# Assembly name: ASM1980259v1 # Organism name: Syngnathoides biaculeatus (alligator pipefish) # Isolate: LvHL_M # Sex: male # Taxid: 300417 # BioSample: SAMN16446372 # BioProject: PRJNA669508 # Submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences # Date: 2021-09-09 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADLZI01 # Assembly method: FALCON v. 1.0 # Expected final version: no # Genome coverage: 82x # Sequencing technology: PacBio Sequel; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_019802595.1 # RefSeq assembly accession: GCF_019802595.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_019802605.1 GCF_019802605.1 Primary Assembly ## GCF_034480725.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Seq001 assembled-molecule 1 Chromosome CM034204.1 = NC_084640.1 Primary Assembly 16859975 na Seq002 assembled-molecule 2 Chromosome CM034205.1 = NC_084641.1 Primary Assembly 44255145 na Seq003 assembled-molecule 3 Chromosome CM034206.1 = NC_084642.1 Primary Assembly 40738570 na Seq004 assembled-molecule 4 Chromosome CM034207.1 = NC_084643.1 Primary Assembly 35662481 na Seq005 assembled-molecule 5 Chromosome CM034208.1 = NC_084644.1 Primary Assembly 34745934 na Seq006 assembled-molecule 6 Chromosome CM034209.1 = NC_084645.1 Primary Assembly 34477477 na Seq007 assembled-molecule 7 Chromosome CM034210.1 = NC_084646.1 Primary Assembly 32999137 na Seq008 assembled-molecule 8 Chromosome CM034211.1 = NC_084647.1 Primary Assembly 32832259 na Seq009 assembled-molecule 9 Chromosome CM034212.1 = NC_084648.1 Primary Assembly 32634731 na Seq010 assembled-molecule 10 Chromosome CM034213.1 = NC_084649.1 Primary Assembly 31867959 na Seq011 assembled-molecule 11 Chromosome CM034214.1 = NC_084650.1 Primary Assembly 31275946 na Seq012 assembled-molecule 12 Chromosome CM034215.1 = NC_084651.1 Primary Assembly 30508525 na Seq013 assembled-molecule 13 Chromosome CM034216.1 = NC_084652.1 Primary Assembly 29201469 na Seq014 assembled-molecule 14 Chromosome CM034217.1 = NC_084653.1 Primary Assembly 28750669 na Seq015 assembled-molecule 15 Chromosome CM034218.1 = NC_084654.1 Primary Assembly 25985863 na Seq016 assembled-molecule 16 Chromosome CM034219.1 = NC_084655.1 Primary Assembly 25323428 na Seq017 assembled-molecule 17 Chromosome CM034220.1 = NC_084656.1 Primary Assembly 23986491 na Seq018 assembled-molecule 18 Chromosome CM034221.1 = NC_084657.1 Primary Assembly 20181777 na Seq019 assembled-molecule 19 Chromosome CM034222.1 = NC_084658.1 Primary Assembly 18180400 na Seq020 assembled-molecule 20 Chromosome CM034223.1 = NC_084659.1 Primary Assembly 17361362 na Seq021 assembled-molecule 21 Chromosome CM034224.1 = NC_084660.1 Primary Assembly 6744010 na Seq022 assembled-molecule 22 Chromosome CM034225.1 = NC_084661.1 Primary Assembly 18927247 na Seq023 assembled-molecule 23 Chromosome CM034226.1 = NC_084662.1 Primary Assembly 20996429 na ctg77_pilon_pilon_ERROPOS100405 unplaced-scaffold na na JADLZI010000024.1 = NW_026907533.1 Primary Assembly 100405 na ctg77_pilon_pilon_ERROPOS100405+ unplaced-scaffold na na