hub GCF_016772045.1 genome assembly
shortLabel Rambouillet sheep (U.Idaho 2021)
longLabel Rambouillet sheep (U.Idaho 2021)/Ovis aries/GCF_016772045.1_ARS-UI_Ramb_v2.0 genome assembly
useOneFile on
email hclawson@ucsc.edu
descriptionUrl html/GCF_016772045.1_ARS-UI_Ramb_v2.0.description.html

genome GCF_016772045.1
taxId 9940
groups groups.txt
description Rambouillet sheep (U.Idaho 2021)
twoBitPath GCF_016772045.1.2bit
twoBitBptUrl GCF_016772045.1.2bit.bpt
chromSizes GCF_016772045.1.chrom.sizes.txt
chromAliasBb GCF_016772045.1.chromAlias.bb
chromAuthority ucsc
organism ARS-UI_Ramb_v2.0 Feb. 2021
defaultPos NC_056054.1:92872400-92882400
scientificName Ovis aries
htmlPath html/GCF_016772045.1_ARS-UI_Ramb_v2.0.description.html
blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/016/772/045/GCF_016772045.1
transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/016/772/045/GCF_016772045.1
isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/016/772/045/GCF_016772045.1
liftOver.GCF_002742125.1 liftOver/GCF_016772045.1ToGCF_002742125.1.over.chain.gz
liftOver.GCF_016772045.2 liftOver/GCF_016772045.1ToGCF_016772045.2.over.chain.gz
liftOver.oviAri3 liftOver/GCF_016772045.1ToOviAri3.over.chain.gz
liftOver.oviAri4 liftOver/GCF_016772045.1ToOviAri4.over.chain.gz

track assembly
longLabel Assembly
shortLabel Assembly
visibility pack
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.assembly.bb
type bigBed 6
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.assembly
searchIndex name
searchTrix ixIxx/GCF_016772045.1_ARS-UI_Ramb_v2.0.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility full
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.gc5Base.bw
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.tanDups

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.rmsk.bb
xrefDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.rmsk.align.bb
maxWindowToDraw 5000000
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.repeatMasker

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.simpleRepeat.bb
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.simpleRepeat

track refSeqComposite
compositeTrack on
shortLabel NCBI RefSeq
longLabel RefSeq gene predictions from NCBI
group genes
visibility pack
type bigBed
dragAndDrop subTracks
allButtonPair on
dataVersion NCBI Ovis aries Annotation Release 104 (2021-07-03)
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.refSeqComposite
priority 2

        track ncbiRefSeq
        parent refSeqComposite on
        color 12,12,120
        altColor 120,12,12
        shortLabel RefSeq All
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_016772045.1_ARS-UI_Ramb_v2.0.ncbiRefSeq.ix
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.ncbiRefSeq.bb
        longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*)
        idXref ncbiRefSeqLink mrnaAcc name
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 1

        track ncbiRefSeqCurated
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Curated
        longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_016772045.1_ARS-UI_Ramb_v2.0.ncbiRefSeqCurated.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.ncbiRefSeqCurated.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 2

        track ncbiRefSeqPredicted
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Predicted
        longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_016772045.1_ARS-UI_Ramb_v2.0.ncbiRefSeqPredicted.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.ncbiRefSeqPredicted.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 3

        track ncbiRefSeqOther
        color 32,32,32
        parent refSeqComposite on
        shortLabel RefSeq Other
        longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)
        priority 4
        searchIndex name
        searchTrix ixIxx/GCF_016772045.1_ARS-UI_Ramb_v2.0.ncbiRefSeqOther.ix
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.ncbiRefSeqOther.bb
        type bigBed 12 +
        labelFields name
        skipEmptyFields on
        urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"

        track ncbiRefSeqPsl
        priority 5
        parent refSeqComposite off
        shortLabel RefSeq Alignments
        longLabel RefSeq Alignments of RNAs
        type bigPsl
        searchIndex name
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.bigPsl.bb
        indelDoubleInsert on
        indelQueryInsert on
        showDiffBasesAllScales .
        showDiffBasesMaxZoom 10000.0
        showCdsMaxZoom 10000.0
        showCdsAllScales .
        baseColorDefault diffCodons
        pslSequence no
        baseColorUseSequence lfExtra
        baseColorUseCds table given
        color 0,0,0

