# Assembly name: Prin_Dsim_3.0 # Organism name: Drosophila simulans (flies) # Infraspecific name: strain=w501 # Sex: female # Taxid: 7240 # BioSample: SAMN06473875 # BioProject: PRJNA377886 # Submitter: Princeton University # Date: 2021-01-25 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: NGVV01 # Assembly method: FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; Quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d # Expected final version: yes # Genome coverage: 120.0x # Sequencing technology: PacBio; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_016746395.1 # RefSeq assembly accession: GCF_016746395.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016746405.1 GCF_016746405.1 Primary Assembly ## GCA_016746425.1 GCF_000045355.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 2L assembled-molecule 2L Chromosome CM028640.1 = NC_052520.1 Primary Assembly 23857432 na 2R assembled-molecule 2R Chromosome CM028641.1 = NC_052521.1 Primary Assembly 22319038 na 3L assembled-molecule 3L Chromosome CM028642.1 = NC_052522.1 Primary Assembly 23399919 na 3R assembled-molecule 3R Chromosome CM028643.1 = NC_052523.1 Primary Assembly 28149624 na 4 assembled-molecule 4 Chromosome CM028644.1 = NC_052524.1 Primary Assembly 1146871 na X assembled-molecule X Chromosome CM028645.1 = NC_052525.1 Primary Assembly 22032836 na Segkk68_quiver_pilon unplaced-scaffold na na NGVV01000007.1 = NW_024095808.1 Primary Assembly 21480 na Segkk26_quiver_pilon unplaced-scaffold na na NGVV01000008.1 = NW_024095765.1 Primary Assembly 99254 na Segkk49_quiver_pilon unplaced-scaffold na na NGVV01000009.1 = NW_024095788.1 Primary Assembly 31969 na Segkk80_quiver_pilon unplaced-scaffold na na NGVV01000010.1 = NW_024095821.1 Primary Assembly 24126 na Segkk88_quiver_pilon unplaced-scaffold na na NGVV01000011.1 = NW_024095827.1 Primary Assembly 101367 na Segkk35_quiver_pilon unplaced-scaffold na na NGVV01000012.1 = NW_024095774.1 Primary Assembly 76091 na Segkk79_quiver_pilon unplaced-scaffold na na NGVV01000013.1 = NW_024095819.1 Primary Assembly 4926 na Segkk31_quiver_pilon unplaced-scaffold na na NGVV01000014.1 = NW_024095770.1 Primary Assembly 56018 na Segkk24_quiver_pilon unplaced-scaffold na na NGVV01000015.1 = NW_024095763.1 Primary Assembly 109188 na Segkk33_quiver_pilon unplaced-scaffold na na NGVV01000016.1 = NW_024095772.1 Primary Assembly 72901 na Segkk64_quiver_pilon unplaced-scaffold na na NGVV01000017.1 = NW_024095804.1 Primary Assembly 16546 na Segkk18_quiver_pilon unplaced-scaffold na na NGVV01000018.1 = NW_024095757.1 Primary Assembly 134251 na Segkk12_quiver_pilon unplaced-scaffold na na NGVV01000019.1 = NW_024095751.1 Primary Assembly 282985 na Segkk39_quiver_pilon unplaced-scaffold na na NGVV01000020.1 = NW_024095778.1 Primary Assembly 58768 na Segkk23_quiver_pilon unplaced-scaffold na na NGVV01000021.1 = NW_024095762.1 Primary Assembly 117623 na Segkk57_quiver_pilon unplaced-scaffold na na NGVV01000022.1 = NW_024095796.1 Primary Assembly 21454 na Segkk50_quiver_pilon unplaced-scaffold na na NGVV01000023.1 = NW_024095789.1 Primary Assembly 58871 na Segkk21_quiver_pilon unplaced-scaffold na na NGVV01000024.1 = NW_024095760.1 Primary Assembly 131195 na Segkk94_quiver_pilon unplaced-scaffold na na NGVV01000025.1 = NW_024095832.1 Primary Assembly 178738 na Segkk14_quiver_pilon unplaced-scaffold na na NGVV01000026.1 = NW_024095753.1 Primary Assembly 241407 na Segkk29_quiver_pilon unplaced-scaffold na na NGVV01000027.1 = NW_024095768.1 Primary Assembly 128094 na Segkk7_quiver_pilon unplaced-scaffold na