# Assembly name: ARS-UI_Ramb_v3.0 # Description: ARS-UI_Ramb_v3.0 assembly of the Rambouillet sheep breed with chrY from Churro contributed by UI/USU # Organism name: Ovis aries (sheep) # Infraspecific name: strain=OAR_USU_Benz2616 # Sex: female # Taxid: 9940 # BioProject: PRJNA675594 # Submitter: University of Idaho # Date: 2023-07-20 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAEVFA01 # Assembly method: Canu v. 1.8; Nanopolish v. 0.12.5; Salsa v. 2.2; PB Jelly v. 15.8.24; Freebayes v. 1.3.1 # Expected final version: yes # RefSeq category: Representative Genome # GenBank assembly accession: GCA_016772045.2 # RefSeq assembly accession: GCF_016772045.2 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016772055.2 GCF_016772055.2 Primary Assembly ## GCA_016772065.1 GCF_000030495.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_chr1 assembled-molecule 1 Chromosome CM028704.1 = NC_056054.1 Primary Assembly 278617202 na scaffold_chr2 assembled-molecule 2 Chromosome CM028705.1 = NC_056055.1 Primary Assembly 250202058 na scaffold_chr3 assembled-molecule 3 Chromosome CM028706.1 = NC_056056.1 Primary Assembly 226089100 na scaffold_chr4 assembled-molecule 4 Chromosome CM028707.1 = NC_056057.1 Primary Assembly 121578099 na scaffold_chr5 assembled-molecule 5 Chromosome CM028708.1 = NC_056058.1 Primary Assembly 108220788 na scaffold_chr6 assembled-molecule 6 Chromosome CM028709.1 = NC_056059.1 Primary Assembly 118469697 na scaffold_chr7 assembled-molecule 7 Chromosome CM028710.1 = NC_056060.1 Primary Assembly 101274418 na scaffold_chr8 assembled-molecule 8 Chromosome CM028711.1 = NC_056061.1 Primary Assembly 91792871 na scaffold_chr9 assembled-molecule 9 Chromosome CM028712.1 = NC_056062.1 Primary Assembly 95179658 na scaffold_chr10 assembled-molecule 10 Chromosome CM028713.1 = NC_056063.1 Primary Assembly 86459471 na scaffold_chr11 assembled-molecule 11 Chromosome CM028714.1 = NC_056064.1 Primary Assembly 62547497 na scaffold_chr12 assembled-molecule 12 Chromosome CM028715.1 = NC_056065.1 Primary Assembly 80403655 na scaffold_chr13 assembled-molecule 13 Chromosome CM028716.1 = NC_056066.1 Primary Assembly 83511835 na scaffold_chr14 assembled-molecule 14 Chromosome CM028717.1 = NC_056067.1 Primary Assembly 66516657 na scaffold_chr15 assembled-molecule 15 Chromosome CM028718.1 = NC_056068.1 Primary Assembly 82538637 na scaffold_chr16 assembled-molecule 16 Chromosome CM028719.1 = NC_056069.1 Primary Assembly 71897364 na scaffold_chr17 assembled-molecule 17 Chromosome CM028720.1 = NC_056070.1 Primary Assembly 73167223 na scaffold_chr18 assembled-molecule 18 Chromosome CM028721.1 = NC_056071.1 Primary Assembly 67984460 na scaffold_chr19 assembled-molecule 19 Chromosome CM028722.1 = NC_056072.1 Primary Assembly 60561550 na scaffold_chr20 assembled-molecule 20 Chromosome CM028723.1 = NC_056073.1 Primary Assembly 51451717 na scaffold_chr21 assembled-molecule 21 Chromosome CM028724.1 = NC_056074.1 Primary Assembly 47514194 na scaffold_chr22 assembled-molecule 22 