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility pack
type bigBed 4 +
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.windowMasker.bb
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.allGaps.bb
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility dense
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.augustus.bb
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCF_016772045.1_ARS-UI_Ramb_v2.0.xenoRefGene.ix
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.xenoRefGene

track GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain alignments to target sequence: GCF_016772045.1_ARS-UI_Ramb_v2.0
subGroup1 view Views chain=Chains synten=Syntenic rbest=Reciprocal_best liftover=Lift_over align=Alignment
subGroup2 species Assembly s000=GCF_016772045.2 s001=GCF_002742125.1 s002=oviAri4 s003=oviAri3
subGroup3 chainType chain_type c00=chain c01=syntenic c02=reciprocal_best c03=lift_over c04=chain_align c05=syntenic_align c06=reciprocal_align c07=lift_over_align
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=chainType dimensionY=species
sortOrder species=+ view=+ chainType=+
configurable on
html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet

    track GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewchain
    shortLabel Chains
    view chain
    visibility pack
    subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNet
    spectrum on

    track GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewSynTen
    shortLabel Syntenic
    view synten
    visibility pack
    subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNet
    spectrum on

    track GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewRBest
    shortLabel Reciprocal best
    view rbest
    visibility pack
    subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNet
    spectrum on

    track GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewLiftOver
    shortLabel Lift over
    view liftover
    visibility pack
    subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNet
    spectrum on

        track chainGCF_016772045.2
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewchain off
        subGroups view=chain species=s000 chainType=c00
        shortLabel sheep Chain
        longLabel sheep/GCF_016772045.2_ARS-UI_Ramb_v3.0 (2023-07-20) Chained Alignments
        type bigChain GCF_016772045.2
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainGCF_016772045.2.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainGCF_016772045.2Link.bb
        otherDb GCF_016772045.2
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.016

        track chainSynGCF_016772045.2
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewSynTen off
        subGroups view=synten species=s000 chainType=c01
        shortLabel sheep synChain
        longLabel sheep/GCF_016772045.2_ARS-UI_Ramb_v3.0 (2023-07-20) Chained Alignments
        type bigChain GCF_016772045.2
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainSynGCF_016772045.2.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainSynGCF_016772045.2Link.bb
        otherDb GCF_016772045.2
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.016

        track chainRBestGCF_016772045.2
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewRBest off
        subGroups view=rbest species=s000 chainType=c02
        shortLabel sheep rbChain
        longLabel sheep/GCF_016772045.2_ARS-UI_Ramb_v3.0 (2023-07-20) Chained Alignments
        type bigChain GCF_016772045.2
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainRBestGCF_016772045.2.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainRBestGCF_016772045.2Link.bb
        otherDb GCF_016772045.2
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.016

        track chainLiftOverGCF_016772045.2
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewLiftOver off
        subGroups view=liftover species=s000 chainType=c03
        shortLabel sheep loChain
        longLabel sheep/GCF_016772045.2_ARS-UI_Ramb_v3.0 (2023-07-20) Chained Alignments
        type bigChain GCF_016772045.2
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainLiftOverGCF_016772045.2.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainLiftOverGCF_016772045.2Link.bb
        otherDb GCF_016772045.2
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.016

        track chainGCF_002742125.1
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewchain off
        subGroups view=chain species=s001 chainType=c00
        shortLabel Rambouillet sheep Chain
        longLabel Rambouillet sheep/GCF_002742125.1_Oar_rambouillet_v1.0 (2017-11-02) Chained Alignments
        type bigChain GCF_002742125.1
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainGCF_002742125.1.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainGCF_002742125.1Link.bb
        otherDb GCF_002742125.1
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.214

        track chainSynGCF_002742125.1
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewSynTen off
        subGroups view=synten species=s001 chainType=c01
        shortLabel Rambouillet sheep synChain
        longLabel Rambouillet sheep/GCF_002742125.1_Oar_rambouillet_v1.0 (2017-11-02) Chained Alignments
        type bigChain GCF_002742125.1
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainSynGCF_002742125.1.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainSynGCF_002742125.1Link.bb
        otherDb GCF_002742125.1
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.214

