# Assembly name: ARS_RC_1.1 # Organism name: Trifolium pratense (eudicots) # Infraspecific name: cultivar=HEN17-A07 # Taxid: 57577 # BioSample: SAMN20750279 # BioProject: PRJNA754186 # Submitter: USDA ARS # Date: 2021-10-13 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAIHMJ01 # Assembly method: PacBio IPA v. 1.3.0; SALSA v. 2 # Expected final version: yes # Genome coverage: 55.0x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_020283565.1 # RefSeq assembly accession: GCF_020283565.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020283575.1 GCF_020283575.1 Primary Assembly ## GCF_021437265.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name LG1 assembled-molecule LG1 Linkage Group CM035398.1 = NC_060059.1 Primary Assembly 53636235 na LG2 assembled-molecule LG2 Linkage Group CM035399.1 = NC_060060.1 Primary Assembly 74482258 na LG3 assembled-molecule LG3 Linkage Group CM035400.1 = NC_060061.1 Primary Assembly 54401257 na LG4 assembled-molecule LG4 Linkage Group CM035401.1 = NC_060062.1 Primary Assembly 60497071 na LG5 assembled-molecule LG5 Linkage Group CM035402.1 = NC_060063.1 Primary Assembly 57907604 na LG6 assembled-molecule LG6 Linkage Group CM035403.1 = NC_060064.1 Primary Assembly 46137615 na LG7 assembled-molecule LG7 Linkage Group CM035404.1 = NC_060065.1 Primary Assembly 59241982 na scaffold_100 unplaced-scaffold na na JAIHMJ010000008.1 = NW_025721001.1 Primary Assembly 59633 na scaffold_101 unplaced-scaffold na na JAIHMJ010000009.1 = NW_025721002.1 Primary Assembly 59476 na scaffold_102 unplaced-scaffold na na JAIHMJ010000010.1 = NW_025721003.1 Primary Assembly 59465 na scaffold_103 unplaced-scaffold na na JAIHMJ010000011.1 = NW_025721004.1 Primary Assembly 59029 na scaffold_104 unplaced-scaffold na na JAIHMJ010000012.1 = NW_025721005.1 Primary Assembly 58513 na scaffold_105 unplaced-scaffold na na JAIHMJ010000013.1 = NW_025721006.1 Primary Assembly 56989 na scaffold_106 unplaced-scaffold na na JAIHMJ010000014.1 = NW_025721007.1 Primary Assembly 56218 na scaffold_107 unplaced-scaffold na na JAIHMJ010000015.1 = NW_025721008.1 Primary Assembly 55859 na scaffold_108 unplaced-scaffold na na JAIHMJ010000016.1 = NW_025721009.1 Primary Assembly 55848 na scaffold_109 unplaced-scaffold na na JAIHMJ010000017.1 = NW_025721010.1 Primary Assembly 55661 na scaffold_110 unplaced-scaffold na na JAIHMJ010000018.1 = NW_025721011.1 Primary Assembly 55530 na scaffold_111 unplaced-scaffold na na JAIHMJ010000019.1 = NW_025721012.1 Primary Assembly 55329 na scaffold_112 unplaced-scaffold na na JAIHMJ010000020.1 = NW_025721013.1 Primary Assembly 55161 na scaffold_113 unplaced-scaffold na na JAIHMJ010000021.1 = NW_025721014.1 Primary Assembly 55136 na scaffold_114 unplaced-scaffold na na JAIHMJ010000022.1 = NW_025721015.1 Primary Assembly 55075 na scaffold_115 unplaced-scaffold na na JAIHMJ010000023.1 = NW_025721016.1 Primary Assembly 54786 na scaffold_116 unplaced-scaffold na na JAIHMJ010000024.1 = NW_025721017.1 Primary Assembly 54746 na scaffold_117 unplaced-scaffold na na JAIHMJ010000025.1 = NW_025721018.1 Primary Assembly 54456 na scaffold_118 unplaced-scaffold na