# Assembly name: ASM1855543v2 # Organism name: Bifidobacterium amazonense (high G+C Gram-positive bacteria) # Infraspecific name: strain=MA1 # Taxid: 2809027 # BioSample: SAMN17736106 # BioProject: PRJNA698773 # Submitter: University of Parma # Date: 2022-03-15 # Assembly type: na # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAFEJT02 # Assembly method: SPAdes v. v3.14 # Expected final version: yes # Genome coverage: 92.0x # Sequencing technology: Illumina MiSeq # Relation to type material: assembly from type material # RefSeq category: Reference Genome # GenBank assembly accession: GCA_018555435.2 # RefSeq assembly accession: GCF_018555435.2 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_018555445.2 GCF_018555445.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Contig_001 unplaced-scaffold na na JAFEJT020000001.1 = NZ_JAFEJT020000001.1 Primary Assembly 164649 na Contig_002 unplaced-scaffold na na JAFEJT020000002.1 = NZ_JAFEJT020000002.1 Primary Assembly 125406 na Contig_003 unplaced-scaffold na na JAFEJT020000003.1 = NZ_JAFEJT020000003.1 Primary Assembly 98272 na Contig_004 unplaced-scaffold na na JAFEJT020000004.1 = NZ_JAFEJT020000004.1 Primary Assembly 96405 na Contig_005 unplaced-scaffold na na JAFEJT020000005.1 = NZ_JAFEJT020000005.1 Primary Assembly 90339 na Contig_006 unplaced-scaffold na na JAFEJT020000006.1 = NZ_JAFEJT020000006.1 Primary Assembly 90083 na Contig_007 unplaced-scaffold na na JAFEJT020000007.1 = NZ_JAFEJT020000007.1 Primary Assembly 85812 na Contig_008 unplaced-scaffold na na JAFEJT020000008.1 = NZ_JAFEJT020000008.1 Primary Assembly 82998 na Contig_009 unplaced-scaffold na na JAFEJT020000009.1 = NZ_JAFEJT020000009.1 Primary Assembly 79625 na Contig_010 unplaced-scaffold na na JAFEJT020000010.1 = NZ_JAFEJT020000010.1 Primary Assembly 73377 na Contig_011 unplaced-scaffold na na JAFEJT020000011.1 = NZ_JAFEJT020000011.1 Primary Assembly 67568 na Contig_012 unplaced-scaffold na na JAFEJT020000012.1 = NZ_JAFEJT020000012.1 Primary Assembly 67057 na Contig_013 unplaced-scaffold na na JAFEJT020000013.1 = NZ_JAFEJT020000013.1 Primary Assembly 64981 na Contig_014 unplaced-scaffold na na JAFEJT020000014.1 = NZ_JAFEJT020000014.1 Primary Assembly 61334 na Contig_015 unplaced-scaffold na na JAFEJT020000015.1 = NZ_JAFEJT020000015.1 Primary Assembly 56139 na Contig_016 unplaced-scaffold na na JAFEJT020000016.1 = NZ_JAFEJT020000016.1 Primary Assembly 53099 na Contig_017 unplaced-scaffold na na JAFEJT020000017.1 = NZ_JAFEJT020000017.1 Primary Assembly 51370 na Contig_018 unplaced-scaffold na na JAFEJT020000018.1 = NZ_JAFEJT020000018.1 Primary Assembly 51095 na Contig_019 unplaced-scaffold na na JAFEJT020000019.1 = NZ_JAFEJT020000019.1 Primary Assembly 50056 na Contig_020 unplaced-scaffold na na JAFEJT020000020.1 = NZ_JAFEJT020000020.1 Primary Assembly 49986 na Contig_021 unplaced-scaffold