JADLZI010000025.1 = NW_026907534.1 Primary Assembly 53715 na ctg155_pilon_pilon unplaced-scaffold na na JADLZI010000026.1 = NW_026907432.1 Primary Assembly 25244 na ctg237_pilon_pilon unplaced-scaffold na na JADLZI010000027.1 = NW_026907492.1 Primary Assembly 5225 na ctg184_pilon_pilon unplaced-scaffold na na JADLZI010000028.1 = NW_026907442.1 Primary Assembly 19392 na ctg105_pilon_pilon unplaced-scaffold na na JADLZI010000029.1 = NW_026907420.1 Primary Assembly 31761 na ctg255_pilon_pilon unplaced-scaffold na na JADLZI010000030.1 = NW_026907510.1 Primary Assembly 5042 na ctg210_pilon_pilon unplaced-scaffold na na JADLZI010000031.1 = NW_026907465.1 Primary Assembly 15228 na ctg227_pilon_pilon unplaced-scaffold na na JADLZI010000032.1 = NW_026907482.1 Primary Assembly 10730 na ctg259_pilon_pilon unplaced-scaffold na na JADLZI010000033.1 = NW_026907514.1 Primary Assembly 4481 na ctg134_pilon_pilon unplaced-scaffold na na JADLZI010000034.1 = NW_026907428.1 Primary Assembly 30171 na ctg232_pilon_pilon unplaced-scaffold na na JADLZI010000035.1 = NW_026907487.1 Primary Assembly 9744 na ctg274_pilon_pilon unplaced-scaffold na na JADLZI010000036.1 = NW_026907528.1 Primary Assembly 3143 na ctg223_pilon_pilon unplaced-scaffold na na JADLZI010000037.1 = NW_026907478.1 Primary Assembly 11278 na ctg174_pilon_pilon unplaced-scaffold na na JADLZI010000038.1 = NW_026907437.1 Primary Assembly 21354 na ctg258_pilon_pilon unplaced-scaffold na na JADLZI010000039.1 = NW_026907513.1 Primary Assembly 4653 na ctg204_pilon_pilon unplaced-scaffold na na JADLZI010000040.1 = NW_026907459.1 Primary Assembly 19982 na ctg172_pilon_pilon unplaced-scaffold na na JADLZI010000041.1 = NW_026907436.1 Primary Assembly 21650 na ctg248_pilon_pilon unplaced-scaffold na na JADLZI010000042.1 = NW_026907503.1 Primary Assembly 6647 na ctg269_pilon_pilon unplaced-scaffold na na JADLZI010000043.1 = NW_026907524.1 Primary Assembly 3418 na ctg151_pilon_pilon unplaced-scaffold na na JADLZI010000044.1 = NW_026907431.1 Primary Assembly 26395 na ctg245_pilon_pilon unplaced-scaffold na na JADLZI010000045.1 = NW_026907500.1 Primary Assembly 8420 na ctg238_pilon_pilon unplaced-scaffold na na JADLZI010000046.1 = NW_026907493.1 Primary Assembly 8119 na ctg235_pilon_pilon unplaced-scaffold na na JADLZI010000047.1 = NW_026907490.1 Primary Assembly 9202 na ctg265_pilon_pilon unplaced-scaffold na na JADLZI010000048.1 = NW_026907520.1 Primary Assembly 4460 na ctg81_pilon_pilon unplaced-scaffold na na JADLZI010000049.1 = NW_026907535.1 Primary Assembly 58487 na ctg220_pilon_pilon unplaced-scaffold na na JADLZI010000050.1 = NW_026907475.1 Primary Assembly 12246 na ctg208_pilon_pilon unplaced-scaffold na na JADLZI010000051.1 = NW_026907463.1 Primary Assembly 15542 na ctg260_pilon_pilon unplaced-scaffold na na JADLZI010000052.1 = NW_026907515.1 Primary Assembly 4498 na ctg236_pilon_pilon unplaced-scaffold na na JADLZI010000053.1 = NW_026907491.1 Primary Assembly 9027 na ctg216_pilon_pilon unplaced-scaffold na na JADLZI010000054.1 = NW_026907471.1 Primary Assembly 12833 na