# Assembly name: Prin_Dyak_Tai18E2_2.1 # Organism name: Drosophila yakuba (flies) # Infraspecific name: strain=Tai18E2 # Sex: female # Taxid: 7245 # BioSample: SAMN15573791 # BioProject: PRJNA647028 # Submitter: Princeton University # Date: 2021-07-30 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAEDAC02 # Assembly method: FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d # Expected final version: yes # Reference guided assembly: Drosophila melanogaster FlyBase release 6.26 # Genome coverage: 80.0x # Sequencing technology: PacBio RSII; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_016746365.2 # RefSeq assembly accession: GCF_016746365.2 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016746375.2 GCF_016746375.2 Primary Assembly ## GCA_016746385.2 GCF_000028175.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name X assembled-molecule X Chromosome CM028598.2 = NC_052526.2 Primary Assembly 24674056 na 2L assembled-molecule 2L Chromosome CM028599.2 = NC_052527.2 Primary Assembly 31052931 na 2R assembled-molecule 2R Chromosome CM028600.2 = NC_052528.2 Primary Assembly 23815334 na 3L assembled-molecule 3L Chromosome CM028601.2 = NC_052529.2 Primary Assembly 25180761 na 3R assembled-molecule 3R Chromosome CM028602.2 = NC_052530.2 Primary Assembly 30730773 na 4 assembled-molecule 4 Chromosome CM028603.2 = NC_052531.2 Primary Assembly 1429802 na Segkk28_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000007.1 = NW_025048799.1 Primary Assembly 27418 na Segkk31_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000008.1 = NW_025048803.1 Primary Assembly 22349 na Segkk8_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000009.1 = NW_025048828.1 Primary Assembly 802955 na Segkk10_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000010.1 = NW_025048783.1 Primary Assembly 535877 na Segkk13_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000011.1 = NW_025048785.1 Primary Assembly 189197 na Segkk59_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000012.1 = NW_025048823.1 Primary Assembly 36144 na Segkk19_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000013.1 = NW_025048790.1 Primary Assembly 19552 na Segkk50_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000014.1 = NW_025048817.1 Primary Assembly 1889104 na Segkk57_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000015.1 = NW_025048821.1 Primary Assembly 538108 na Segkk25_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000016.1 = NW_025048796.1 Primary Assembly 40463 na Segkk20_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000017.1 = NW_025048791.1 Primary Assembly 46392 na Segkk23_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000018.1 = NW_025048794.1 Primary Assembly 42033 na Segkk4_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000019.1 = NW_025048816.1 Primary Assembly 1442517 na Segkk63_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000020.1 = NW_025048825.1 Primary Assembly 270105 na Segkk32_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000021.1 = NW_025048804.1 Primary Assembly 18112 na Segkk33_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000022.1 = NW_025048805.1 Primary Assembly 28823 na Segkk21_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000023.1 = NW_025048792.1 Primary Assembly 83576 na Segkk34_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000024.1 = NW_025048806.1 Primary Assembly 16581 na Segkk22_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000025.1 = NW_025048793.1 Primary Assembly 45736 na Segkk40_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000027.1 = NW_025048812.1 Primary Assembly 5686 na Segkk37_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000028.1 = NW_025048809.1 Primary Assembly 9998 na Segkk64_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000029.1 = NW_025048826.1 Primary Assembly 41654 na Segkk38_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000030.1 = NW_025048810.1 Primary Assembly 9372 na Segkk11_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000031.1 = NW_025048784.1 Primary Assembly 389315 na Segkk53_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000032.1 = NW_025048820.1 Primary Assembly 44886 na Segkk24_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000033.1 = NW_025048795.1 Primary Assembly 40338 na Segkk2_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000034.1 = NW_025048801.1 Primary Assembly 1888708 na Segkk39_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000035.1 = NW_025048811.1 Primary Assembly 9019 na Segkk16_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000036.1 = NW_025048788.1 Primary Assembly 66476 na Segkk15_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000037.1 = NW_025048787.1 Primary Assembly 82936 na Segkk17_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000038.1 = NW_025048789.1 Primary Assembly 137306 na Segkk42_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000039.1 = NW_025048813.1 Primary Assembly 11367 na Segkk58_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000040.1 = NW_025048822.1 Primary Assembly 41958 na Segkk35_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000041.1 = NW_025048807.1 Primary Assembly 15923 na Segkk44_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000042.1 = NW_025048815.1 Primary Assembly 23661 na Segkk65_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000043.1 = NW_025048827.1 Primary Assembly 51595 na Segkk29_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000044.1 = NW_025048800.1 Primary Assembly 52694 na Segkk51_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000045.1 = NW_025048818.1 Primary Assembly 264526 na Segkk5_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000046.1 = NW_025048824.1 Primary Assembly 1266801 na Segkk26_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000047.1 = NW_025048797.1 Primary Assembly 75918 na Segkk27_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000048.1 = NW_025048798.1 Primary Assembly 37762 na Segkk30_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000049.1 = NW_025048802.1 Primary Assembly 41295 na Segkk14_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000050.1 = NW_025048786.1 Primary Assembly 151304 na Segkk43_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000051.1 = NW_025048814.1 Primary Assembly 14664 na Segkk9_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000052.1 = NW_025048829.1 Primary Assembly 43736 na Segkk36_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000053.1 = NW_025048808.1 Primary Assembly 13065 na Segkk52_quiver_pilon_scaf unplaced-scaffold na na JAEDAC020000054.1 = NW_025048819.1 Primary Assembly 72436 na MT assembled-molecule MT Mitochondrion na <> NC_001322.1 non-nuclear 16019 na Dyak_Tai18E2_mtDNA assembled-molecule MT Mitochondrion CM028612.2 <> na non-nuclear 16023 na