# Assembly name: fAloSap1.pri # Organism name: Alosa sapidissima (American shad) # Isolate: fAloSap1 # Sex: male # Taxid: 34773 # BioSample: SAMN18857608 # BioProject: PRJNA728145 # Submitter: Vertebrate Genomes Project # Date: 2021-05-25 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAHDTN01 # Assembly method: Hifisam v. 0.14; Purge_dups v. 1.0.1; Salsa v. 2.2; Scaff10X v. 3.2.1; Bionano Solve v. 3.6.1; VGP pipeline v. 2.0; gEVAL manual curation v. 2021-04-21 # Expected final version: no # Genome coverage: 33.0x # Sequencing technology: PacBio Sequel II HiFi; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_018492685.1 # RefSeq assembly accession: GCF_018492685.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_018492705.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_018492695.1 GCF_018492695.1 Primary Assembly ## GCF_018788245.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM031716.1 = NC_055957.1 Primary Assembly 56504578 na SUPER_2 assembled-molecule 2 Chromosome CM031717.1 = NC_055958.1 Primary Assembly 44392265 na SUPER_3 assembled-molecule 3 Chromosome CM031718.1 = NC_055959.1 Primary Assembly 41744500 na SUPER_4 assembled-molecule 4 Chromosome CM031719.1 = NC_055960.1 Primary Assembly 40364483 na SUPER_5 assembled-molecule 5 Chromosome CM031720.1 = NC_055961.1 Primary Assembly 40211269 na SUPER_6 assembled-molecule 6 Chromosome CM031721.1 = NC_055962.1 Primary Assembly 39814911 na SUPER_7 assembled-molecule 7 Chromosome CM031722.1 = NC_055963.1 Primary Assembly 39350476 na SUPER_8 assembled-molecule 8 Chromosome CM031723.1 = NC_055964.1 Primary Assembly 38912301 na SUPER_9 assembled-molecule 9 Chromosome CM031724.1 = NC_055965.1 Primary Assembly 38593806 na SUPER_10 assembled-molecule 10 Chromosome CM031725.1 = NC_055966.1 Primary Assembly 38583819 na SUPER_11 assembled-molecule 11 Chromosome CM031726.1 = NC_055967.1 Primary Assembly 38440066 na SUPER_12 assembled-molecule 12 Chromosome CM031727.1 = NC_055968.1 Primary Assembly 38278902 na SUPER_13 assembled-molecule 13 Chromosome CM031728.1 = NC_055969.1 Primary Assembly 37159020 na SUPER_14 assembled-molecule 14 Chromosome CM031729.1 = NC_055970.1 Primary Assembly 36832652 na SUPER_15 assembled-molecule 15 Chromosome CM031730.1 = NC_055971.1 Primary Assembly 35536770 na SUPER_16 assembled-molecule 16 Chromosome CM031731.1 = NC_055972.1 Primary Assembly 35201806 na SUPER_17 assembled-molecule 17 Chromosome CM031732.1 = NC_055973.1 Primary Assembly 34941941 na SUPER_18 assembled-molecule 18 Chromosome CM031733.1 = NC_055974.1 Primary Assembly 32793614 na SUPER_19 assembled-molecule 19 Chromosome CM031734.1 = NC_055975.1 Primary Assembly 32206363 na SUPER_20 assembled-molecule 20 Chromosome CM031735.1 = NC_055976.1 Primary Assembly 32252668 na SUPER_21 assembled-molecule 21 Chromosome CM031736.1 = NC_055977.1 Primary Assembly 32081259 na SUPER_22 assembled-molecule 22 Chromosome CM031737.1 = NC_055978.1 Primary Assembly 31742902 na SUPER_23 assembled-molecule 23 Chromosome CM031738.1 = NC_055979.1 Primary Assembly 31227213 na SUPER_24 assembled-molecule 24 Chromosome CM031739.1 = NC_055980.1 Primary Assembly 30811943 na SUPER_6_unloc_1 unlocalized-scaffold 6 Chromosome JAHDTN010000021.1 = NW_024582116.1 Primary Assembly 22192 na SUPER_19_unloc_1 unlocalized-scaffold 19 Chromosome JAHDTN010000028.1 = NW_024582117.1 Primary Assembly 295807 na SUPER_24_unloc_1 unlocalized-scaffold 24 Chromosome JAHDTN010000024.1 = NW_024582118.1 Primary Assembly 49702 na SUPER_24_unloc_2 unlocalized-scaffold 24 Chromosome JAHDTN010000025.1 = NW_024582119.1 Primary Assembly 32330 na scaffold_48_ctg1 unplaced-scaffold na na JAHDTN010000029.1 = NW_024582142.1 Primary Assembly 403292 na scaffold_51_ctg1 unplaced-scaffold na na JAHDTN010000030.1 = NW_024582148.1 Primary Assembly 375854 na scaffold_52_multi unplaced-scaffold na na JAHDTN010000031.1 = NW_024582154.1 Primary Assembly 375752 na scaffold_55_ctg1 unplaced-scaffold na na JAHDTN010000032.1 = NW_024582155.1 Primary Assembly 311703 na scaffold_60_ctg1 unplaced-scaffold na na JAHDTN010000033.1 = NW_024582156.1 Primary Assembly 269695 na scaffold_61_multi unplaced-scaffold na