# Assembly name: fToxJac2.pri # Organism name: Toxotes jaculatrix (banded archerfish) # Isolate: fToxJac2 # Taxid: 941984 # BioSample: SAMN18445299 # BioProject: PRJNA717046 # Submitter: Vertebrate Genomes Project # Date: 2021-04-15 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAGIYR01 # Assembly method: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Assembly Polish v. SMRTLink7.0.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-05; VGP assembly pipeline v. 1.6 # Expected final version: no # Genome coverage: 60.0x # Sequencing technology: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Reference Genome # GenBank assembly accession: GCA_017976425.1 # RefSeq assembly accession: GCF_017976425.1 # RefSeq assembly and GenBank assemblies identical: yes # Linked assembly: GCA_017976295.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_017976435.1 GCF_017976435.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM030680.1 = NC_054394.1 Primary Assembly 32862146 na SUPER_2 assembled-molecule 2 Chromosome CM030681.1 = NC_054395.1 Primary Assembly 31067618 na SUPER_3 assembled-molecule 3 Chromosome CM030682.1 = NC_054396.1 Primary Assembly 30992779 na SUPER_4 assembled-molecule 4 Chromosome CM030683.1 = NC_054397.1 Primary Assembly 30857583 na SUPER_5 assembled-molecule 5 Chromosome CM030684.1 = NC_054398.1 Primary Assembly 30579152 na SUPER_6 assembled-molecule 6 Chromosome CM030685.1 = NC_054399.1 Primary Assembly 30449169 na SUPER_7 assembled-molecule 7 Chromosome CM030686.1 = NC_054400.1 Primary Assembly 29950362 na SUPER_8 assembled-molecule 8 Chromosome CM030687.1 = NC_054401.1 Primary Assembly 29772078 na SUPER_9 assembled-molecule 9 Chromosome CM030688.1 = NC_054402.1 Primary Assembly 29625875 na SUPER_10 assembled-molecule 10 Chromosome CM030689.1 = NC_054403.1 Primary Assembly 28774280 na SUPER_11 assembled-molecule 11 Chromosome CM030690.1 = NC_054404.1 Primary Assembly 26859436 na SUPER_12 assembled-molecule 12 Chromosome CM030691.1 = NC_054405.1 Primary Assembly 26782438 na SUPER_13 assembled-molecule 13 Chromosome CM030692.1 = NC_054406.1 Primary Assembly 26730524 na SUPER_14 assembled-molecule 14 Chromosome CM030693.1 = NC_054407.1 Primary Assembly 26269235 na SUPER_15 assembled-molecule 15 Chromosome CM030694.1 = NC_054408.1 Primary Assembly 26017954 na SUPER_16 assembled-molecule 16 Chromosome CM030695.1 = NC_054409.1 Primary Assembly 25570266 na SUPER_17 assembled-molecule 17 Chromosome CM030696.1 = NC_054410.1 Primary Assembly 23680149 na SUPER_18 assembled-molecule 18 Chromosome CM030697.1 = NC_054411.1 Primary Assembly 22361531 na SUPER_19 assembled-molecule 19 Chromosome CM030698.1 = NC_054412.1 Primary Assembly 21569381 na SUPER_20 assembled-molecule 20 Chromosome CM030699.1 = NC_054413.1 Primary Assembly 21218196 na SUPER_21 assembled-molecule 21 Chromosome CM030700.1 = NC_054414.1 Primary Assembly 20835952 na SUPER_22 assembled-molecule 22 Chromosome CM030701.1 = NC_054415.1 Primary Assembly 17231459 na SUPER_23 assembled-molecule 23 Chromosome CM030702.1 = NC_054416.1 Primary Assembly 15399638 na SUPER_24 assembled-molecule 24 Chromosome CM030703.1 = NC_054417.1 Primary Assembly 11761534 na scaffold_62_ctg1 unplaced-scaffold na na JAGIYR010000025.1 = NW_024469787.1 Primary Assembly 173888 na scaffold_64_ctg1 unplaced-scaffold na na JAGIYR010000026.1 = NW_024469788.1 Primary Assembly 147882 na scaffold_65_ctg1 unplaced-scaffold na na JAGIYR010000027.1 = NW_024469789.1 Primary Assembly 147182 na scaffold_69_ctg1 unplaced-scaffold