# Assembly name: fMelBoe1.pri # Organism name: Melanotaenia boesemani (Boeseman's rainbowfish) # Isolate: fMelBoe1 # Taxid: 1250792 # BioSample: SAMN12623618 # BioProject: PRJNA561965 # Submitter: Vertebrate Genomes Project # Date: 2021-03-30 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAGFVI01 # Assembly method: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-12; VGP assembly pipeline v. 1.6 # Expected final version: no # Genome coverage: 60.0x # Sequencing technology: PacBio Sequel CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_017639745.1 # RefSeq assembly accession: GCF_017639745.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_017639755.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_017639765.1 GCF_017639765.1 Primary Assembly ## GCA_017639775.1 GCF_018638255.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM030225.1 = NC_055682.1 Primary Assembly 44752309 na SUPER_2 assembled-molecule 2 Chromosome CM030226.1 = NC_055683.1 Primary Assembly 41708093 na SUPER_3 assembled-molecule 3 Chromosome CM030227.1 = NC_055684.1 Primary Assembly 41079705 na SUPER_4 assembled-molecule 4 Chromosome CM030228.1 = NC_055685.1 Primary Assembly 40591798 na SUPER_5 assembled-molecule 5 Chromosome CM030229.1 = NC_055686.1 Primary Assembly 39487013 na SUPER_6 assembled-molecule 6 Chromosome CM030230.1 = NC_055687.1 Primary Assembly 39467289 na SUPER_7 assembled-molecule 7 Chromosome CM030231.1 = NC_055688.1 Primary Assembly 39286078 na SUPER_8 assembled-molecule 8 Chromosome CM030232.1 = NC_055689.1 Primary Assembly 38212551 na SUPER_9 assembled-molecule 9 Chromosome CM030233.1 = NC_055690.1 Primary Assembly 38003748 na SUPER_10 assembled-molecule 10 Chromosome CM030234.1 = NC_055691.1 Primary Assembly 37933747 na SUPER_11 assembled-molecule 11 Chromosome CM030235.1 = NC_055692.1 Primary Assembly 37878235 na SUPER_12 assembled-molecule 12 Chromosome CM030236.1 = NC_055693.1 Primary Assembly 37374654 na SUPER_13 assembled-molecule 13 Chromosome CM030237.1 = NC_055694.1 Primary Assembly 36977950 na SUPER_14 assembled-molecule 14 Chromosome CM030238.1 = NC_055695.1 Primary Assembly 35463915 na SUPER_15 assembled-molecule 15 Chromosome CM030239.1 = NC_055696.1 Primary Assembly 35304873 na SUPER_16 assembled-molecule 16 Chromosome CM030240.1 = NC_055697.1 Primary Assembly 34710959 na SUPER_17 assembled-molecule 17 Chromosome CM030241.1 = NC_055698.1 Primary Assembly 34685522 na SUPER_18 assembled-molecule 18 Chromosome CM030242.1 = NC_055699.1 Primary Assembly 33715480 na SUPER_19 assembled-molecule 19 Chromosome CM030243.1 = NC_055700.1 Primary Assembly 31819648 na SUPER_20 assembled-molecule 20 Chromosome CM030244.1 = NC_055701.1 Primary Assembly 30782128 na SUPER_21 assembled-molecule 21 Chromosome CM030245.1 = NC_055702.1 Primary Assembly 30537004 na SUPER_22 assembled-molecule 22 Chromosome CM030246.1 = NC_055703.1 Primary Assembly 29426028 na SUPER_23 assembled-molecule 23 Chromosome CM030247.1 = NC_055704.1 Primary Assembly 27050739 na SUPER_24 assembled-molecule 24 Chromosome CM030248.1 = NC_055705.1 Primary Assembly 24494574 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JAGFVI010000002.1 = NW_024580581.1 Primary Assembly 39123 na SUPER_2_unloc_5 unlocalized-scaffold 2 Chromosome JAGFVI010000010.1 = NW_024580586.1 Primary Assembly 170602 na SUPER_2_unloc_6 unlocalized-scaffold 2 Chromosome JAGFVI010000011.1 = NW_024580587.1 Primary Assembly 