ctg276_pilon_pilon unplaced-scaffold na na JADLZI010000055.1 = NW_026907530.1 Primary Assembly 2814 na ctg194_pilon_pilon unplaced-scaffold na na JADLZI010000056.1 = NW_026907450.1 Primary Assembly 18024 na ctg132_pilon_pilon unplaced-scaffold na na JADLZI010000057.1 = NW_026907427.1 Primary Assembly 30489 na ctg230_pilon_pilon unplaced-scaffold na na JADLZI010000058.1 = NW_026907485.1 Primary Assembly 10135 na ctg239_pilon_pilon unplaced-scaffold na na JADLZI010000059.1 = NW_026907494.1 Primary Assembly 7959 na ctg181_pilon_pilon unplaced-scaffold na na JADLZI010000060.1 = NW_026907439.1 Primary Assembly 19412 na ctg187_pilon_pilon unplaced-scaffold na na JADLZI010000061.1 = NW_026907444.1 Primary Assembly 19559 na ctg104_pilon_pilon unplaced-scaffold na na JADLZI010000062.1 = NW_026907419.1 Primary Assembly 41780 na ctg250_pilon_pilon unplaced-scaffold na na JADLZI010000063.1 = NW_026907505.1 Primary Assembly 5816 na ctg192_pilon_pilon unplaced-scaffold na na JADLZI010000064.1 = NW_026907449.1 Primary Assembly 17715 na ctg197_pilon_pilon unplaced-scaffold na na JADLZI010000065.1 = NW_026907453.1 Primary Assembly 11211 na ctg234_pilon_pilon unplaced-scaffold na na JADLZI010000066.1 = NW_026907489.1 Primary Assembly 9724 na ctg253_pilon_pilon unplaced-scaffold na na JADLZI010000067.1 = NW_026907508.1 Primary Assembly 6539 na ctg215_pilon_pilon unplaced-scaffold na na JADLZI010000068.1 = NW_026907470.1 Primary Assembly 13496 na ctg207_pilon_pilon unplaced-scaffold na na JADLZI010000069.1 = NW_026907462.1 Primary Assembly 15415 na ctg224_pilon_pilon unplaced-scaffold na na JADLZI010000070.1 = NW_026907479.1 Primary Assembly 10642 na ctg211_pilon_pilon unplaced-scaffold na na JADLZI010000071.1 = NW_026907466.1 Primary Assembly 12837 na ctg188_pilon_pilon unplaced-scaffold na na JADLZI010000072.1 = NW_026907445.1 Primary Assembly 18988 na ctg177_pilon_pilon unplaced-scaffold na na JADLZI010000073.1 = NW_026907438.1 Primary Assembly 20666 na ctg254_pilon_pilon unplaced-scaffold na na JADLZI010000074.1 = NW_026907509.1 Primary Assembly 5247 na ctg135_pilon_pilon unplaced-scaffold na na JADLZI010000075.1 = NW_026907429.1 Primary Assembly 23531 na ctg190_pilon_pilon unplaced-scaffold na na JADLZI010000076.1 = NW_026907447.1 Primary Assembly 18626 na ctg121_pilon_pilon unplaced-scaffold na na JADLZI010000077.1 = NW_026907424.1 Primary Assembly 25086 na ctg164_pilon_pilon unplaced-scaffold na na JADLZI010000078.1 = NW_026907435.1 Primary Assembly 23386 na ctg266_pilon_pilon unplaced-scaffold na na JADLZI010000079.1 = NW_026907521.1 Primary Assembly 3729 na ctg252_pilon_pilon unplaced-scaffold na na JADLZI010000080.1 = NW_026907507.1 Primary Assembly 5628 na ctg200_pilon_pilon unplaced-scaffold na na JADLZI010000081.1 = NW_026907455.1 Primary Assembly 16976 na ctg231_pilon_pilon unplaced-scaffold na na JADLZI010000082.1 = NW_026907486.1 Primary Assembly 9918 na ctg256_pilon_pilon unplaced-scaffold na na JADLZI010000083.1 = NW_026907511.1 Primary Assembly 5002 na ctg108_pilon_pilon unplaced-scaffold na na JADLZI010000084.1 = NW_026907421.1 Primary Assembly 33866 na ctg189_pilon_pilon unplaced-scaffold na na JADLZI010000085.1 = NW_026907446.1 Primary Assembly 18781 na ctg212_pilon_pilon unplaced-scaffold na na JADLZI010000086.1 = NW_026907467.1 Primary Assembly 14072 na ctg218_pilon_pilon unplaced-scaffold na na JADLZI010000087.1 = NW_026907473.1 Primary Assembly 12525 na ctg226_pilon_pilon unplaced-scaffold na na JADLZI010000088.1 = NW_026907481.1 Primary Assembly 10780 na ctg196_pilon_pilon unplaced-scaffold na na JADLZI010000089.1 = NW_026907452.1 Primary Assembly 18711 na ctg157_pilon_pilon unplaced-scaffold na na JADLZI010000090.1 = NW_026907433.1 Primary Assembly 26236 na ctg124_pilon_pilon unplaced-scaffold na na JADLZI010000091.1 = NW_026907425.1 Primary Assembly 32838 na ctg262_pilon_pilon unplaced-scaffold na na JADLZI010000092.1 = NW_026907517.1 Primary Assembly 4012 na ctg271_pilon_pilon unplaced-scaffold na na JADLZI010000093.1 = NW_026907525.1 Primary Assembly 3260 na ctg221_pilon_pilon unplaced-scaffold na na JADLZI010000094.1 = NW_026907476.1 Primary Assembly 12079 na ctg201_pilon_pilon unplaced-scaffold na na JADLZI010000095.1 = NW_026907456.1 Primary Assembly 16531 na ctg225_pilon_pilon unplaced-scaffold na na JADLZI010000096.1 = NW_026907480.1 Primary Assembly 10749 na ctg247_pilon_pilon unplaced-scaffold na na JADLZI010000097.1 = NW_026907502.1 Primary Assembly 7411 na ctg186_pilon_pilon unplaced-scaffold na na JADLZI010000098.1 = NW_026907443.1 Primary Assembly 19474 na ctg263_pilon_pilon unplaced-scaffold na na JADLZI010000099.1 = NW_026907518.1 Primary Assembly 4025 na ctg127_pilon_pilon unplaced-scaffold na na JADLZI010000100.1 = NW_026907426.1 Primary Assembly 56767 na ctg257_pilon_pilon unplaced-scaffold na na JADLZI010000101.1 = NW_026907512.1 Primary Assembly 4742 na ctg198_pilon_pilon unplaced-scaffold na na JADLZI010000102.1 = NW_026907454.1 Primary Assembly 17590 na ctg213_pilon_pilon unplaced-scaffold na na JADLZI010000103.1 = NW_026907468.1 Primary Assembly 13609 na ctg233_pilon_pilon unplaced-scaffold na na JADLZI010000104.1 = NW_026907488.1 Primary Assembly 9548 na ctg264_pilon_pilon unplaced-scaffold na na JADLZI010000105.1 = NW_026907519.1 Primary Assembly 3856 na ctg242_pilon_pilon unplaced-scaffold na na JADLZI010000106.1 = NW_026907497.1 Primary Assembly 7855 na ctg217_pilon_pilon unplaced-scaffold na na JADLZI010000107.1 = NW_026907472.1 Primary Assembly 12508 na ctg92_pilon_pilon unplaced-scaffold na na JADLZI010000108.1 = NW_026907536.1 Primary Assembly 48943 na ctg183_pilon_pilon unplaced-scaffold na na JADLZI010000109.1 = NW_026907441.1 Primary Assembly 19454 na ctg275_pilon_pilon unplaced-scaffold na na JADLZI010000110.1 = NW_026907529.1 Primary Assembly 2964 na ctg209_pilon_pilon unplaced-scaffold na na JADLZI010000111.1 = NW_026907464.1 Primary Assembly 15357 na ctg219_pilon_pilon unplaced-scaffold na na JADLZI010000112.1 = NW_026907474.1 Primary Assembly 12341 na ctg244_pilon_pilon unplaced-scaffold na na JADLZI010000113.1 = NW_026907499.1 Primary Assembly 7746 na ctg112_pilon_pilon