na JAIHMJ010000026.1 = NW_025721019.1 Primary Assembly 54353 na scaffold_119 unplaced-scaffold na na JAIHMJ010000027.1 = NW_025721020.1 Primary Assembly 54117 na scaffold_120 unplaced-scaffold na na JAIHMJ010000028.1 = NW_025721021.1 Primary Assembly 54089 na scaffold_121 unplaced-scaffold na na JAIHMJ010000029.1 = NW_025721022.1 Primary Assembly 53696 na scaffold_122 unplaced-scaffold na na JAIHMJ010000030.1 = NW_025721023.1 Primary Assembly 52687 na scaffold_123 unplaced-scaffold na na JAIHMJ010000031.1 = NW_025721024.1 Primary Assembly 52400 na scaffold_124 unplaced-scaffold na na JAIHMJ010000032.1 = NW_025721025.1 Primary Assembly 51925 na scaffold_125 unplaced-scaffold na na JAIHMJ010000033.1 = NW_025721026.1 Primary Assembly 51801 na scaffold_126 unplaced-scaffold na na JAIHMJ010000034.1 = NW_025721027.1 Primary Assembly 51798 na scaffold_127 unplaced-scaffold na na JAIHMJ010000035.1 = NW_025721028.1 Primary Assembly 51561 na scaffold_128 unplaced-scaffold na na JAIHMJ010000036.1 = NW_025721029.1 Primary Assembly 51488 na scaffold_129 unplaced-scaffold na na JAIHMJ010000037.1 = NW_025721030.1 Primary Assembly 51461 na scaffold_130 unplaced-scaffold na na JAIHMJ010000038.1 = NW_025721031.1 Primary Assembly 51208 na scaffold_131 unplaced-scaffold na na JAIHMJ010000039.1 = NW_025721032.1 Primary Assembly 51169 na scaffold_132 unplaced-scaffold na na JAIHMJ010000040.1 = NW_025721033.1 Primary Assembly 50753 na scaffold_133 unplaced-scaffold na na JAIHMJ010000041.1 = NW_025721034.1 Primary Assembly 50583 na scaffold_134 unplaced-scaffold na na JAIHMJ010000042.1 = NW_025721035.1 Primary Assembly 50428 na scaffold_135 unplaced-scaffold na na JAIHMJ010000043.1 = NW_025721036.1 Primary Assembly 50395 na scaffold_136 unplaced-scaffold na na JAIHMJ010000044.1 = NW_025721037.1 Primary Assembly 50202 na scaffold_137 unplaced-scaffold na na JAIHMJ010000045.1 = NW_025721038.1 Primary Assembly 49951 na scaffold_138 unplaced-scaffold na na JAIHMJ010000046.1 = NW_025721039.1 Primary Assembly 48622 na scaffold_139 unplaced-scaffold na na JAIHMJ010000047.1 = NW_025721040.1 Primary Assembly 43822 na scaffold_141 unplaced-scaffold na na JAIHMJ010000048.1 = NW_025721041.1 Primary Assembly 25782 na scaffold_142 unplaced-scaffold na na JAIHMJ010000049.1 = NW_025721042.1 Primary Assembly 22339 na scaffold_143 unplaced-scaffold na na JAIHMJ010000050.1 = NW_025721043.1 Primary Assembly 22263 na scaffold_55 unplaced-scaffold na na JAIHMJ010000051.1 = NW_025721044.1 Primary Assembly 637966 na scaffold_57 unplaced-scaffold na na JAIHMJ010000052.1 = NW_025721045.1 Primary Assembly 401748 na scaffold_60 unplaced-scaffold na na JAIHMJ010000053.1 = NW_025721046.1 Primary Assembly 355425 na scaffold_62 unplaced-scaffold na na JAIHMJ010000054.1 = NW_025721047.1 Primary Assembly 260881 na scaffold_63 unplaced-scaffold na na JAIHMJ010000055.1 = NW_025721048.1 Primary Assembly 253988 na scaffold_65 unplaced-scaffold na na JAIHMJ010000056.1 = NW_025721049.1 Primary Assembly 205656 na scaffold_66 unplaced-scaffold na na JAIHMJ010000057.1 = NW_025721050.1 Primary Assembly 203933 na scaffold_68 unplaced-scaffold na