na na JAFEJT020000021.1 = NZ_JAFEJT020000021.1 Primary Assembly 47995 na Contig_022 unplaced-scaffold na na JAFEJT020000022.1 = NZ_JAFEJT020000022.1 Primary Assembly 44476 na Contig_023 unplaced-scaffold na na JAFEJT020000023.1 = NZ_JAFEJT020000023.1 Primary Assembly 43704 na Contig_024 unplaced-scaffold na na JAFEJT020000024.1 = NZ_JAFEJT020000024.1 Primary Assembly 43655 na Contig_025 unplaced-scaffold na na JAFEJT020000025.1 = NZ_JAFEJT020000025.1 Primary Assembly 42021 na Contig_026 unplaced-scaffold na na JAFEJT020000026.1 = NZ_JAFEJT020000026.1 Primary Assembly 41418 na Contig_027 unplaced-scaffold na na JAFEJT020000027.1 = NZ_JAFEJT020000027.1 Primary Assembly 38740 na Contig_028 unplaced-scaffold na na JAFEJT020000028.1 = NZ_JAFEJT020000028.1 Primary Assembly 37666 na Contig_029 unplaced-scaffold na na JAFEJT020000029.1 = NZ_JAFEJT020000029.1 Primary Assembly 37311 na Contig_030 unplaced-scaffold na na JAFEJT020000030.1 = NZ_JAFEJT020000030.1 Primary Assembly 37290 na Contig_031 unplaced-scaffold na na JAFEJT020000031.1 = NZ_JAFEJT020000031.1 Primary Assembly 36452 na Contig_032 unplaced-scaffold na na JAFEJT020000032.1 = NZ_JAFEJT020000032.1 Primary Assembly 35824 na Contig_033 unplaced-scaffold na na JAFEJT020000033.1 = NZ_JAFEJT020000033.1 Primary Assembly 34404 na Contig_034 unplaced-scaffold na na JAFEJT020000034.1 = NZ_JAFEJT020000034.1 Primary Assembly 34295 na Contig_035 unplaced-scaffold na na JAFEJT020000035.1 = NZ_JAFEJT020000035.1 Primary Assembly 32482 na Contig_036 unplaced-scaffold na na JAFEJT020000036.1 = NZ_JAFEJT020000036.1 Primary Assembly 32427 na Contig_037 unplaced-scaffold na na JAFEJT020000037.1 = NZ_JAFEJT020000037.1 Primary Assembly 32349 na Contig_038 unplaced-scaffold na na JAFEJT020000038.1 = NZ_JAFEJT020000038.1 Primary Assembly 31657 na Contig_039 unplaced-scaffold na na JAFEJT020000039.1 = NZ_JAFEJT020000039.1 Primary Assembly 31300 na Contig_040 unplaced-scaffold na na JAFEJT020000040.1 = NZ_JAFEJT020000040.1 Primary Assembly 31057 na Contig_041 unplaced-scaffold na na JAFEJT020000041.1 = NZ_JAFEJT020000041.1 Primary Assembly 30295 na Contig_042 unplaced-scaffold na na JAFEJT020000042.1 = NZ_JAFEJT020000042.1 Primary Assembly 28803 na Contig_043 unplaced-scaffold na na JAFEJT020000043.1 = NZ_JAFEJT020000043.1 Primary Assembly 27953 na Contig_044 unplaced-scaffold na na JAFEJT020000044.1 = NZ_JAFEJT020000044.1 Primary Assembly 27345 na Contig_045 unplaced-scaffold na na JAFEJT020000045.1 = NZ_JAFEJT020000045.1 Primary Assembly 26420 na Contig_046 unplaced-scaffold na na JAFEJT020000046.1 = NZ_JAFEJT020000046.1 Primary Assembly 25801 na Contig_047 unplaced-scaffold na na JAFEJT020000047.1 = NZ_JAFEJT020000047.1 Primary Assembly 25752 na Contig_048 unplaced-scaffold na na JAFEJT020000048.1 = NZ_JAFEJT020000048.1 Primary Assembly 25646 na Contig_049 unplaced-scaffold na na