na NGVV01000028.1 = NW_024095820.1 Primary Assembly 693294 na Segkk13_quiver_pilon unplaced-scaffold na na NGVV01000029.1 = NW_024095752.1 Primary Assembly 230239 na Segkk96_quiver_pilon unplaced-scaffold na na NGVV01000030.1 = NW_024095834.1 Primary Assembly 43882 na Segkk61_quiver_pilon unplaced-scaffold na na NGVV01000031.1 = NW_024095801.1 Primary Assembly 58972 na Segkk9_quiver_pilon unplaced-scaffold na na NGVV01000032.1 = NW_024095837.1 Primary Assembly 395195 na Segkk81_quiver_pilon unplaced-scaffold na na NGVV01000033.1 = NW_024095822.1 Primary Assembly 29516 na Segkk45_quiver_pilon unplaced-scaffold na na NGVV01000034.1 = NW_024095784.1 Primary Assembly 43574 na Segkk42_quiver_pilon unplaced-scaffold na na NGVV01000035.1 = NW_024095781.1 Primary Assembly 56204 na Segkk8_quiver_pilon unplaced-scaffold na na NGVV01000036.1 = NW_024095828.1 Primary Assembly 480401 na Segkk27_quiver_pilon unplaced-scaffold na na NGVV01000037.1 = NW_024095766.1 Primary Assembly 98584 na Segkk76_quiver_pilon unplaced-scaffold na na NGVV01000038.1 = NW_024095816.1 Primary Assembly 8117 na Segkk92_quiver_pilon unplaced-scaffold na na NGVV01000039.1 = NW_024095830.1 Primary Assembly 75181 na Segkk17_quiver_pilon unplaced-scaffold na na NGVV01000040.1 = NW_024095756.1 Primary Assembly 182407 na Segkk16_quiver_pilon unplaced-scaffold na na NGVV01000041.1 = NW_024095755.1 Primary Assembly 232873 na Segkk77_quiver_pilon unplaced-scaffold na na NGVV01000042.1 = NW_024095817.1 Primary Assembly 8211 na Segkk32_quiver_pilon unplaced-scaffold na na NGVV01000043.1 = NW_024095771.1 Primary Assembly 75277 na Segkk58_quiver_pilon unplaced-scaffold na na NGVV01000044.1 = NW_024095797.1 Primary Assembly 21256 na Segkk60_quiver_pilon unplaced-scaffold na na NGVV01000045.1 = NW_024095800.1 Primary Assembly 20560 na Segkk28_quiver_pilon unplaced-scaffold na na NGVV01000046.1 = NW_024095767.1 Primary Assembly 94795 na Segkk22_quiver_pilon unplaced-scaffold na na NGVV01000047.1 = NW_024095761.1 Primary Assembly 109047 na Segkk36_quiver_pilon unplaced-scaffold na na NGVV01000048.1 = NW_024095775.1 Primary Assembly 69215 na Segkk93_quiver_pilon unplaced-scaffold na na NGVV01000049.1 = NW_024095831.1 Primary Assembly 24311 na Segkk72_quiver_pilon unplaced-scaffold na na NGVV01000050.1 = NW_024095812.1 Primary Assembly 11243 na Segkk15_quiver_pilon unplaced-scaffold na na NGVV01000051.1 = NW_024095754.1 Primary Assembly 295695 na Segkk55_quiver_pilon unplaced-scaffold na na NGVV01000052.1 = NW_024095794.1 Primary Assembly 23848 na Segkk90_quiver_pilon unplaced-scaffold na na NGVV01000053.1 = NW_024095829.1 Primary Assembly 51425 na Segkk51_quiver_pilon unplaced-scaffold na na NGVV01000054.1 = NW_024095790.1 Primary Assembly 28180 na Segkk54_quiver_pilon unplaced-scaffold na na NGVV01000055.1 = NW_024095793.1 Primary Assembly 18281 na Segkk46_quiver_pilon unplaced-scaffold na na NGVV01000056.1 = NW_024095785.1 Primary Assembly 42859 na Segkk78_quiver_pilon unplaced-scaffold na na NGVV01000057.1 = NW_024095818.1 Primary Assembly 5688 na Segkk53_quiver_pilon unplaced-scaffold na na NGVV01000058.1 = NW_024095792.1 Primary Assembly 27660 na Segkk59_quiver_pilon unplaced-scaffold na na NGVV01000059.1 = NW_024095798.1 Primary Assembly 24404 na Segkk62_quiver_pilon unplaced-scaffold na na NGVV01000060.1 = NW_024095802.1 Primary Assembly 20278 na Segkk95_quiver_pilon unplaced-scaffold na na NGVV01000061.1 = NW_024095833.1 Primary Assembly 36306 na Segkk38_quiver_pilon unplaced-scaffold na na NGVV01000062.1 = NW_024095777.1 Primary Assembly 61127 na