# Assembly name: Prin_Dsim_3.1 # Organism name: Drosophila simulans (flies) # Infraspecific name: strain=w501 # Sex: female # Taxid: 7240 # BioSample: SAMN06473875 # BioProject: PRJNA377886 # Submitter: Princeton University # Date: 2021-10-05 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: NGVV02 # Assembly method: FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d # Expected final version: yes # Reference guided assembly: Drosophila melanogaster FlyBase release 6.26 # Genome coverage: 120.0x # Sequencing technology: PacBio RSII; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_016746395.2 # RefSeq assembly accession: GCF_016746395.2 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016746405.2 GCF_016746405.2 Primary Assembly ## GCA_016746425.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 2L assembled-molecule 2L Chromosome CM028640.2 = NC_052520.2 Primary Assembly 23857595 na 2R assembled-molecule 2R Chromosome CM028641.2 = NC_052521.2 Primary Assembly 22319025 na 3L assembled-molecule 3L Chromosome CM028642.2 = NC_052522.2 Primary Assembly 23399903 na 3R assembled-molecule 3R Chromosome CM028643.2 = NC_052523.2 Primary Assembly 28149585 na 4 assembled-molecule 4 Chromosome CM028644.2 = NC_052524.2 Primary Assembly 1146867 na X assembled-molecule X Chromosome CM028645.2 = NC_052525.2 Primary Assembly 22032822 na Segkk68_quiver_pilon unplaced-scaffold na na NGVV02000007.1 = NW_025416865.1 Primary Assembly 21480 na Segkk26_quiver_pilon unplaced-scaffold na na NGVV02000008.1 = NW_025416822.1 Primary Assembly 99271 na Segkk49_quiver_pilon unplaced-scaffold na na NGVV02000009.1 = NW_025416845.1 Primary Assembly 31969 na Segkk80_quiver_pilon unplaced-scaffold na na NGVV02000010.1 = NW_025416878.1 Primary Assembly 24126 na Segkk88_quiver_pilon unplaced-scaffold na na NGVV02000011.1 = NW_025416884.1 Primary Assembly 101365 na Segkk35_quiver_pilon unplaced-scaffold na na NGVV02000012.1 = NW_025416831.1 Primary Assembly 76094 na Segkk79_quiver_pilon unplaced-scaffold na na NGVV02000013.1 = NW_025416876.1 Primary Assembly 4925 na Segkk31_quiver_pilon unplaced-scaffold na na NGVV02000014.1 = NW_025416827.1 Primary Assembly 56021 na Segkk24_quiver_pilon unplaced-scaffold na na NGVV02000015.1 = NW_025416820.1 Primary Assembly 109203 na Segkk33_quiver_pilon unplaced-scaffold na na NGVV02000016.1 = NW_025416829.1 Primary Assembly 72919 na Segkk64_quiver_pilon unplaced-scaffold na na NGVV02000017.1 = NW_025416861.1 Primary Assembly 16550 na Segkk18_quiver_pilon unplaced-scaffold na na NGVV02000018.1 = NW_025416814.1 Primary Assembly 134261 na Segkk12_quiver_pilon unplaced-scaffold na na NGVV02000019.1 = NW_025416808.1 Primary Assembly 282987 na Segkk39_quiver_pilon unplaced-scaffold na na NGVV02000020.1 = NW_025416835.1 Primary Assembly 58769 na Segkk23_quiver_pilon unplaced-scaffold na na NGVV02000021.1 = NW_025416819.1 Primary Assembly 117619 na Segkk57_quiver_pilon unplaced-scaffold na na NGVV02000022.1 = NW_025416853.1 Primary Assembly 21441 na Segkk50_quiver_pilon unplaced-scaffold na na NGVV02000023.1 = NW_025416846.1 Primary Assembly 58875 na Segkk21_quiver_pilon unplaced-scaffold na na NGVV02000024.1 = NW_025416817.1 Primary Assembly 131208 na Segkk94_quiver_pilon unplaced-scaffold na na NGVV02000025.1 = NW_025416889.1 Primary Assembly 178737 na Segkk14_quiver_pilon unplaced-scaffold na na NGVV02000026.1 = NW_025416810.1 Primary Assembly 241405 na Segkk29_quiver_pilon unplaced-scaffold na na NGVV02000027.1 = NW_025416825.1 Primary Assembly 128094 na Segkk7_quiver_pilon