na na JAGIYR010000028.1 = NW_024469790.1 Primary Assembly 129575 na scaffold_70_ctg1 unplaced-scaffold na na JAGIYR010000029.1 = NW_024469791.1 Primary Assembly 126017 na scaffold_71_ctg1 unplaced-scaffold na na JAGIYR010000030.1 = NW_024469792.1 Primary Assembly 119425 na scaffold_72_ctg1 unplaced-scaffold na na JAGIYR010000031.1 = NW_024469793.1 Primary Assembly 113965 na scaffold_73_ctg1 unplaced-scaffold na na JAGIYR010000032.1 = NW_024469794.1 Primary Assembly 106269 na scaffold_75_ctg1 unplaced-scaffold na na JAGIYR010000033.1 = NW_024469795.1 Primary Assembly 100007 na scaffold_76_ctg1 unplaced-scaffold na na JAGIYR010000034.1 = NW_024469796.1 Primary Assembly 92868 na scaffold_77_ctg1 unplaced-scaffold na na JAGIYR010000035.1 = NW_024469797.1 Primary Assembly 89851 na scaffold_78_ctg1 unplaced-scaffold na na JAGIYR010000036.1 = NW_024469798.1 Primary Assembly 85655 na scaffold_79_ctg1 unplaced-scaffold na na JAGIYR010000037.1 = NW_024469799.1 Primary Assembly 81963 na scaffold_80_ctg1 unplaced-scaffold na na JAGIYR010000038.1 = NW_024469800.1 Primary Assembly 78662 na scaffold_81_ctg1 unplaced-scaffold na na JAGIYR010000039.1 = NW_024469801.1 Primary Assembly 74724 na scaffold_82_ctg1 unplaced-scaffold na na JAGIYR010000040.1 = NW_024469802.1 Primary Assembly 73321 na scaffold_83_ctg1 unplaced-scaffold na na JAGIYR010000041.1 = NW_024469803.1 Primary Assembly 72003 na scaffold_84_ctg1 unplaced-scaffold na na JAGIYR010000042.1 = NW_024469804.1 Primary Assembly 65409 na scaffold_85_ctg1 unplaced-scaffold na na JAGIYR010000043.1 = NW_024469805.1 Primary Assembly 63723 na scaffold_86_ctg1 unplaced-scaffold na na JAGIYR010000044.1 = NW_024469806.1 Primary Assembly 63712 na scaffold_87_ctg1 unplaced-scaffold na na JAGIYR010000045.1 = NW_024469807.1 Primary Assembly 62442 na scaffold_88_ctg1 unplaced-scaffold na na JAGIYR010000046.1 = NW_024469808.1 Primary Assembly 62381 na scaffold_89_ctg1 unplaced-scaffold na na JAGIYR010000047.1 = NW_024469809.1 Primary Assembly 61727 na scaffold_90_ctg1 unplaced-scaffold na na JAGIYR010000048.1 = NW_024469810.1 Primary Assembly 60730 na scaffold_91_ctg1 unplaced-scaffold na na JAGIYR010000049.1 = NW_024469811.1 Primary Assembly 59272 na scaffold_92_ctg1 unplaced-scaffold na na JAGIYR010000050.1 = NW_024469812.1 Primary Assembly 59219 na scaffold_93_ctg1 unplaced-scaffold na na JAGIYR010000051.1 = NW_024469813.1 Primary Assembly 59190 na scaffold_94_ctg1 unplaced-scaffold na na JAGIYR010000052.1 = NW_024469814.1 Primary Assembly 59155 na scaffold_95_ctg1 unplaced-scaffold na na JAGIYR010000053.1 = NW_024469815.1 Primary Assembly 58639 na scaffold_96_ctg1 unplaced-scaffold na na JAGIYR010000054.1 = NW_024469816.1 Primary Assembly 57780 na scaffold_98_ctg1 unplaced-scaffold na na JAGIYR010000055.1 = NW_024469817.1 Primary Assembly 55576 na scaffold_99_ctg1 unplaced-scaffold na na JAGIYR010000056.1 = NW_024469818.1 Primary Assembly 54542 na scaffold_100_ctg1 unplaced-scaffold na na JAGIYR010000057.1 = NW_024469747.1 Primary Assembly 54215 na scaffold_101_ctg1 unplaced-scaffold na na JAGIYR010000058.1 = NW_024469748.1 Primary Assembly 53253 na scaffold_102_ctg1 unplaced-scaffold na na JAGIYR010000059.1 = NW_024469749.1 Primary Assembly 52186 na scaffold_103_ctg1 unplaced-scaffold na na JAGIYR010000060.1 = NW_024469750.1 Primary Assembly 51051 na scaffold_104_ctg1 unplaced-scaffold na na JAGIYR010000061.1 = NW_024469751.1 Primary Assembly 50319 na scaffold_105_ctg1 unplaced-scaffold na na JAGIYR010000062.1 = NW_024469752.1 