JAFEJT020000049.1 = NZ_JAFEJT020000049.1 Primary Assembly 25596 na Contig_050 unplaced-scaffold na na JAFEJT020000050.1 = NZ_JAFEJT020000050.1 Primary Assembly 25437 na Contig_051 unplaced-scaffold na na JAFEJT020000051.1 = NZ_JAFEJT020000051.1 Primary Assembly 24348 na Contig_052 unplaced-scaffold na na JAFEJT020000052.1 = NZ_JAFEJT020000052.1 Primary Assembly 23965 na Contig_053 unplaced-scaffold na na JAFEJT020000053.1 = NZ_JAFEJT020000053.1 Primary Assembly 22821 na Contig_054 unplaced-scaffold na na JAFEJT020000054.1 = NZ_JAFEJT020000054.1 Primary Assembly 22567 na Contig_055 unplaced-scaffold na na JAFEJT020000055.1 = NZ_JAFEJT020000055.1 Primary Assembly 22074 na Contig_056 unplaced-scaffold na na JAFEJT020000056.1 = NZ_JAFEJT020000056.1 Primary Assembly 21091 na Contig_057 unplaced-scaffold na na JAFEJT020000057.1 = NZ_JAFEJT020000057.1 Primary Assembly 20107 na Contig_058 unplaced-scaffold na na JAFEJT020000058.1 = NZ_JAFEJT020000058.1 Primary Assembly 19838 na Contig_059 unplaced-scaffold na na JAFEJT020000059.1 = NZ_JAFEJT020000059.1 Primary Assembly 19379 na Contig_060 unplaced-scaffold na na JAFEJT020000060.1 = NZ_JAFEJT020000060.1 Primary Assembly 19378 na Contig_061 unplaced-scaffold na na JAFEJT020000061.1 = NZ_JAFEJT020000061.1 Primary Assembly 19253 na Contig_062 unplaced-scaffold na na JAFEJT020000062.1 = NZ_JAFEJT020000062.1 Primary Assembly 18305 na Contig_063 unplaced-scaffold na na JAFEJT020000063.1 = NZ_JAFEJT020000063.1 Primary Assembly 16822 na Contig_064 unplaced-scaffold na na JAFEJT020000064.1 = NZ_JAFEJT020000064.1 Primary Assembly 16807 na Contig_065 unplaced-scaffold na na JAFEJT020000065.1 = NZ_JAFEJT020000065.1 Primary Assembly 16541 na Contig_066 unplaced-scaffold na na JAFEJT020000066.1 = NZ_JAFEJT020000066.1 Primary Assembly 16153 na Contig_067 unplaced-scaffold na na JAFEJT020000067.1 = NZ_JAFEJT020000067.1 Primary Assembly 15812 na Contig_068 unplaced-scaffold na na JAFEJT020000068.1 = NZ_JAFEJT020000068.1 Primary Assembly 14925 na Contig_069 unplaced-scaffold na na JAFEJT020000069.1 = NZ_JAFEJT020000069.1 Primary Assembly 14824 na Contig_070 unplaced-scaffold na na JAFEJT020000070.1 = NZ_JAFEJT020000070.1 Primary Assembly 14809 na Contig_071 unplaced-scaffold na na JAFEJT020000071.1 = NZ_JAFEJT020000071.1 Primary Assembly 14289 na Contig_072 unplaced-scaffold na na JAFEJT020000072.1 = NZ_JAFEJT020000072.1 Primary Assembly 13839 na Contig_073 unplaced-scaffold na na JAFEJT020000073.1 = NZ_JAFEJT020000073.1 Primary Assembly 13411 na Contig_074 unplaced-scaffold na na JAFEJT020000074.1 = NZ_JAFEJT020000074.1 Primary Assembly 13406 na Contig_075 unplaced-scaffold na na JAFEJT020000075.1 = NZ_JAFEJT020000075.1 Primary Assembly 13374 na Contig_076 unplaced-scaffold na na JAFEJT020000076.1 = NZ_JAFEJT020000076.1 Primary Assembly 13305 na Contig_077 unplaced-scaffold na na