na JAIHMJ010000058.1 = NW_025721051.1 Primary Assembly 170856 na scaffold_69 unplaced-scaffold na na JAIHMJ010000059.1 = NW_025721052.1 Primary Assembly 155623 na scaffold_70 unplaced-scaffold na na JAIHMJ010000060.1 = NW_025721053.1 Primary Assembly 152761 na scaffold_71 unplaced-scaffold na na JAIHMJ010000061.1 = NW_025721054.1 Primary Assembly 151112 na scaffold_72 unplaced-scaffold na na JAIHMJ010000062.1 = NW_025721055.1 Primary Assembly 135730 na scaffold_73 unplaced-scaffold na na JAIHMJ010000063.1 = NW_025721056.1 Primary Assembly 129115 na scaffold_74 unplaced-scaffold na na JAIHMJ010000064.1 = NW_025721057.1 Primary Assembly 108308 na scaffold_76 unplaced-scaffold na na JAIHMJ010000065.1 = NW_025721058.1 Primary Assembly 96910 na scaffold_77 unplaced-scaffold na na JAIHMJ010000066.1 = NW_025721059.1 Primary Assembly 92974 na scaffold_78 unplaced-scaffold na na JAIHMJ010000067.1 = NW_025721060.1 Primary Assembly 92903 na scaffold_79 unplaced-scaffold na na JAIHMJ010000068.1 = NW_025721061.1 Primary Assembly 87809 na scaffold_80 unplaced-scaffold na na JAIHMJ010000069.1 = NW_025721062.1 Primary Assembly 82274 na scaffold_81 unplaced-scaffold na na JAIHMJ010000070.1 = NW_025721063.1 Primary Assembly 79718 na scaffold_82 unplaced-scaffold na na JAIHMJ010000071.1 = NW_025721064.1 Primary Assembly 78828 na scaffold_83 unplaced-scaffold na na JAIHMJ010000072.1 = NW_025721065.1 Primary Assembly 78341 na scaffold_84 unplaced-scaffold na na JAIHMJ010000073.1 = NW_025721066.1 Primary Assembly 78324 na scaffold_85 unplaced-scaffold na na JAIHMJ010000074.1 = NW_025721067.1 Primary Assembly 76125 na scaffold_86 unplaced-scaffold na na JAIHMJ010000075.1 = NW_025721068.1 Primary Assembly 70180 na scaffold_87 unplaced-scaffold na na JAIHMJ010000076.1 = NW_025721069.1 Primary Assembly 67218 na scaffold_88 unplaced-scaffold na na JAIHMJ010000077.1 = NW_025721070.1 Primary Assembly 66358 na scaffold_89 unplaced-scaffold na na JAIHMJ010000078.1 = NW_025721071.1 Primary Assembly 65221 na scaffold_90 unplaced-scaffold na na JAIHMJ010000079.1 = NW_025721072.1 Primary Assembly 64540 na scaffold_91 unplaced-scaffold na na JAIHMJ010000080.1 = NW_025721073.1 Primary Assembly 63987 na scaffold_92 unplaced-scaffold na na JAIHMJ010000081.1 = NW_025721074.1 Primary Assembly 63984 na scaffold_93 unplaced-scaffold na na JAIHMJ010000082.1 = NW_025721075.1 Primary Assembly 62914 na scaffold_94 unplaced-scaffold na na JAIHMJ010000083.1 = NW_025721076.1 Primary Assembly 62738 na scaffold_95 unplaced-scaffold na na JAIHMJ010000084.1 = NW_025721077.1 Primary Assembly 61832 na scaffold_96 unplaced-scaffold na na JAIHMJ010000085.1 = NW_025721078.1 Primary Assembly 61532 na scaffold_97 unplaced-scaffold na na JAIHMJ010000086.1 = NW_025721079.1 Primary Assembly 60689 na scaffold_98 unplaced-scaffold na na JAIHMJ010000087.1 = NW_025721080.1 Primary Assembly 60604 na scaffold_99 unplaced-scaffold na na JAIHMJ010000088.1 = NW_025721081.1 Primary Assembly 59968 na MT assembled-molecule MT Mitochondrion na <> NC_048499.1 non-nuclear 301823 na Pltd assembled-molecule Pltd Plastid na <> NC_047412.1 non-nuclear 146573 na