Chromosome CM028725.1 = NC_056075.1 Primary Assembly 51512491 na scaffold_chr23 assembled-molecule 23 Chromosome CM028726.1 = NC_056076.1 Primary Assembly 62440644 na scaffold_chr24 assembled-molecule 24 Chromosome CM028727.1 = NC_056077.1 Primary Assembly 42630236 na scaffold_chr25 assembled-molecule 25 Chromosome CM028728.1 = NC_056078.1 Primary Assembly 44863754 na scaffold_chr26 assembled-molecule 26 Chromosome CM028729.1 = NC_056079.1 Primary Assembly 45052359 na scaffold_chrX assembled-molecule X Chromosome CM028730.1 = NC_056080.1 Primary Assembly 143171725 na Y assembled-molecule Y Chromosome CP128831.1 = NC_082741.1 Primary Assembly 25917078 na scaffold_101 unplaced-scaffold na na JAEVFA010000001.1 = NW_024599719.1 Primary Assembly 384316 na scaffold_1030 unplaced-scaffold na na JAEVFA010000002.1 = NW_024599720.1 Primary Assembly 80683 na scaffold_1031 unplaced-scaffold na na JAEVFA010000003.1 = NW_024599721.1 Primary Assembly 80044 na scaffold_1054 unplaced-scaffold na na JAEVFA010000004.1 = NW_024599722.1 Primary Assembly 55968 na scaffold_1078 unplaced-scaffold na na JAEVFA010000005.1 = NW_024599723.1 Primary Assembly 76148 na scaffold_108 unplaced-scaffold na na JAEVFA010000006.1 = NW_024599724.1 Primary Assembly 346717 na scaffold_1093 unplaced-scaffold na na JAEVFA010000007.1 = NW_024599725.1 Primary Assembly 24427 na scaffold_1095 unplaced-scaffold na na JAEVFA010000008.1 = NW_024599726.1 Primary Assembly 73472 na scaffold_110 unplaced-scaffold na na JAEVFA010000009.1 = NW_024599727.1 Primary Assembly 332999 na scaffold_111 unplaced-scaffold na na JAEVFA010000010.1 = NW_024599728.1 Primary Assembly 290333 na scaffold_1132 unplaced-scaffold na na JAEVFA010000011.1 = NW_024599729.1 Primary Assembly 65515 na scaffold_114 unplaced-scaffold na na JAEVFA010000012.1 = NW_024599730.1 Primary Assembly 238636 na scaffold_1140 unplaced-scaffold na na JAEVFA010000013.1 = NW_024599731.1 Primary Assembly 61416 na scaffold_1157 unplaced-scaffold na na JAEVFA010000014.1 = NW_024599732.1 Primary Assembly 58259 na scaffold_1160 unplaced-scaffold na na JAEVFA010000015.1 = NW_024599733.1 Primary Assembly 53848 na scaffold_1167 unplaced-scaffold na na JAEVFA010000016.1 = NW_024599734.1 Primary Assembly 39120 na scaffold_1171 unplaced-scaffold na na JAEVFA010000017.1 = NW_024599735.1 Primary Assembly 35026 na scaffold_1173 unplaced-scaffold na na JAEVFA010000018.1 = NW_024599736.1 Primary Assembly 33429 na scaffold_1175 unplaced-scaffold na na JAEVFA010000019.1 = NW_024599737.1 Primary Assembly 32548 na scaffold_1176 unplaced-scaffold na na JAEVFA010000020.1 = NW_024599738.1 Primary Assembly 31945 na scaffold_1177 unplaced-scaffold na na JAEVFA010000021.1 = NW_024599739.1 Primary Assembly 31846 na scaffold_1179 unplaced-scaffold na na JAEVFA010000022.1 = NW_024599740.1 Primary Assembly 31479 na scaffold_1182 unplaced-scaffold na na JAEVFA010000023.1 = NW_024599741.1 Primary Assembly 30733 na scaffold_1183 unplaced-scaffold na na JAEVFA010000024.1 = NW_024599742.1 Primary