na JAHDTN010000034.1 = NW_024582157.1 Primary Assembly 269301 na scaffold_62_ctg1 unplaced-scaffold na na JAHDTN010000035.1 = NW_024582158.1 Primary Assembly 266092 na scaffold_65_ctg1 unplaced-scaffold na na JAHDTN010000036.1 = NW_024582159.1 Primary Assembly 251813 na scaffold_69_ctg1 unplaced-scaffold na na JAHDTN010000037.1 = NW_024582160.1 Primary Assembly 233926 na scaffold_73_ctg1 unplaced-scaffold na na JAHDTN010000038.1 = NW_024582161.1 Primary Assembly 225682 na scaffold_77_ctg1 unplaced-scaffold na na JAHDTN010000039.1 = NW_024582162.1 Primary Assembly 218598 na scaffold_82_ctg1 unplaced-scaffold na na JAHDTN010000040.1 = NW_024582163.1 Primary Assembly 197639 na scaffold_91_ctg1 unplaced-scaffold na na JAHDTN010000041.1 = NW_024582164.1 Primary Assembly 184372 na scaffold_102_ctg1 unplaced-scaffold na na JAHDTN010000042.1 = NW_024582120.1 Primary Assembly 165757 na scaffold_103_ctg1 unplaced-scaffold na na JAHDTN010000043.1 = NW_024582121.1 Primary Assembly 165182 na scaffold_106_ctg1 unplaced-scaffold na na JAHDTN010000044.1 = NW_024582122.1 Primary Assembly 160283 na scaffold_109_ctg1 unplaced-scaffold na na JAHDTN010000045.1 = NW_024582123.1 Primary Assembly 153101 na scaffold_125_ctg1 unplaced-scaffold na na JAHDTN010000046.1 = NW_024582124.1 Primary Assembly 136442 na scaffold_157_ctg1 unplaced-scaffold na na JAHDTN010000047.1 = NW_024582125.1 Primary Assembly 101966 na scaffold_179_ctg1 unplaced-scaffold na na JAHDTN010000048.1 = NW_024582126.1 Primary Assembly 90783 na scaffold_258_ctg1 unplaced-scaffold na na JAHDTN010000049.1 = NW_024582127.1 Primary Assembly 61195 na scaffold_293_ctg1 unplaced-scaffold na na JAHDTN010000050.1 = NW_024582128.1 Primary Assembly 49942 na scaffold_299_ctg1 unplaced-scaffold na na JAHDTN010000051.1 = NW_024582129.1 Primary Assembly 48894 na scaffold_371_ctg1 unplaced-scaffold na na JAHDTN010000052.1 = NW_024582130.1 Primary Assembly 34726 na scaffold_385_ctg1 unplaced-scaffold na na JAHDTN010000053.1 = NW_024582131.1 Primary Assembly 32711 na scaffold_398_ctg1 unplaced-scaffold na na JAHDTN010000054.1 = NW_024582132.1 Primary Assembly 31232 na scaffold_403_ctg1 unplaced-scaffold na na JAHDTN010000055.1 = NW_024582133.1 Primary Assembly 30872 na scaffold_420_ctg1 unplaced-scaffold na na JAHDTN010000056.1 = NW_024582134.1 Primary Assembly 28555 na scaffold_425_ctg1 unplaced-scaffold na na JAHDTN010000057.1 = NW_024582135.1 Primary Assembly 26883 na scaffold_430_ctg1 unplaced-scaffold na na JAHDTN010000058.1 = NW_024582136.1 Primary Assembly 26475 na scaffold_441_ctg1 unplaced-scaffold na na JAHDTN010000059.1 = NW_024582137.1 Primary Assembly 25366 na scaffold_459_ctg1 unplaced-scaffold na na JAHDTN010000060.1 = NW_024582138.1 Primary Assembly 23797 na scaffold_460_ctg1 unplaced-scaffold na na JAHDTN010000061.1 = NW_024582139.1 Primary Assembly 23679 na scaffold_483_ctg1 unplaced-scaffold na na JAHDTN010000062.1 = NW_024582140.1 Primary Assembly 21437 na scaffold_487_ctg1 unplaced-scaffold na na JAHDTN010000063.1 = NW_024582141.1 Primary Assembly 21148 na scaffold_492_ctg1 unplaced-scaffold na na JAHDTN010000064.1 = NW_024582143.1 Primary Assembly 20263 na scaffold_494_ctg1 unplaced-scaffold na na JAHDTN010000065.1 = NW_024582144.1 Primary Assembly 19870 na scaffold_501_ctg1 unplaced-scaffold na na JAHDTN010000066.1 = NW_024582145.1 Primary Assembly 18798 na scaffold_510_ctg1 unplaced-scaffold na na JAHDTN010000067.1 = NW_024582146.1 Primary Assembly 16842 na scaffold_514_ctg1 unplaced-scaffold na na JAHDTN010000068.1 = NW_024582147.1 Primary Assembly 16283 na scaffold_520_ctg1 unplaced-scaffold na na JAHDTN010000069.1 = NW_024582149.1 Primary Assembly 14855 na scaffold_524_ctg1 unplaced-scaffold na na JAHDTN010000070.1 = NW_024582150.1 Primary Assembly 12808 na scaffold_527_ctg1 unplaced-scaffold na na JAHDTN010000071.1 = NW_024582151.1 Primary Assembly 11095 na scaffold_528_ctg1 unplaced-scaffold na na JAHDTN010000072.1 = NW_024582152.1 Primary Assembly 8054 na scaffold_529_ctg1 unplaced-scaffold na na JAHDTN010000073.1 = NW_024582153.1 Primary Assembly 2376 na MT assembled-molecule MT Mitochondrion na <> NC_014690.1 non-nuclear 16697 na