JAFEJT020000077.1 = NZ_JAFEJT020000077.1 Primary Assembly 12775 na Contig_078 unplaced-scaffold na na JAFEJT020000078.1 = NZ_JAFEJT020000078.1 Primary Assembly 12523 na Contig_079 unplaced-scaffold na na JAFEJT020000079.1 = NZ_JAFEJT020000079.1 Primary Assembly 12314 na Contig_080 unplaced-scaffold na na JAFEJT020000080.1 = NZ_JAFEJT020000080.1 Primary Assembly 12253 na Contig_081 unplaced-scaffold na na JAFEJT020000081.1 = NZ_JAFEJT020000081.1 Primary Assembly 11833 na Contig_082 unplaced-scaffold na na JAFEJT020000082.1 = NZ_JAFEJT020000082.1 Primary Assembly 11276 na Contig_083 unplaced-scaffold na na JAFEJT020000083.1 = NZ_JAFEJT020000083.1 Primary Assembly 11254 na Contig_084 unplaced-scaffold na na JAFEJT020000084.1 = NZ_JAFEJT020000084.1 Primary Assembly 10881 na Contig_085 unplaced-scaffold na na JAFEJT020000085.1 = NZ_JAFEJT020000085.1 Primary Assembly 9780 na Contig_086 unplaced-scaffold na na JAFEJT020000086.1 = NZ_JAFEJT020000086.1 Primary Assembly 9558 na Contig_087 unplaced-scaffold na na JAFEJT020000087.1 = NZ_JAFEJT020000087.1 Primary Assembly 9512 na Contig_088 unplaced-scaffold na na JAFEJT020000088.1 = NZ_JAFEJT020000088.1 Primary Assembly 9183 na Contig_089 unplaced-scaffold na na JAFEJT020000089.1 = NZ_JAFEJT020000089.1 Primary Assembly 9147 na Contig_090 unplaced-scaffold na na JAFEJT020000090.1 = NZ_JAFEJT020000090.1 Primary Assembly 8795 na Contig_091 unplaced-scaffold na na JAFEJT020000091.1 = NZ_JAFEJT020000091.1 Primary Assembly 8454 na Contig_092 unplaced-scaffold na na JAFEJT020000092.1 = NZ_JAFEJT020000092.1 Primary Assembly 8194 na Contig_093 unplaced-scaffold na na JAFEJT020000093.1 = NZ_JAFEJT020000093.1 Primary Assembly 7639 na Contig_094 unplaced-scaffold na na JAFEJT020000094.1 = NZ_JAFEJT020000094.1 Primary Assembly 7033 na Contig_095 unplaced-scaffold na na JAFEJT020000095.1 = NZ_JAFEJT020000095.1 Primary Assembly 6425 na Contig_096 unplaced-scaffold na na JAFEJT020000096.1 = NZ_JAFEJT020000096.1 Primary Assembly 6137 na Contig_097 unplaced-scaffold na na JAFEJT020000097.1 = NZ_JAFEJT020000097.1 Primary Assembly 6024 na Contig_098 unplaced-scaffold na na JAFEJT020000098.1 = NZ_JAFEJT020000098.1 Primary Assembly 6012 na Contig_099 unplaced-scaffold na na JAFEJT020000099.1 = NZ_JAFEJT020000099.1 Primary Assembly 5972 na Contig_100 unplaced-scaffold na na JAFEJT020000100.1 = NZ_JAFEJT020000100.1 Primary Assembly 5752 na Contig_101 unplaced-scaffold na na JAFEJT020000101.1 = NZ_JAFEJT020000101.1 Primary Assembly 5740 na Contig_102 unplaced-scaffold na na JAFEJT020000102.1 = NZ_JAFEJT020000102.1 Primary Assembly 4985 na Contig_103 unplaced-scaffold na na JAFEJT020000103.1 = NZ_JAFEJT020000103.1 Primary Assembly 4920 na Contig_104 unplaced-scaffold na na JAFEJT020000104.1 = NZ_JAFEJT020000104.1 Primary Assembly 4713 na Contig_105 unplaced-scaffold na na JAFEJT020000105.1 = NZ_JAFEJT020000105.1 