unplaced-scaffold na na NGVV02000028.1 = NW_025416877.1 Primary Assembly 693337 na Segkk13_quiver_pilon unplaced-scaffold na na NGVV02000029.1 = NW_025416809.1 Primary Assembly 230241 na Segkk96_quiver_pilon unplaced-scaffold na na NGVV02000030.1 = NW_025416891.1 Primary Assembly 43881 na Segkk61_quiver_pilon unplaced-scaffold na na NGVV02000031.1 = NW_025416858.1 Primary Assembly 58982 na Segkk9_quiver_pilon unplaced-scaffold na na NGVV02000032.1 = NW_025416894.1 Primary Assembly 395173 na Segkk81_quiver_pilon unplaced-scaffold na na NGVV02000033.1 = NW_025416879.1 Primary Assembly 29526 na Segkk45_quiver_pilon unplaced-scaffold na na NGVV02000034.1 = NW_025416841.1 Primary Assembly 43580 na Segkk42_quiver_pilon unplaced-scaffold na na NGVV02000035.1 = NW_025416838.1 Primary Assembly 56192 na Segkk8_quiver_pilon unplaced-scaffold na na NGVV02000036.1 = NW_025416885.1 Primary Assembly 480410 na Segkk27_quiver_pilon unplaced-scaffold na na NGVV02000037.1 = NW_025416823.1 Primary Assembly 98587 na Segkk76_quiver_pilon unplaced-scaffold na na NGVV02000038.1 = NW_025416873.1 Primary Assembly 8086 na Segkk92_quiver_pilon unplaced-scaffold na na NGVV02000039.1 = NW_025416887.1 Primary Assembly 75162 na Segkk17_quiver_pilon unplaced-scaffold na na NGVV02000040.1 = NW_025416813.1 Primary Assembly 182398 na Segkk16_quiver_pilon unplaced-scaffold na na NGVV02000041.1 = NW_025416812.1 Primary Assembly 232879 na Segkk77_quiver_pilon unplaced-scaffold na na NGVV02000042.1 = NW_025416874.1 Primary Assembly 8211 na Segkk32_quiver_pilon unplaced-scaffold na na NGVV02000043.1 = NW_025416828.1 Primary Assembly 75265 na Segkk58_quiver_pilon unplaced-scaffold na na NGVV02000044.1 = NW_025416854.1 Primary Assembly 21257 na Segkk60_quiver_pilon unplaced-scaffold na na NGVV02000045.1 = NW_025416857.1 Primary Assembly 20575 na Segkk28_quiver_pilon unplaced-scaffold na na NGVV02000046.1 = NW_025416824.1 Primary Assembly 94749 na Segkk22_quiver_pilon unplaced-scaffold na na NGVV02000047.1 = NW_025416818.1 Primary Assembly 109050 na Segkk36_quiver_pilon unplaced-scaffold na na NGVV02000048.1 = NW_025416832.1 Primary Assembly 69221 na Segkk93_quiver_pilon unplaced-scaffold na na NGVV02000049.1 = NW_025416888.1 Primary Assembly 24312 na Segkk72_quiver_pilon unplaced-scaffold na na NGVV02000050.1 = NW_025416869.1 Primary Assembly 11243 na Segkk15_quiver_pilon unplaced-scaffold na na NGVV02000051.1 = NW_025416811.1 Primary Assembly 295704 na Segkk55_quiver_pilon unplaced-scaffold na na NGVV02000052.1 = NW_025416851.1 Primary Assembly 23849 na Segkk90_quiver_pilon unplaced-scaffold na na NGVV02000053.1 = NW_025416886.1 Primary Assembly 51425 na Segkk51_quiver_pilon unplaced-scaffold na na NGVV02000054.1 = NW_025416847.1 Primary Assembly 28180 na Segkk54_quiver_pilon unplaced-scaffold na na NGVV02000055.1 = NW_025416850.1 Primary Assembly 18282 na Segkk46_quiver_pilon unplaced-scaffold na na NGVV02000056.1 = NW_025416842.1 Primary Assembly 42861 na Segkk78_quiver_pilon unplaced-scaffold na na NGVV02000057.1 = NW_025416875.1 Primary Assembly 5691 na Segkk53_quiver_pilon unplaced-scaffold na na NGVV02000058.1 = NW_025416849.1 Primary Assembly 27667 na Segkk59_quiver_pilon unplaced-scaffold na na NGVV02000059.1 = NW_025416855.1 Primary Assembly 24404 na Segkk62_quiver_pilon unplaced-scaffold na na NGVV02000060.1 = NW_025416859.1 Primary Assembly 20284 na Segkk95_quiver_pilon unplaced-scaffold na na NGVV02000061.1 = NW_025416890.1 Primary Assembly 36306 na Segkk38_quiver_pilon unplaced-scaffold na na NGVV02000062.1 = NW_025416834.1 Primary Assembly 61130 na Segkk67_quiver_pilon unplaced-scaffold na na NGVV02000063.1 = NW_025416864.1 Primary Assembly 14945 na Segkk52_quiver_pilon unplaced-scaffold na na NGVV02000064.1 = NW_025416848.1 Primary Assembly 23395 na Segkk83_quiver_pilon unplaced-scaffold na na NGVV02000065.1 = NW_025416881.1 Primary Assembly 16909 na Segkk73_quiver_pilon unplaced-scaffold na na NGVV02000066.1 = NW_025416870.1 Primary Assembly 11210 na Segkk10_quiver_pilon unplaced-scaffold na na NGVV02000067.1 = NW_025416806.1 Primary Assembly 327280 na Segkk63_quiver_pilon unplaced-scaffold na na NGVV02000068.1 = NW_025416860.1 Primary Assembly 19393 na Segkk20_quiver_pilon unplaced-scaffold na na NGVV02000069.1 = NW_025416816.1 Primary Assembly 109591 na Segkk40_quiver_pilon unplaced-scaffold na na NGVV02000070.1 = NW_025416836.1 Primary Assembly 60136 na Segkk98_quiver_pilon unplaced-scaffold na na NGVV02000071.1 = NW_025416893.1 Primary Assembly 30549 na Segkk66_quiver_pilon unplaced-scaffold na na NGVV02000072.1 = NW_025416863.1 Primary Assembly 15035 na Segkk43_quiver_pilon unplaced-scaffold na na NGVV02000073.1 = NW_025416839.1 Primary Assembly 40943 na Segkk87_quiver_pilon unplaced-scaffold na na NGVV02000074.1 = NW_025416883.1 Primary Assembly 1685566 na Segkk11_quiver_pilon unplaced-scaffold na na NGVV02000075.1 = NW_025416807.1 Primary Assembly 311415 na Segkk5_quiver_pilon unplaced-scaffold na na NGVV02000076.1 = NW_025416856.1 Primary Assembly 679163 na Segkk48_quiver_pilon unplaced-scaffold na na NGVV02000077.1 = NW_025416844.1 Primary Assembly 38922 na Segkk47_quiver_pilon unplaced-scaffold na na NGVV02000078.1 = NW_025416843.1 Primary Assembly 60776 na Segkk65_quiver_pilon unplaced-scaffold na na NGVV02000079.1 = NW_025416862.1 Primary Assembly 16066 na Segkk56_quiver_pilon unplaced-scaffold na na NGVV02000080.1 = NW_025416852.1 Primary Assembly 50071 na Segkk82_quiver_pilon unplaced-scaffold na na NGVV02000081.1 = NW_025416880.1 Primary Assembly 17457 na Segkk97_quiver_pilon unplaced-scaffold na na NGVV02000082.1 = NW_025416892.1 Primary Assembly 118028 na Segkk75_quiver_pilon unplaced-scaffold na na NGVV02000083.1 = NW_025416872.1 Primary Assembly 10674 na Segkk70_quiver_pilon unplaced-scaffold na na NGVV02000084.1 = NW_025416868.1 Primary Assembly 12118 na Segkk25_quiver_pilon unplaced-scaffold na na NGVV02000085.1 = NW_025416821.1 Primary Assembly 117126 na Segkk86_quiver_pilon unplaced-scaffold na na NGVV02000086.1 = NW_025416882.1 Primary Assembly 73674 na Segkk30_quiver_pilon unplaced-scaffold na na NGVV02000087.1 = NW_025416826.1 Primary Assembly 137105 na Segkk44_quiver_pilon unplaced-scaffold na na NGVV02000088.1 = NW_025416840.1 Primary Assembly 51010 na Segkk69_quiver_pilon unplaced-scaffold na na NGVV02000089.1 = NW_025416866.1 Primary Assembly 13798 na Segkk19_quiver_pilon unplaced-scaffold na na NGVV02000090.1 = NW_025416815.1 Primary Assembly 192555 na Segkk74_quiver_pilon unplaced-scaffold na na NGVV02000091.1 = NW_025416871.1 Primary Assembly 10901 na Segkk34_quiver_pilon unplaced-scaffold na na NGVV02000092.1 = NW_025416830.1 Primary Assembly 66760 na Segkk41_quiver_pilon unplaced-scaffold na na NGVV02000093.1 = NW_025416837.1 Primary Assembly 57379 na Segkk6_quiver_pilon unplaced-scaffold na na NGVV02000094.1 = NW_025416867.1 Primary Assembly 639238 na Segkk37_quiver_pilon unplaced-scaffold na na NGVV02000095.1 = NW_025416833.1 Primary Assembly 63186 na Dsim_w501_mtDNA assembled-molecule MT Mitochondrion CM028646.2 <> na non-nuclear 18935 na