166218 na SUPER_2_unloc_8 unlocalized-scaffold 2 Chromosome JAGFVI010000012.1 = NW_024580589.1 Primary Assembly 36300 na SUPER_2_unloc_7 unlocalized-scaffold 2 Chromosome JAGFVI010000013.1 = NW_024580588.1 Primary Assembly 85895 na SUPER_2_unloc_1 unlocalized-scaffold 2 Chromosome JAGFVI010000014.1 = NW_024580582.1 Primary Assembly 439038 na SUPER_2_unloc_2 unlocalized-scaffold 2 Chromosome JAGFVI010000015.1 = NW_024580583.1 Primary Assembly 431727 na SUPER_2_unloc_4 unlocalized-scaffold 2 Chromosome JAGFVI010000016.1 = NW_024580585.1 Primary Assembly 310010 na SUPER_2_unloc_3 unlocalized-scaffold 2 Chromosome JAGFVI010000017.1 = NW_024580584.1 Primary Assembly 355389 na S9xx1 unplaced-scaffold na na JAGFVI010000034.1 = NW_024580592.1 Primary Assembly 78278 na S9xx2 unplaced-scaffold na na JAGFVI010000035.1 = NW_024580593.1 Primary Assembly 33306 na S11xx1 unplaced-scaffold na na JAGFVI010000036.1 = NW_024580590.1 Primary Assembly 45481 na S9Exx1 unplaced-scaffold na na JAGFVI010000037.1 = NW_024580591.1 Primary Assembly 361674 na scaffold_208_ctg1 unplaced-scaffold na na JAGFVI010000038.1 = NW_024580634.1 Primary Assembly 19213 na scaffold_161_ctg1 unplaced-scaffold na na JAGFVI010000039.1 = NW_024580609.1 Primary Assembly 55766 na scaffold_193_ctg1 unplaced-scaffold na na JAGFVI010000040.1 = NW_024580623.1 Primary Assembly 30042 na scaffold_109_ctg1 unplaced-scaffold na na JAGFVI010000041.1 = NW_024580594.1 Primary Assembly 178020 na scaffold_126_multi unplaced-scaffold na na JAGFVI010000042.1 = NW_024580595.1 Primary Assembly 99778 na scaffold_128_ctg1 unplaced-scaffold na na JAGFVI010000043.1 = NW_024580596.1 Primary Assembly 92393 na scaffold_129_ctg1 unplaced-scaffold na na JAGFVI010000044.1 = NW_024580597.1 Primary Assembly 92807 na scaffold_132_ctg1 unplaced-scaffold na na JAGFVI010000045.1 = NW_024580598.1 Primary Assembly 90222 na scaffold_134_ctg1 unplaced-scaffold na na JAGFVI010000046.1 = NW_024580599.1 Primary Assembly 87095 na scaffold_141_ctg1 unplaced-scaffold na na JAGFVI010000047.1 = NW_024580600.1 Primary Assembly 74514 na scaffold_145_ctg1 unplaced-scaffold na na JAGFVI010000048.1 = NW_024580601.1 Primary Assembly 72585 na scaffold_146_ctg1 unplaced-scaffold na na JAGFVI010000049.1 = NW_024580602.1 Primary Assembly 70614 na scaffold_147_multi unplaced-scaffold na na JAGFVI010000050.1 = NW_024580603.1 Primary Assembly 70218 na scaffold_150_ctg1 unplaced-scaffold na na JAGFVI010000051.1 = NW_024580604.1 Primary Assembly 65462 na scaffold_155_ctg1 unplaced-scaffold na na JAGFVI010000052.1 = NW_024580605.1 Primary Assembly 60522 na scaffold_156_ctg1 unplaced-scaffold na na JAGFVI010000053.1 = NW_024580606.1 Primary Assembly 60154 na scaffold_158_ctg1 unplaced-scaffold na na JAGFVI010000054.1 = NW_024580607.1 Primary Assembly 57463 na scaffold_159_ctg1 unplaced-scaffold na na JAGFVI010000055.1 = NW_024580608.1 Primary Assembly 57121 na scaffold_165_ctg1 unplaced-scaffold na na JAGFVI010000056.1 = NW_024580610.1 Primary Assembly 53410 na scaffold_168_ctg1 unplaced-scaffold na na JAGFVI010000057.1 = NW_024580611.1 Primary Assembly 50632 na scaffold_169_ctg1 unplaced-scaffold na na JAGFVI010000058.1 = NW_024580612.1 Primary Assembly 49310 na scaffold_170_ctg1 unplaced-scaffold na na JAGFVI010000059.1 = NW_024580613.1 Primary Assembly 48770 na scaffold_173_ctg1 unplaced-scaffold na na JAGFVI010000060.1 = NW_024580614.1 Primary Assembly 47861 na scaffold_179_ctg1 