unplaced-scaffold na na JADLZI010000114.1 = NW_026907422.1 Primary Assembly 34729 na ctg203_pilon_pilon unplaced-scaffold na na JADLZI010000115.1 = NW_026907458.1 Primary Assembly 16903 na ctg249_pilon_pilon unplaced-scaffold na na JADLZI010000116.1 = NW_026907504.1 Primary Assembly 6408 na ctg144_pilon_pilon unplaced-scaffold na na JADLZI010000117.1 = NW_026907430.1 Primary Assembly 27976 na ctg267_pilon_pilon unplaced-scaffold na na JADLZI010000118.1 = NW_026907522.1 Primary Assembly 3422 na ctg229_pilon_pilon unplaced-scaffold na na JADLZI010000119.1 = NW_026907484.1 Primary Assembly 10399 na ctg159_pilon_pilon unplaced-scaffold na na JADLZI010000120.1 = NW_026907434.1 Primary Assembly 21308 na ctg195_pilon_pilon unplaced-scaffold na na JADLZI010000121.1 = NW_026907451.1 Primary Assembly 17036 na ctg243_pilon_pilon unplaced-scaffold na na JADLZI010000122.1 = NW_026907498.1 Primary Assembly 7852 na ctg93_pilon_pilon unplaced-scaffold na na JADLZI010000123.1 = NW_026907537.1 Primary Assembly 64399 na ctg117_pilon_pilon unplaced-scaffold na na JADLZI010000124.1 = NW_026907423.1 Primary Assembly 34401 na ctg69_pilon_pilon unplaced-scaffold na na JADLZI010000125.1 = NW_026907532.1 Primary Assembly 130667 na ctg241_pilon_pilon unplaced-scaffold na na JADLZI010000126.1 = NW_026907496.1 Primary Assembly 7871 na ctg277_pilon_pilon unplaced-scaffold na na JADLZI010000127.1 = NW_026907531.1 Primary Assembly 2720 na ctg273_pilon_pilon unplaced-scaffold na na JADLZI010000128.1 = NW_026907527.1 Primary Assembly 3206 na ctg251_pilon_pilon unplaced-scaffold na na JADLZI010000129.1 = NW_026907506.1 Primary Assembly 5987 na ctg214_pilon_pilon unplaced-scaffold na na JADLZI010000130.1 = NW_026907469.1 Primary Assembly 13624 na ctg268_pilon_pilon unplaced-scaffold na na JADLZI010000131.1 = NW_026907523.1 Primary Assembly 3445 na ctg191_pilon_pilon unplaced-scaffold na na JADLZI010000132.1 = NW_026907448.1 Primary Assembly 18582 na ctg240_pilon_pilon unplaced-scaffold na na JADLZI010000133.1 = NW_026907495.1 Primary Assembly 4048 na ctg205_pilon_pilon unplaced-scaffold na na JADLZI010000134.1 = NW_026907460.1 Primary Assembly 16213 na ctg202_pilon_pilon unplaced-scaffold na na JADLZI010000135.1 = NW_026907457.1 Primary Assembly 16647 na ctg206_pilon_pilon unplaced-scaffold na na JADLZI010000136.1 = NW_026907461.1 Primary Assembly 15948 na ctg182_pilon_pilon unplaced-scaffold na na JADLZI010000137.1 = NW_026907440.1 Primary Assembly 19715 na ctg261_pilon_pilon unplaced-scaffold na na JADLZI010000138.1 = NW_026907516.1 Primary Assembly 4189 na ctg228_pilon_pilon unplaced-scaffold na na JADLZI010000139.1 = NW_026907483.1 Primary Assembly 10704 na ctg222_pilon_pilon unplaced-scaffold na na JADLZI010000140.1 = NW_026907477.1 Primary Assembly 11275 na ctg272_pilon_pilon unplaced-scaffold na na JADLZI010000141.1 = NW_026907526.1 Primary Assembly 3189 na ctg246_pilon_pilon unplaced-scaffold na na JADLZI010000142.1 = NW_026907501.1 Primary Assembly 7606 na MT assembled-molecule MT Mitochondrion na <> NC_037045.1 non-nuclear 16479 na