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html/GCF_018350175.1_F.catus_Fca126_mat1.0.repeatMasker track repeatModeler shortLabel RepeatModeler longLabel RepeatModeler Repetitive Elements type bigRmsk 9 + visibility hide group varRep bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.rModel.bb xrefDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.rModel.align.bb maxWindowToDraw 5000000 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.repeatModeler track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.simpleRepeat.bb html html/GCF_018350175.1_F.catus_Fca126_mat1.0.simpleRepeat track refSeqComposite compositeTrack on shortLabel NCBI RefSeq longLabel RefSeq gene predictions from NCBI group genes visibility pack type bigBed dragAndDrop subTracks allButtonPair on dataVersion NCBI Felis catus Annotation Release 105 (2021-11-10) html html/GCF_018350175.1_F.catus_Fca126_mat1.0.refSeqComposite priority 2 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bigPsl searchIndex name bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.bigPsl.bb indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsMaxZoom 10000.0 showCdsAllScales . baseColorDefault diffCodons pslSequence no baseColorUseSequence lfExtra baseColorUseCds table given color 0,0,0 track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility dense type bigBed 4 + html html/GCF_018350175.1_F.catus_Fca126_mat1.0.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.windowMasker.bb html html/GCF_018350175.1_F.catus_Fca126_mat1.0.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility hide type bigBed 3 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.allGaps.bb html html/GCF_018350175.1_F.catus_Fca126_mat1.0.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility dense color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.augustus.bb html html/GCF_018350175.1_F.catus_Fca126_mat1.0.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type 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GCF_018350175.1_F.catus_Fca126_mat1.0ChainNet spectrum on track GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewRBest shortLabel Reciprocal best view rbest visibility hide parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNet spectrum on track GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewLiftOver shortLabel Lift over view liftover visibility hide parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNet spectrum on track chainGCF_000181335.3 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewchain on subGroups view=chain species=s000 chainType=c00 shortLabel domestic cat Chain longLabel domestic cat/GCF_000181335.3_Felis_catus_9.0 (2017-11-20) Chained Alignments type bigChain GCF_000181335.3 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainGCF_000181335.3.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainGCF_000181335.3Link.bb otherDb GCF_000181335.3 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 0.734 track chainSynGCF_000181335.3 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewSynTen off subGroups view=synten species=s000 chainType=c01 shortLabel domestic cat synChain longLabel domestic cat/GCF_000181335.3_Felis_catus_9.0 (2017-11-20) Chained Alignments type bigChain GCF_000181335.3 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainSynGCF_000181335.3.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainSynGCF_000181335.3Link.bb otherDb GCF_000181335.3 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 0.734 track chainRBestGCF_000181335.3 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewRBest off subGroups view=rbest species=s000 chainType=c02 shortLabel domestic cat rbChain longLabel domestic cat/GCF_000181335.3_Felis_catus_9.0 (2017-11-20) Chained Alignments type bigChain GCF_000181335.3 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainRBestGCF_000181335.3.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainRBestGCF_000181335.3Link.bb otherDb GCF_000181335.3 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 0.734 track chainLiftOverGCF_000181335.3 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewLiftOver off subGroups view=liftover species=s000 chainType=c03 shortLabel domestic cat loChain longLabel domestic cat/GCF_000181335.3_Felis_catus_9.0 (2017-11-20) Chained Alignments type bigChain GCF_000181335.3 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainLiftOverGCF_000181335.3.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainLiftOverGCF_000181335.3Link.bb otherDb GCF_000181335.3 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 0.734 track chainFelCat8 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewchain off subGroups view=chain species=s001 chainType=c00 shortLabel Cat/felCat8 Chain longLabel Cat/felCat8/felCat8 (Nov. 2014) Chained Alignments type bigChain felCat8 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainFelCat8.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainFelCat8Link.bb otherDb felCat8 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 1.255 track chainSynFelCat8 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewSynTen off subGroups view=synten species=s001 chainType=c01 shortLabel Cat/felCat8 synChain longLabel Cat/felCat8/felCat8 (Nov. 2014) Chained Alignments type bigChain felCat8 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainSynFelCat8.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainSynFelCat8Link.bb otherDb felCat8 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 1.255 track chainRBestFelCat8 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewRBest off subGroups view=rbest species=s001 chainType=c02 shortLabel Cat/felCat8 rbChain longLabel Cat/felCat8/felCat8 (Nov. 2014) Chained Alignments type bigChain felCat8 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainRBestFelCat8.