# Assembly name: Prin_Dyak_Tai18E2_2.0 # Organism name: Drosophila yakuba (flies) # Infraspecific name: strain=Tai18E2 # Sex: female # Taxid: 7245 # BioSample: SAMN15573791 # BioProject: PRJNA647028 # Submitter: Princeton University # Date: 2021-01-25 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAEDAC01 # Assembly method: FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d # Expected final version: yes # Genome coverage: 80.0x # Sequencing technology: PacBio RSII; Illumina HiSeq # GenBank assembly accession: GCA_016746365.1 # RefSeq assembly accession: GCF_016746365.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016746375.1 GCF_016746375.1 Primary Assembly ## GCA_016746385.1 GCF_000028175.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name X assembled-molecule X Chromosome CM028598.1 = NC_052526.1 Primary Assembly 24674111 na 2L assembled-molecule 2L Chromosome CM028599.1 = NC_052527.1 Primary Assembly 31052823 na 2R assembled-molecule 2R Chromosome CM028600.1 = NC_052528.1 Primary Assembly 23815364 na 3L assembled-molecule 3L Chromosome CM028601.1 = NC_052529.1 Primary Assembly 25180726 na 3R assembled-molecule 3R Chromosome CM028602.1 = NC_052530.1 Primary Assembly 30730878 na 4 assembled-molecule 4 Chromosome CM028603.1 = NC_052531.1 Primary Assembly 1429810 na Segkk28_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000007.1 = NW_024095860.1 Primary Assembly 27412 na Segkk31_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000008.1 = NW_024095864.1 Primary Assembly 22337 na Segkk8_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000009.1 = NW_024095889.1 Primary Assembly 802935 na Segkk10_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000010.1 = NW_024095844.1 Primary Assembly 535835 na Segkk13_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000011.1 = NW_024095846.1 Primary Assembly 189191 na Segkk59_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000012.1 = NW_024095884.1 Primary Assembly 36143 na Segkk19_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000013.1 = NW_024095851.1 Primary Assembly 19598 na Segkk50_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000014.1 = NW_024095878.1 Primary Assembly 1889137 na Segkk57_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000015.1 = NW_024095882.1 Primary Assembly 538115 na Segkk25_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000016.1 = NW_024095857.1 Primary Assembly 40450 na Segkk20_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000017.1 = NW_024095852.1 Primary Assembly 46380 na Segkk23_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000018.1 = NW_024095855.1 Primary Assembly 42022 na Segkk4_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000019.1 = NW_024095877.1 Primary Assembly 1442533 na Segkk63_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000020.1 = NW_024095886.1 Primary Assembly 270115 na Segkk32_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000021.1 = NW_024095865.1 Primary Assembly 18111 na Segkk33_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000022.1 = NW_024095866.1 Primary Assembly 28790 na Segkk21_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000023.1 = NW_024095853.1 Primary Assembly 83577 na Segkk34_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000024.1 = NW_024095867.1 Primary Assembly 16576 na Segkk22_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000025.1 = NW_024095854.1 Primary Assembly 45724 na Segkk40_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000027.1 = NW_024095873.1 Primary Assembly 5685 na Segkk37_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000028.1 = NW_024095870.1 Primary Assembly 9998 na Segkk64_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000029.1 = NW_024095887.1 Primary Assembly 41654 na Segkk38_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000030.1 = NW_024095871.1 Primary Assembly 9371 na Segkk11_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000031.1 = NW_024095845.1 Primary Assembly 389324 na Segkk53_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000032.1 = NW_024095881.1 Primary Assembly 44893 na Segkk24_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000033.1 = NW_024095856.1 Primary Assembly 40364 na Segkk2_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000034.1 = NW_024095862.1 Primary Assembly 1888698 na Segkk39_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000035.1 = NW_024095872.1 Primary Assembly 8993 na Segkk16_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000036.1 = NW_024095849.1 Primary Assembly 66500 na Segkk15_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000037.1 = NW_024095848.1 Primary Assembly 82935 na Segkk17_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000038.1 = NW_024095850.1 Primary Assembly 137315 na Segkk42_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000039.1 = NW_024095874.1 Primary Assembly 11367 na Segkk58_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000040.1 = NW_024095883.1 Primary Assembly 41957 na Segkk35_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000041.1 = NW_024095868.1 Primary Assembly 15923 na Segkk44_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000042.1 = NW_024095876.1 Primary Assembly 23654 na Segkk65_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000043.1 = NW_024095888.1 Primary Assembly 51590 na Segkk29_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000044.1 = NW_024095861.1 Primary Assembly 52685 na Segkk51_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000045.1 = NW_024095879.1 Primary Assembly 264514 na Segkk5_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000046.1 = NW_024095885.1 Primary Assembly 1266834 na Segkk26_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000047.1 = NW_024095858.1 Primary Assembly 75914 na Segkk27_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000048.1 = NW_024095859.1 Primary Assembly 37755 na Segkk30_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000049.1 = NW_024095863.1 Primary Assembly 41291 na Segkk14_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000050.1 = NW_024095847.1 Primary Assembly 151341 na Segkk43_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000051.1 = NW_024095875.1 Primary Assembly 14666 na Segkk9_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000052.1 = NW_024095890.1 Primary Assembly 43715 na Segkk36_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000053.1 = NW_024095869.1 Primary Assembly 13070 na Segkk52_quiver_pilon_scaf unplaced-scaffold na na JAEDAC010000054.1 = NW_024095880.1 Primary Assembly 72433 na MT assembled-molecule MT Mitochondrion na <> NC_001322.1 non-nuclear 16019 na mtDNA assembled-molecule MT Mitochondrion CM028612.1 <> na non-nuclear 16021 na