Primary Assembly 50214 na scaffold_106_ctg1 unplaced-scaffold na na JAGIYR010000063.1 = NW_024469753.1 Primary Assembly 50181 na scaffold_107_ctg1 unplaced-scaffold na na JAGIYR010000064.1 = NW_024469754.1 Primary Assembly 49538 na scaffold_108_ctg1 unplaced-scaffold na na JAGIYR010000065.1 = NW_024469755.1 Primary Assembly 48727 na scaffold_109_ctg1 unplaced-scaffold na na JAGIYR010000066.1 = NW_024469756.1 Primary Assembly 48538 na scaffold_110_ctg1 unplaced-scaffold na na JAGIYR010000067.1 = NW_024469757.1 Primary Assembly 48295 na scaffold_111_ctg1 unplaced-scaffold na na JAGIYR010000068.1 = NW_024469758.1 Primary Assembly 47104 na scaffold_112_ctg1a unplaced-scaffold na na JAGIYR010000069.1 = NW_024469759.1 Primary Assembly 29974 na scaffold_113_ctg1 unplaced-scaffold na na JAGIYR010000070.1 = NW_024469760.1 Primary Assembly 45095 na scaffold_115_ctg1 unplaced-scaffold na na JAGIYR010000071.1 = NW_024469761.1 Primary Assembly 43428 na scaffold_116_ctg1 unplaced-scaffold na na JAGIYR010000072.1 = NW_024469762.1 Primary Assembly 42491 na scaffold_117_ctg1 unplaced-scaffold na na JAGIYR010000073.1 = NW_024469763.1 Primary Assembly 41971 na scaffold_118_ctg1 unplaced-scaffold na na JAGIYR010000074.1 = NW_024469764.1 Primary Assembly 41843 na scaffold_119_ctg1 unplaced-scaffold na na JAGIYR010000075.1 = NW_024469765.1 Primary Assembly 41419 na scaffold_120_ctg1 unplaced-scaffold na na JAGIYR010000076.1 = NW_024469766.1 Primary Assembly 40703 na scaffold_121_ctg1 unplaced-scaffold na na JAGIYR010000077.1 = NW_024469767.1 Primary Assembly 39206 na scaffold_122_ctg1 unplaced-scaffold na na JAGIYR010000078.1 = NW_024469768.1 Primary Assembly 37940 na scaffold_123_ctg1 unplaced-scaffold na na JAGIYR010000079.1 = NW_024469769.1 Primary Assembly 37777 na scaffold_124_ctg1 unplaced-scaffold na na JAGIYR010000080.1 = NW_024469770.1 Primary Assembly 37405 na scaffold_126_ctg1 unplaced-scaffold na na JAGIYR010000081.1 = NW_024469771.1 Primary Assembly 36400 na scaffold_127_ctg1 unplaced-scaffold na na JAGIYR010000082.1 = NW_024469772.1 Primary Assembly 35669 na scaffold_128_ctg1 unplaced-scaffold na na JAGIYR010000083.1 = NW_024469773.1 Primary Assembly 34516 na scaffold_129_ctg1 unplaced-scaffold na na JAGIYR010000084.1 = NW_024469774.1 Primary Assembly 34113 na scaffold_130_ctg1 unplaced-scaffold na na JAGIYR010000085.1 = NW_024469775.1 Primary Assembly 33702 na scaffold_131_ctg1 unplaced-scaffold na na JAGIYR010000086.1 = NW_024469776.1 Primary Assembly 33568 na scaffold_132_ctg1 unplaced-scaffold na na JAGIYR010000087.1 = NW_024469777.1 Primary Assembly 31722 na scaffold_133_ctg1 unplaced-scaffold na na JAGIYR010000088.1 = NW_024469778.1 Primary Assembly 30532 na scaffold_134_ctg1 unplaced-scaffold na na JAGIYR010000089.1 = NW_024469779.1 Primary Assembly 30485 na scaffold_135_ctg1 unplaced-scaffold na na JAGIYR010000090.1 = NW_024469780.1 Primary Assembly 28959 na scaffold_136_ctg1 unplaced-scaffold na na JAGIYR010000091.1 = NW_024469781.1 Primary Assembly 28108 na scaffold_137_ctg1 unplaced-scaffold na na JAGIYR010000092.1 = NW_024469782.1 Primary Assembly 27986 na scaffold_138_ctg1 unplaced-scaffold na na JAGIYR010000093.1 = NW_024469783.1 Primary Assembly 26591 na scaffold_139_ctg1 unplaced-scaffold na na JAGIYR010000094.1 = NW_024469784.1 Primary Assembly 25165 na scaffold_140_ctg1 unplaced-scaffold na na JAGIYR010000095.1 = NW_024469785.1 Primary Assembly 24831 na scaffold_141_ctg1 unplaced-scaffold na na JAGIYR010000096.1 = NW_024469786.1 Primary Assembly 22722 na