Primary Assembly 4649 na Contig_106 unplaced-scaffold na na JAFEJT020000106.1 = NZ_JAFEJT020000106.1 Primary Assembly 4073 na Contig_107 unplaced-scaffold na na JAFEJT020000107.1 = NZ_JAFEJT020000107.1 Primary Assembly 3950 na Contig_108 unplaced-scaffold na na JAFEJT020000108.1 = NZ_JAFEJT020000108.1 Primary Assembly 3637 na Contig_109 unplaced-scaffold na na JAFEJT020000109.1 = NZ_JAFEJT020000109.1 Primary Assembly 3596 na Contig_110 unplaced-scaffold na na JAFEJT020000110.1 = NZ_JAFEJT020000110.1 Primary Assembly 3589 na Contig_111 unplaced-scaffold na na JAFEJT020000111.1 = NZ_JAFEJT020000111.1 Primary Assembly 3259 na Contig_112 unplaced-scaffold na na JAFEJT020000112.1 = NZ_JAFEJT020000112.1 Primary Assembly 2797 na Contig_113 unplaced-scaffold na na JAFEJT020000113.1 = NZ_JAFEJT020000113.1 Primary Assembly 2786 na Contig_114 unplaced-scaffold na na JAFEJT020000114.1 = NZ_JAFEJT020000114.1 Primary Assembly 2750 na Contig_115 unplaced-scaffold na na JAFEJT020000115.1 = NZ_JAFEJT020000115.1 Primary Assembly 2680 na Contig_116 unplaced-scaffold na na JAFEJT020000116.1 = NZ_JAFEJT020000116.1 Primary Assembly 2516 na Contig_117 unplaced-scaffold na na JAFEJT020000117.1 = NZ_JAFEJT020000117.1 Primary Assembly 2293 na Contig_118 unplaced-scaffold na na JAFEJT020000118.1 = NZ_JAFEJT020000118.1 Primary Assembly 5552 na Contig_119 unplaced-scaffold na na JAFEJT020000119.1 = NZ_JAFEJT020000119.1 Primary Assembly 2087 na Contig_120 unplaced-scaffold na na JAFEJT020000120.1 = NZ_JAFEJT020000120.1 Primary Assembly 1970 na Contig_121 unplaced-scaffold na na JAFEJT020000121.1 = NZ_JAFEJT020000121.1 Primary Assembly 1933 na Contig_122 unplaced-scaffold na na JAFEJT020000122.1 = NZ_JAFEJT020000122.1 Primary Assembly 1908 na Contig_123 unplaced-scaffold na na JAFEJT020000123.1 = NZ_JAFEJT020000123.1 Primary Assembly 1819 na Contig_124 unplaced-scaffold na na JAFEJT020000124.1 = NZ_JAFEJT020000124.1 Primary Assembly 1814 na Contig_125 unplaced-scaffold na na JAFEJT020000125.1 = NZ_JAFEJT020000125.1 Primary Assembly 1712 na Contig_126 unplaced-scaffold na na JAFEJT020000126.1 = NZ_JAFEJT020000126.1 Primary Assembly 1708 na Contig_127 unplaced-scaffold na na JAFEJT020000127.1 = NZ_JAFEJT020000127.1 Primary Assembly 1654 na Contig_128 unplaced-scaffold na na JAFEJT020000128.1 = NZ_JAFEJT020000128.1 Primary Assembly 1472 na Contig_129 unplaced-scaffold na na JAFEJT020000129.1 = NZ_JAFEJT020000129.1 Primary Assembly 1457 na Contig_130 unplaced-scaffold na na JAFEJT020000130.1 = NZ_JAFEJT020000130.1 Primary Assembly 1439 na Contig_131 unplaced-scaffold na na JAFEJT020000131.1 = NZ_JAFEJT020000131.1 Primary Assembly 1352 na Contig_132 unplaced-scaffold na na JAFEJT020000132.1 = NZ_JAFEJT020000132.1 Primary Assembly 1335 na Contig_133 unplaced-scaffold na na JAFEJT020000133.1 = NZ_JAFEJT020000133.1 Primary Assembly 1034 na