Assembly 30707 na scaffold_1187 unplaced-scaffold na na JAEVFA010000025.1 = NW_024599743.1 Primary Assembly 28556 na scaffold_1189 unplaced-scaffold na na JAEVFA010000026.1 = NW_024599744.1 Primary Assembly 27612 na scaffold_1191 unplaced-scaffold na na JAEVFA010000027.1 = NW_024599745.1 Primary Assembly 25220 na scaffold_1193 unplaced-scaffold na na JAEVFA010000028.1 = NW_024599746.1 Primary Assembly 24943 na scaffold_1196 unplaced-scaffold na na JAEVFA010000029.1 = NW_024599747.1 Primary Assembly 24045 na scaffold_1197 unplaced-scaffold na na JAEVFA010000030.1 = NW_024599748.1 Primary Assembly 23711 na scaffold_1198 unplaced-scaffold na na JAEVFA010000031.1 = NW_024599749.1 Primary Assembly 23430 na scaffold_1199 unplaced-scaffold na na JAEVFA010000032.1 = NW_024599750.1 Primary Assembly 23118 na scaffold_1200 unplaced-scaffold na na JAEVFA010000033.1 = NW_024599751.1 Primary Assembly 22611 na scaffold_1201 unplaced-scaffold na na JAEVFA010000034.1 = NW_024599752.1 Primary Assembly 22417 na scaffold_1203 unplaced-scaffold na na JAEVFA010000035.1 = NW_024599753.1 Primary Assembly 21027 na scaffold_1204 unplaced-scaffold na na JAEVFA010000036.1 = NW_024599754.1 Primary Assembly 20910 na scaffold_1211 unplaced-scaffold na na JAEVFA010000037.1 = NW_024599755.1 Primary Assembly 18514 na scaffold_1212 unplaced-scaffold na na JAEVFA010000038.1 = NW_024599756.1 Primary Assembly 17575 na scaffold_1215 unplaced-scaffold na na JAEVFA010000039.1 = NW_024599757.1 Primary Assembly 17176 na scaffold_1216 unplaced-scaffold na na JAEVFA010000040.1 = NW_024599758.1 Primary Assembly 16111 na scaffold_1218 unplaced-scaffold na na JAEVFA010000041.1 = NW_024599759.1 Primary Assembly 15499 na scaffold_1221 unplaced-scaffold na na JAEVFA010000042.1 = NW_024599760.1 Primary Assembly 13888 na scaffold_1223 unplaced-scaffold na na JAEVFA010000043.1 = NW_024599761.1 Primary Assembly 13058 na scaffold_1226 unplaced-scaffold na na JAEVFA010000044.1 = NW_024599762.1 Primary Assembly 12701 na scaffold_1227 unplaced-scaffold na na JAEVFA010000045.1 = NW_024599763.1 Primary Assembly 12271 na scaffold_123 unplaced-scaffold na na JAEVFA010000046.1 = NW_024599764.1 Primary Assembly 198975 na scaffold_1230 unplaced-scaffold na na JAEVFA010000047.1 = NW_024599765.1 Primary Assembly 12004 na scaffold_1232 unplaced-scaffold na na JAEVFA010000048.1 = NW_024599766.1 Primary Assembly 11372 na scaffold_1236 unplaced-scaffold na na JAEVFA010000049.1 = NW_024599767.1 Primary Assembly 11081 na scaffold_1238 unplaced-scaffold na na JAEVFA010000050.1 = NW_024599768.1 Primary Assembly 10479 na scaffold_1242 unplaced-scaffold na na JAEVFA010000051.1 = NW_024599769.1 Primary Assembly 9323 na scaffold_1243 unplaced-scaffold na na JAEVFA010000052.1 = NW_024599770.1 Primary Assembly 9029 na scaffold_1246 unplaced-scaffold na na JAEVFA010000053.1 = NW_024599771.1 Primary Assembly 8601 na scaffold_1247 unplaced-scaffold na na JAEVFA010000054.1 = NW_024599772.1 Primary Assembly 8224 na scaffold_1248 unplaced-scaffold