Segkk67_quiver_pilon unplaced-scaffold na na NGVV01000063.1 = NW_024095807.1 Primary Assembly 14947 na Segkk52_quiver_pilon unplaced-scaffold na na NGVV01000064.1 = NW_024095791.1 Primary Assembly 23387 na Segkk83_quiver_pilon unplaced-scaffold na na NGVV01000065.1 = NW_024095824.1 Primary Assembly 16901 na Segkk73_quiver_pilon unplaced-scaffold na na NGVV01000066.1 = NW_024095813.1 Primary Assembly 11203 na Segkk10_quiver_pilon unplaced-scaffold na na NGVV01000067.1 = NW_024095749.1 Primary Assembly 327288 na Segkk63_quiver_pilon unplaced-scaffold na na NGVV01000068.1 = NW_024095803.1 Primary Assembly 19393 na Segkk20_quiver_pilon unplaced-scaffold na na NGVV01000069.1 = NW_024095759.1 Primary Assembly 109592 na Segkk40_quiver_pilon unplaced-scaffold na na NGVV01000070.1 = NW_024095779.1 Primary Assembly 60136 na Segkk98_quiver_pilon unplaced-scaffold na na NGVV01000071.1 = NW_024095836.1 Primary Assembly 30551 na Segkk66_quiver_pilon unplaced-scaffold na na NGVV01000072.1 = NW_024095806.1 Primary Assembly 15035 na Segkk43_quiver_pilon unplaced-scaffold na na NGVV01000073.1 = NW_024095782.1 Primary Assembly 40943 na Segkk87_quiver_pilon unplaced-scaffold na na NGVV01000074.1 = NW_024095826.1 Primary Assembly 1685561 na Segkk11_quiver_pilon unplaced-scaffold na na NGVV01000075.1 = NW_024095750.1 Primary Assembly 311466 na Segkk5_quiver_pilon unplaced-scaffold na na NGVV01000076.1 = NW_024095799.1 Primary Assembly 679182 na Segkk48_quiver_pilon unplaced-scaffold na na NGVV01000077.1 = NW_024095787.1 Primary Assembly 38930 na Segkk47_quiver_pilon unplaced-scaffold na na NGVV01000078.1 = NW_024095786.1 Primary Assembly 60778 na Segkk65_quiver_pilon unplaced-scaffold na na NGVV01000079.1 = NW_024095805.1 Primary Assembly 16081 na Segkk56_quiver_pilon unplaced-scaffold na na NGVV01000080.1 = NW_024095795.1 Primary Assembly 50058 na Segkk82_quiver_pilon unplaced-scaffold na na NGVV01000081.1 = NW_024095823.1 Primary Assembly 17456 na Segkk97_quiver_pilon unplaced-scaffold na na NGVV01000082.1 = NW_024095835.1 Primary Assembly 118029 na Segkk75_quiver_pilon unplaced-scaffold na na NGVV01000083.1 = NW_024095815.1 Primary Assembly 10674 na Segkk70_quiver_pilon unplaced-scaffold na na NGVV01000084.1 = NW_024095811.1 Primary Assembly 12116 na Segkk25_quiver_pilon unplaced-scaffold na na NGVV01000085.1 = NW_024095764.1 Primary Assembly 117140 na Segkk86_quiver_pilon unplaced-scaffold na na NGVV01000086.1 = NW_024095825.1 Primary Assembly 73672 na Segkk30_quiver_pilon unplaced-scaffold na na NGVV01000087.1 = NW_024095769.1 Primary Assembly 137106 na Segkk44_quiver_pilon unplaced-scaffold na na NGVV01000088.1 = NW_024095783.1 Primary Assembly 51003 na Segkk69_quiver_pilon unplaced-scaffold na na NGVV01000089.1 = NW_024095809.1 Primary Assembly 13794 na Segkk19_quiver_pilon unplaced-scaffold na na NGVV01000090.1 = NW_024095758.1 Primary Assembly 192558 na Segkk74_quiver_pilon unplaced-scaffold na na NGVV01000091.1 = NW_024095814.1 Primary Assembly 10901 na Segkk34_quiver_pilon unplaced-scaffold na na NGVV01000092.1 = NW_024095773.1 Primary Assembly 66757 na Segkk41_quiver_pilon unplaced-scaffold na na NGVV01000093.1 = NW_024095780.1 Primary Assembly 57390 na Segkk6_quiver_pilon unplaced-scaffold na na NGVV01000094.1 = NW_024095810.1 Primary Assembly 639239 na Segkk37_quiver_pilon unplaced-scaffold na na NGVV01000095.1 = NW_024095776.1 Primary Assembly 63175 na MT assembled-molecule MT Mitochondrion na <> NC_005781.1 non-nuclear 14972 na mtDNA assembled-molecule MT Mitochondrion CM028646.1 <> na non-nuclear 18934 na