The repeat files provided for this assembly were generated using RepeatMasker.
  Smit, AFA, Hubley, R & Green, P.,
  RepeatMasker Open-4.0.
  1996-2010 <http://www.repeatmasker.org>.

VERSION:
RepeatMasker version 4.1.2-p1
Search Engine: Crossmatch [ 1.090518 ]

Using Master RepeatMasker Database: /hive/data/staging/data/RepeatMasker210401/Libraries/RepeatMaskerLib.h5
  Title    : Dfam
  Version  : 3.3
  Date     : 2020-11-09
  Families : 6,953

Species/Taxa Search:
  Trifolium pratense [NCBI Taxonomy ID: 57577]
  Lineage: root;cellular organisms;Eukaryota;Viridiplantae;
           Streptophyta;Streptophytina;Embryophyta;Tracheophyta;
           Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;
           eudicotyledons;Gunneridae;Pentapetalae;rosids;fabids;
           Fabales;Fabaceae;Papilionoideae;50 kb inversion clade
  9 families in ancestor taxa; 0 lineage-specific families

Building general libraries in: /hive/data/staging/data/RepeatMasker210401/Libraries/CONS-Dfam_3.3/general
Building species libraries in: /hive/data/staging/data/RepeatMasker210401/Libraries/CONS-Dfam_3.3/Trifolium_pratense
RepeatMasker version 4.1.2-p1
CC    Artefacts RELEASE 20190301;                                 *
CC    Dfam RELEASE Dfam_3.1;                                      *
# RepeatMasker engine: -engine crossmatch -s
# RepeatMasker library options: -species 'Trifolium pratense'

PARAMETERS:
/hive/data/staging/data/RepeatMasker/RepeatMasker -engine crossmatch -s -align -species 'Trifolium pratense'