na na JAEVFA010000055.1 = NW_024599773.1 Primary Assembly 8158 na scaffold_1249 unplaced-scaffold na na JAEVFA010000056.1 = NW_024599774.1 Primary Assembly 8000 na scaffold_125 unplaced-scaffold na na JAEVFA010000057.1 = NW_024599775.1 Primary Assembly 118355 na scaffold_1250 unplaced-scaffold na na JAEVFA010000058.1 = NW_024599776.1 Primary Assembly 7947 na scaffold_1253 unplaced-scaffold na na JAEVFA010000059.1 = NW_024599777.1 Primary Assembly 7714 na scaffold_1256 unplaced-scaffold na na JAEVFA010000060.1 = NW_024599778.1 Primary Assembly 7577 na scaffold_1257 unplaced-scaffold na na JAEVFA010000061.1 = NW_024599779.1 Primary Assembly 7389 na scaffold_1258 unplaced-scaffold na na JAEVFA010000062.1 = NW_024599780.1 Primary Assembly 7249 na scaffold_1260 unplaced-scaffold na na JAEVFA010000063.1 = NW_024599781.1 Primary Assembly 6695 na scaffold_1262 unplaced-scaffold na na JAEVFA010000064.1 = NW_024599782.1 Primary Assembly 6243 na scaffold_1264 unplaced-scaffold na na JAEVFA010000065.1 = NW_024599783.1 Primary Assembly 6109 na scaffold_1266 unplaced-scaffold na na JAEVFA010000066.1 = NW_024599784.1 Primary Assembly 6084 na scaffold_1267 unplaced-scaffold na na JAEVFA010000067.1 = NW_024599785.1 Primary Assembly 6005 na scaffold_1269 unplaced-scaffold na na JAEVFA010000068.1 = NW_024599786.1 Primary Assembly 3617 na scaffold_1270 unplaced-scaffold na na JAEVFA010000069.1 = NW_024599787.1 Primary Assembly 5687 na scaffold_1272 unplaced-scaffold na na JAEVFA010000070.1 = NW_024599788.1 Primary Assembly 4746 na scaffold_1280 unplaced-scaffold na na JAEVFA010000071.1 = NW_024599789.1 Primary Assembly 3801 na scaffold_1285 unplaced-scaffold na na JAEVFA010000072.1 = NW_024599790.1 Primary Assembly 3305 na scaffold_1286 unplaced-scaffold na na JAEVFA010000073.1 = NW_024599791.1 Primary Assembly 3172 na scaffold_1287 unplaced-scaffold na na JAEVFA010000074.1 = NW_024599792.1 Primary Assembly 2978 na scaffold_1296 unplaced-scaffold na na JAEVFA010000075.1 = NW_024599793.1 Primary Assembly 2396 na scaffold_1299 unplaced-scaffold na na JAEVFA010000076.1 = NW_024599794.1 Primary Assembly 2190 na scaffold_1303 unplaced-scaffold na na JAEVFA010000077.1 = NW_024599795.1 Primary Assembly 1913 na scaffold_1305 unplaced-scaffold na na JAEVFA010000078.1 = NW_024599796.1 Primary Assembly 1679 na scaffold_1306 unplaced-scaffold na na JAEVFA010000079.1 = NW_024599797.1 Primary Assembly 1672 na scaffold_1314 unplaced-scaffold na na JAEVFA010000080.1 = NW_024599798.1 Primary Assembly 1459 na scaffold_1316 unplaced-scaffold na na JAEVFA010000081.1 = NW_024599799.1 Primary Assembly 1399 na scaffold_1317 unplaced-scaffold na na JAEVFA010000082.1 = NW_024599800.1 Primary Assembly 1398 na scaffold_133 unplaced-scaffold na na JAEVFA010000083.1 = NW_024599801.1 Primary Assembly 142043 na scaffold_134 unplaced-scaffold na na JAEVFA010000084.1 = NW_024599802.1 Primary Assembly 123947 na scaffold_135 unplaced-scaffold na na JAEVFA010000085.1 = NW_024599803.1 Primary Assembly 220456 na