        track chainRBestGCF_002742125.1
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewRBest off
        subGroups view=rbest species=s001 chainType=c02
        shortLabel Rambouillet sheep rbChain
        longLabel Rambouillet sheep/GCF_002742125.1_Oar_rambouillet_v1.0 (2017-11-02) Chained Alignments
        type bigChain GCF_002742125.1
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainRBestGCF_002742125.1.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainRBestGCF_002742125.1Link.bb
        otherDb GCF_002742125.1
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.214

        track chainLiftOverGCF_002742125.1
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewLiftOver off
        subGroups view=liftover species=s001 chainType=c03
        shortLabel Rambouillet sheep loChain
        longLabel Rambouillet sheep/GCF_002742125.1_Oar_rambouillet_v1.0 (2017-11-02) Chained Alignments
        type bigChain GCF_002742125.1
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainLiftOverGCF_002742125.1.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainLiftOverGCF_002742125.1Link.bb
        otherDb GCF_002742125.1
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.214

        track chainOviAri4
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewchain off
        subGroups view=chain species=s002 chainType=c00
        shortLabel Sheep/oviAri4 Chain
        longLabel Sheep/oviAri4/oviAri4 (Nov. 2015) Chained Alignments
        type bigChain oviAri4
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainOviAri4.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainOviAri4Link.bb
        otherDb oviAri4
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 2.868

        track chainSynOviAri4
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewSynTen off
        subGroups view=synten species=s002 chainType=c01
        shortLabel Sheep/oviAri4 synChain
        longLabel Sheep/oviAri4/oviAri4 (Nov. 2015) Chained Alignments
        type bigChain oviAri4
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainSynOviAri4.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainSynOviAri4Link.bb
        otherDb oviAri4
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 2.868

        track chainRBestOviAri4
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewRBest off
        subGroups view=rbest species=s002 chainType=c02
        shortLabel Sheep/oviAri4 rbChain
        longLabel Sheep/oviAri4/oviAri4 (Nov. 2015) Chained Alignments
        type bigChain oviAri4
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainRBestOviAri4.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainRBestOviAri4Link.bb
        otherDb oviAri4
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 2.868

        track chainLiftOverOviAri4
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewLiftOver off
        subGroups view=liftover species=s002 chainType=c03
        shortLabel Sheep/oviAri4 loChain
        longLabel Sheep/oviAri4/oviAri4 (Nov. 2015) Chained Alignments
        type bigChain oviAri4
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainLiftOverOviAri4.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainLiftOverOviAri4Link.bb
        otherDb oviAri4
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 2.868

        track chainOviAri3
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewchain off
        subGroups view=chain species=s003 chainType=c00
        shortLabel Sheep/oviAri3 Chain
        longLabel Sheep/oviAri3/oviAri3 (Aug. 2012) Chained Alignments
        type bigChain oviAri3
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainOviAri3.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainOviAri3Link.bb
        otherDb oviAri3
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 4.434

        track chainSynOviAri3
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewSynTen off
        subGroups view=synten species=s003 chainType=c01
        shortLabel Sheep/oviAri3 synChain
        longLabel Sheep/oviAri3/oviAri3 (Aug. 2012) Chained Alignments
        type bigChain oviAri3
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainSynOviAri3.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainSynOviAri3Link.bb
        otherDb oviAri3
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 4.434

        track chainRBestOviAri3
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewRBest off
        subGroups view=rbest species=s003 chainType=c02
        shortLabel Sheep/oviAri3 rbChain
        longLabel Sheep/oviAri3/oviAri3 (Aug. 2012) Chained Alignments
        type bigChain oviAri3
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainRBestOviAri3.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainRBestOviAri3Link.bb
        otherDb oviAri3
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 4.434

        track chainLiftOverOviAri3
        subTrack GCF_016772045.1_ARS-UI_Ramb_v2.0ChainNetViewLiftOver off
        subGroups view=liftover species=s003 chainType=c03
        shortLabel Sheep/oviAri3 loChain
        longLabel Sheep/oviAri3/oviAri3 (Aug. 2012) Chained Alignments
        type bigChain oviAri3
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainLiftOverOviAri3.bb
        linkDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainLiftOverOviAri3Link.bb
        otherDb oviAri3
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 4.434

