13_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000083.1 = NW_024110730.1 Primary Assembly 342462 na Segkk80_quiver_pilon_misjoin2_scaf unplaced-scaffold na na JAECZZ010000084.1 = NW_024110799.1 Primary Assembly 16001 na Segkk24_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000085.1 = NW_024110740.1 Primary Assembly 72045 na Segkk65_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000086.1 = NW_024110782.1 Primary Assembly 30059 na Segkk50_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000087.1 = NW_024110765.1 Primary Assembly 30319 na Segkk7_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000088.1 = NW_024110797.1 Primary Assembly 620817 na Segkk108_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000089.1 = NW_024110723.1 Primary Assembly 37121 na Segkk20_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000090.1 = NW_024110736.1 Primary Assembly 115978 na Segkk76_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000091.1 = NW_024110793.1 Primary Assembly 16847 na Segkk56_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000092.1 = NW_024110771.1 Primary Assembly 28048 na Segkk51_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000093.1 = NW_024110766.1 Primary Assembly 31162 na Segkk101_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000094.1 = NW_024110717.1 Primary Assembly 1641459 na Segkk2_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000095.1 = NW_024110746.1 Primary Assembly 36777 na Segkk105_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000097.1 = NW_024110720.1 Primary Assembly 44210 na Segkk46_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000098.1 = NW_024110762.1 Primary Assembly 103329 na Segkk12_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000099.1 = NW_024110729.1 Primary Assembly 364786 na Segkk110_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000100.1 = NW_024110726.1 Primary Assembly 46509 na Segkk27_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000101.1 = NW_024110743.1 Primary Assembly 67462 na Segkk22_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000102.1 = NW_024110738.1 Primary Assembly 153041 na Segkk91_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000103.1 = NW_024110810.1 Primary Assembly 80412 na Segkk58_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000104.1 = NW_024110773.1 Primary Assembly 25570 na Segkk41_quiver_pilon_scaf unplaced-scaffold na na JAECZZ010000105.1 = NW_024110757.1 Primary Assembly 44800 na mtDNA assembled-molecule MT Mitochondrion CM028611.1 <> na non-nuclear 16004 na