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainRBestFelCat8Link.bb otherDb felCat8 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 1.255 track chainLiftOverFelCat8 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewLiftOver off subGroups view=liftover species=s001 chainType=c03 shortLabel Cat/felCat8 loChain longLabel Cat/felCat8/felCat8 (Nov. 2014) Chained Alignments type bigChain felCat8 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainLiftOverFelCat8.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainLiftOverFelCat8Link.bb otherDb felCat8 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 1.255 track chainHg38 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewchain off subGroups view=chain species=s002 chainType=c00 shortLabel Human/hg38 Chain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainHg38.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainHg38Link.bb otherDb hg38 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 38.778 track chainSynHg38 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewSynTen off subGroups view=synten species=s002 chainType=c01 shortLabel Human/hg38 synChain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainSynHg38.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainSynHg38Link.bb otherDb hg38 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 38.778 track chainRBestHg38 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewRBest off subGroups view=rbest species=s002 chainType=c02 shortLabel Human/hg38 rbChain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainRBestHg38.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainRBestHg38Link.bb otherDb hg38 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 38.778 track chainLiftOverHg38 parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNetViewLiftOver off subGroups view=liftover species=s002 chainType=c03 shortLabel Human/hg38 loChain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainLiftOverHg38.bb linkDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.chainLiftOverHg38Link.bb otherDb hg38 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 38.778 track GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet shortLabel Nets view align visibility hide parent GCF_018350175.1_F.catus_Fca126_mat1.0ChainNet track netGCF_000181335.3 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s000 chainType=c04 shortLabel domestic cat mafNet longLabel domestic cat/GCF_000181335.3_Felis_catus_9.0 (2017-11-20) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.GCF_000181335.3.net.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.GCF_000181335.3.net.summary.bb speciesOrder GCF_000181335.3 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 0.734 track synNetGCF_000181335.3 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s000 chainType=c05 shortLabel domestic cat synNet longLabel domestic cat/GCF_000181335.3_Felis_catus_9.0 (2017-11-20) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.GCF_000181335.3.synNet.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.GCF_000181335.3.synNet.summary.bb speciesOrder GCF_000181335.3 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 0.734 track rbestNetGCF_000181335.3 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s000 chainType=c06 shortLabel domestic cat rbestNet longLabel domestic cat/GCF_000181335.3_Felis_catus_9.0 (2017-11-20) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.GCF_000181335.3.rbestNet.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.GCF_000181335.3.rbestNet.summary.bb speciesOrder GCF_000181335.3 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 0.734 track netFelCat8 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s001 chainType=c04 shortLabel Cat/felCat8 mafNet longLabel Cat/felCat8/felCat8 (Nov. 2014) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.felCat8.net.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.felCat8.net.summary.bb speciesOrder felCat8 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 1.255 track synNetFelCat8 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s001 chainType=c05 shortLabel Cat/felCat8 synNet longLabel Cat/felCat8/felCat8 (Nov. 2014) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.felCat8.synNet.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.felCat8.synNet.summary.bb speciesOrder felCat8 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 1.255 track rbestNetFelCat8 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s001 chainType=c06 shortLabel Cat/felCat8 rbestNet longLabel Cat/felCat8/felCat8 (Nov. 2014) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.felCat8.rbestNet.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.felCat8.rbestNet.summary.bb speciesOrder felCat8 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 1.255 track netHg38 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s002 chainType=c04 shortLabel Human/hg38 mafNet longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.hg38.net.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.hg38.net.summary.bb speciesOrder hg38 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 38.778 track synNetHg38 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s002 chainType=c05 shortLabel Human/hg38 synNet longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.hg38.synNet.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.hg38.synNet.summary.bb speciesOrder hg38 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 38.778 track rbestNetHg38 parent GCF_018350175.1_F.catus_Fca126_mat1.0MafNetViewnet off subGroups view=align species=s002 chainType=c06 shortLabel Human/hg38 rbestNet longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigMaf bigDataUrl bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.hg38.rbestNet.bb summary bbi/GCF_018350175.1_F.catus_Fca126_mat1.0.hg38.rbestNet.summary.bb speciesOrder hg38 html html/GCF_018350175.1_F.catus_Fca126_mat1.0.chainNet priority 38.778