    track GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
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        track netGCF_016772045.2
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        longLabel sheep/GCF_016772045.2_ARS-UI_Ramb_v3.0 (2023-07-20) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_016772045.2.net.bb
        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_016772045.2.net.summary.bb
        speciesOrder GCF_016772045.2
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.016

        track synNetGCF_016772045.2
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        type bigMaf
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        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_016772045.2.synNet.summary.bb
        speciesOrder GCF_016772045.2
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.016

        track rbestNetGCF_016772045.2
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        type bigMaf
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_016772045.2.rbestNet.bb
        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_016772045.2.rbestNet.summary.bb
        speciesOrder GCF_016772045.2
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.016

        track netGCF_002742125.1
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
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        type bigMaf
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        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_002742125.1.net.summary.bb
        speciesOrder GCF_002742125.1
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.214

        track synNetGCF_002742125.1
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
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        shortLabel Rambouillet sheep synNet
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        type bigMaf
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        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_002742125.1.synNet.summary.bb
        speciesOrder GCF_002742125.1
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.214

        track rbestNetGCF_002742125.1
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
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        type bigMaf
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_002742125.1.rbestNet.bb
        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_002742125.1.rbestNet.summary.bb
        speciesOrder GCF_002742125.1
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.214

        track liftOverNetGCF_002742125.1
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
        subGroups view=align species=s001 chainType=c07
        shortLabel Rambouillet sheep liftOverNet
        longLabel Rambouillet sheep/GCF_002742125.1_Oar_rambouillet_v1.0 (2017-11-02) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_002742125.1.liftOverNet.bb
        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.GCF_002742125.1.liftOverNet.summary.bb
        speciesOrder GCF_002742125.1
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 0.214

        track netOviAri4
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
        subGroups view=align species=s002 chainType=c04
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        longLabel Sheep/oviAri4/oviAri4 (Nov. 2015) Chained Alignments
        type bigMaf
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        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri4.net.summary.bb
        speciesOrder oviAri4
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 2.868

        track synNetOviAri4
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
        subGroups view=align species=s002 chainType=c05
        shortLabel Sheep/oviAri4 synNet
        longLabel Sheep/oviAri4/oviAri4 (Nov. 2015) Chained Alignments
        type bigMaf
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        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri4.synNet.summary.bb
        speciesOrder oviAri4
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 2.868

        track rbestNetOviAri4
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
        subGroups view=align species=s002 chainType=c06
        shortLabel Sheep/oviAri4 rbestNet
        longLabel Sheep/oviAri4/oviAri4 (Nov. 2015) Chained Alignments
        type bigMaf
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        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri4.rbestNet.summary.bb
        speciesOrder oviAri4
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 2.868

        track liftOverNetOviAri4
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
        subGroups view=align species=s002 chainType=c07
        shortLabel Sheep/oviAri4 liftOverNet
        longLabel Sheep/oviAri4/oviAri4 (Nov. 2015) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri4.liftOverNet.bb
        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri4.liftOverNet.summary.bb
        speciesOrder oviAri4
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 2.868

        track netOviAri3
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
        subGroups view=align species=s003 chainType=c04
        shortLabel Sheep/oviAri3 mafNet
        longLabel Sheep/oviAri3/oviAri3 (Aug. 2012) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri3.net.bb
        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri3.net.summary.bb
        speciesOrder oviAri3
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 4.434

        track synNetOviAri3
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        shortLabel Sheep/oviAri3 synNet
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        type bigMaf
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        speciesOrder oviAri3
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 4.434

        track rbestNetOviAri3
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        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri3.rbestNet.summary.bb
        speciesOrder oviAri3
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 4.434

        track liftOverNetOviAri3
        parent GCF_016772045.1_ARS-UI_Ramb_v2.0MafNetViewnet
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        longLabel Sheep/oviAri3/oviAri3 (Aug. 2012) Chained Alignments
        type bigMaf
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        summary bbi/GCF_016772045.1_ARS-UI_Ramb_v2.0.oviAri3.liftOverNet.summary.bb
        speciesOrder oviAri3
        html html/GCF_016772045.1_ARS-UI_Ramb_v2.0.chainNet
        priority 4.434