unplaced-scaffold na na JAGFVI010000061.1 = NW_024580615.1 Primary Assembly 43786 na scaffold_181_ctg1 unplaced-scaffold na na JAGFVI010000062.1 = NW_024580616.1 Primary Assembly 41948 na scaffold_183_ctg1 unplaced-scaffold na na JAGFVI010000063.1 = NW_024580617.1 Primary Assembly 40541 na scaffold_185_ctg1 unplaced-scaffold na na JAGFVI010000064.1 = NW_024580618.1 Primary Assembly 39192 na scaffold_187_ctg1 unplaced-scaffold na na JAGFVI010000065.1 = NW_024580619.1 Primary Assembly 38349 na scaffold_189_ctg1 unplaced-scaffold na na JAGFVI010000066.1 = NW_024580620.1 Primary Assembly 33317 na scaffold_190_ctg1 unplaced-scaffold na na JAGFVI010000067.1 = NW_024580621.1 Primary Assembly 33253 na scaffold_192_ctg1 unplaced-scaffold na na JAGFVI010000068.1 = NW_024580622.1 Primary Assembly 31665 na scaffold_194_ctg1 unplaced-scaffold na na JAGFVI010000069.1 = NW_024580624.1 Primary Assembly 30034 na scaffold_196_ctg1 unplaced-scaffold na na JAGFVI010000070.1 = NW_024580625.1 Primary Assembly 26493 na scaffold_197_ctg1 unplaced-scaffold na na JAGFVI010000071.1 = NW_024580626.1 Primary Assembly 24615 na scaffold_198_ctg1 unplaced-scaffold na na JAGFVI010000072.1 = NW_024580627.1 Primary Assembly 24597 na scaffold_199_ctg1 unplaced-scaffold na na JAGFVI010000073.1 = NW_024580628.1 Primary Assembly 23317 na scaffold_200_ctg1 unplaced-scaffold na na JAGFVI010000074.1 = NW_024580629.1 Primary Assembly 23289 na scaffold_202_ctg1 unplaced-scaffold na na JAGFVI010000075.1 = NW_024580630.1 Primary Assembly 22933 na scaffold_203_ctg1 unplaced-scaffold na na JAGFVI010000076.1 = NW_024580631.1 Primary Assembly 22325 na scaffold_205_ctg1 unplaced-scaffold na na JAGFVI010000077.1 = NW_024580632.1 Primary Assembly 21314 na scaffold_207_ctg1 unplaced-scaffold na na JAGFVI010000078.1 = NW_024580633.1 Primary Assembly 20465 na scaffold_209_ctg1 unplaced-scaffold na na JAGFVI010000079.1 = NW_024580635.1 Primary Assembly 17392 na scaffold_210_ctg1 unplaced-scaffold na na JAGFVI010000080.1 = NW_024580636.1 Primary Assembly 17225 na scaffold_211_ctg1 unplaced-scaffold na na JAGFVI010000081.1 = NW_024580637.1 Primary Assembly 16329 na scaffold_212_ctg1 unplaced-scaffold na na JAGFVI010000082.1 = NW_024580638.1 Primary Assembly 15642 na scaffold_213_ctg1 unplaced-scaffold na na JAGFVI010000083.1 = NW_024580639.1 Primary Assembly 13815 na scaffold_214_ctg1 unplaced-scaffold na na JAGFVI010000084.1 = NW_024580640.1 Primary Assembly 13332 na scaffold_215_ctg1 unplaced-scaffold na na JAGFVI010000085.1 = NW_024580641.1 Primary Assembly 12988 na scaffold_216_ctg1 unplaced-scaffold na na JAGFVI010000086.1 = NW_024580642.1 Primary Assembly 10451 na scaffold_217_ctg1 unplaced-scaffold na na JAGFVI010000087.1 = NW_024580643.1 Primary Assembly 10195 na scaffold_218_ctg1 unplaced-scaffold na na JAGFVI010000088.1 = NW_024580644.1 Primary Assembly 8395 na scaffold_219_ctg1 unplaced-scaffold na na JAGFVI010000089.1 = NW_024580645.1 Primary Assembly 7984 na scaffold_220_ctg1 unplaced-scaffold na na JAGFVI010000090.1 = NW_024580646.1 Primary Assembly 5609 na scaffold_221_ctg1 unplaced-scaffold na na JAGFVI010000091.1 = NW_024580647.1 Primary Assembly 3247 na scaffold_222_ctg1 unplaced-scaffold na na JAGFVI010000092.1 = NW_024580648.1 Primary Assembly 874 na MT assembled-molecule MT Mitochondrion na <> NC_028208.1 non-nuclear 16493 na fMelBoe1_MT assembled-molecule MT Mitochondrion CM030249.1 <> na non-nuclear 16541 na