scaffold_143 unplaced-scaffold na na JAEVFA010000086.1 = NW_024599804.1 Primary Assembly 37706 na scaffold_144 unplaced-scaffold na na JAEVFA010000087.1 = NW_024599805.1 Primary Assembly 221741 na scaffold_153 unplaced-scaffold na na JAEVFA010000088.1 = NW_024599806.1 Primary Assembly 214238 na scaffold_163 unplaced-scaffold na na JAEVFA010000089.1 = NW_024599807.1 Primary Assembly 34126 na scaffold_169 unplaced-scaffold na na JAEVFA010000090.1 = NW_024599808.1 Primary Assembly 196526 na scaffold_170 unplaced-scaffold na na JAEVFA010000091.1 = NW_024599809.1 Primary Assembly 85611 na scaffold_173 unplaced-scaffold na na JAEVFA010000092.1 = NW_024599810.1 Primary Assembly 45136 na scaffold_175 unplaced-scaffold na na JAEVFA010000093.1 = NW_024599811.1 Primary Assembly 15384 na scaffold_178 unplaced-scaffold na na JAEVFA010000094.1 = NW_024599812.1 Primary Assembly 184850 na scaffold_181 unplaced-scaffold na na JAEVFA010000095.1 = NW_024599813.1 Primary Assembly 57949 na scaffold_188 unplaced-scaffold na na JAEVFA010000096.1 = NW_024599814.1 Primary Assembly 49504 na scaffold_195 unplaced-scaffold na na JAEVFA010000097.1 = NW_024599815.1 Primary Assembly 119075 na scaffold_202 unplaced-scaffold na na JAEVFA010000098.1 = NW_024599816.1 Primary Assembly 32633 na scaffold_231 unplaced-scaffold na na JAEVFA010000099.1 = NW_024599817.1 Primary Assembly 32014 na scaffold_244 unplaced-scaffold na na JAEVFA010000100.1 = NW_024599818.1 Primary Assembly 158241 na scaffold_329 unplaced-scaffold na na JAEVFA010000101.1 = NW_024599819.1 Primary Assembly 140596 na scaffold_345 unplaced-scaffold na na JAEVFA010000102.1 = NW_024599820.1 Primary Assembly 45054 na scaffold_384 unplaced-scaffold na na JAEVFA010000103.1 = NW_024599821.1 Primary Assembly 9784 na scaffold_403 unplaced-scaffold na na JAEVFA010000104.1 = NW_024599822.1 Primary Assembly 62788 na scaffold_487 unplaced-scaffold na na JAEVFA010000105.1 = NW_024599823.1 Primary Assembly 120045 na scaffold_582 unplaced-scaffold na na JAEVFA010000106.1 = NW_024599824.1 Primary Assembly 113809 na scaffold_801 unplaced-scaffold na na JAEVFA010000107.1 = NW_024599825.1 Primary Assembly 98739 na scaffold_83 unplaced-scaffold na na JAEVFA010000108.1 = NW_024599826.1 Primary Assembly 1916539 na scaffold_85 unplaced-scaffold na na JAEVFA010000109.1 = NW_024599827.1 Primary Assembly 1776320 na scaffold_87 unplaced-scaffold na na JAEVFA010000110.1 = NW_024599828.1 Primary Assembly 1554126 na scaffold_90 unplaced-scaffold na na JAEVFA010000111.1 = NW_024599829.1 Primary Assembly 940216 na scaffold_945 unplaced-scaffold na na JAEVFA010000112.1 = NW_024599830.1 Primary Assembly 87838 na scaffold_946 unplaced-scaffold na na JAEVFA010000113.1 = NW_024599831.1 Primary Assembly 88990 na scaffold_961 unplaced-scaffold na na JAEVFA010000114.1 = NW_024599832.1 Primary Assembly 86873 na tig00396862 assembled-molecule MT Mitochondrion CM028731.1 <> na non-nuclear 16617 na MT assembled-molecule MT Mitochondrion na <> NC_001941.1 non-nuclear 16616 chrM