hub GCF_020740605.2 genome assembly
shortLabel ring-tailed lemur (mLemCat1 2021)
longLabel ring-tailed lemur (mLemCat1 2021)/Lemur catta/GCF_020740605.2_mLemCat1.pri genome assembly
useOneFile on
email hclawson@ucsc.edu
descriptionUrl html/GCF_020740605.2_mLemCat1.pri.description.html

genome GCF_020740605.2
taxId 9447
groups groups.txt
description ring-tailed lemur (mLemCat1 2021)
twoBitPath GCF_020740605.2.2bit
twoBitBptUrl GCF_020740605.2.2bit.bpt
chromSizes GCF_020740605.2.chrom.sizes.txt
chromAliasBb GCF_020740605.2.chromAlias.bb
chromAuthority ucsc
organism mLemCat1.pri Nov. 2021
defaultPos NC_059128.1:95558315-95568315
scientificName Lemur catta
htmlPath html/GCF_020740605.2_mLemCat1.pri.description.html
blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/020/740/605/GCF_020740605.2
transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/020/740/605/GCF_020740605.2
isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/020/740/605/GCF_020740605.2
liftOver.GCA_028858775.2 liftOver/GCF_020740605.2ToGCA_028858775.2.over.chain.gz
liftOver.GCA_028878055.2 liftOver/GCF_020740605.2ToGCA_028878055.2.over.chain.gz
liftOver.GCA_028885625.2 liftOver/GCF_020740605.2ToGCA_028885625.2.over.chain.gz
liftOver.GCA_028885655.2 liftOver/GCF_020740605.2ToGCA_028885655.2.over.chain.gz
liftOver.GCA_029281585.2 liftOver/GCF_020740605.2ToGCA_029281585.2.over.chain.gz
liftOver.GCA_029289425.2 liftOver/GCF_020740605.2ToGCA_029289425.2.over.chain.gz
liftOver.GCF_011100555.1 liftOver/GCF_020740605.2ToGCF_011100555.1.over.chain.gz
liftOver.GCF_027406575.1 liftOver/GCF_020740605.2ToGCF_027406575.1.over.chain.gz
liftOver.hg38 liftOver/GCF_020740605.2ToHg38.over.chain.gz
liftOver.hs1 liftOver/GCF_020740605.2ToHs1.over.chain.gz

track assembly
longLabel Assembly
shortLabel Assembly
visibility pack
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.assembly.bb
type bigBed 6
html html/GCF_020740605.2_mLemCat1.pri.assembly
searchIndex name
searchTrix ixIxx/GCF_020740605.2_mLemCat1.pri.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility full
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.gc5Base.bw
html html/GCF_020740605.2_mLemCat1.pri.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCF_020740605.2_mLemCat1.pri.tanDups

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.rmsk.bb
xrefDataUrl bbi/GCF_020740605.2_mLemCat1.pri.rmsk.align.bb
maxWindowToDraw 5000000
html html/GCF_020740605.2_mLemCat1.pri.repeatMasker

track repeatModeler
shortLabel RepeatModeler
longLabel RepeatModeler Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.rModel.bb
xrefDataUrl bbi/GCF_020740605.2_mLemCat1.pri.rModel.align.bb
maxWindowToDraw 5000000
html html/GCF_020740605.2_mLemCat1.pri.repeatModeler

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.simpleRepeat.bb
html html/GCF_020740605.2_mLemCat1.pri.simpleRepeat

track refSeqComposite
compositeTrack on
shortLabel NCBI RefSeq
longLabel RefSeq gene predictions from NCBI
group genes
visibility pack
type bigBed
dragAndDrop subTracks
allButtonPair on
dataVersion NCBI Lemur catta Annotation Release 100 (2021-12-22)
html html/GCF_020740605.2_mLemCat1.pri.refSeqComposite
priority 2

        track ncbiRefSeq
        parent refSeqComposite on
        color 12,12,120
        altColor 120,12,12
        shortLabel RefSeq All
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_020740605.2_mLemCat1.pri.ncbiRefSeq.ix
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.ncbiRefSeq.bb
        longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*)
        idXref ncbiRefSeqLink mrnaAcc name
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 1

        track ncbiRefSeqPredicted
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Predicted
        longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)
        type bigGenePred
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_020740605.2_mLemCat1.pri.ncbiRefSeqPredicted.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.ncbiRefSeqPredicted.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 3

        track ncbiRefSeqOther
        color 32,32,32
        parent refSeqComposite on
        shortLabel RefSeq Other
        longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)
        priority 4
        searchIndex name
        searchTrix ixIxx/GCF_020740605.2_mLemCat1.pri.ncbiRefSeqOther.ix
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.ncbiRefSeqOther.bb
        type bigBed 12 +
        labelFields name
        skipEmptyFields on
        urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"

        track ncbiRefSeqPsl
        priority 5
        parent refSeqComposite off
        shortLabel RefSeq Alignments
        longLabel RefSeq Alignments of RNAs
        type bigPsl
        searchIndex name
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.bigPsl.bb
        indelDoubleInsert on
        indelQueryInsert on
        showDiffBasesAllScales .
        showDiffBasesMaxZoom 10000.0
        showCdsMaxZoom 10000.0
        showCdsAllScales .
        baseColorDefault diffCodons
        pslSequence no
        baseColorUseSequence lfExtra
        baseColorUseCds table given
        color 0,0,0

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility pack
type bigBed 4 +
html html/GCF_020740605.2_mLemCat1.pri.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.windowMasker.bb
html html/GCF_020740605.2_mLemCat1.pri.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.allGaps.bb
html html/GCF_020740605.2_mLemCat1.pri.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility dense
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.augustus.bb
html html/GCF_020740605.2_mLemCat1.pri.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCF_020740605.2_mLemCat1.pri.xenoRefGene.ix
html html/GCF_020740605.2_mLemCat1.pri.xenoRefGene

track GCF_020740605.2_mLemCat1.priChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain alignments to target sequence: GCF_020740605.2_mLemCat1.pri
subGroup1 view Views chain=Chains synten=Syntenic rbest=Reciprocal_best liftover=Lift_over align=Alignment
subGroup2 species Assembly s000=GCF_027406575.1 s001=GCA_028858775.2 s002=GCA_029289425.2 s003=hg38 s004=hs1 s005=GCA_028885655.2 s006=GCA_028885625.2 s007=GCA_029281585.2 s008=GCA_028878055.2 s009=GCF_011100555.1
subGroup3 chainType chain_type c00=chain c01=syntenic c02=reciprocal_best c03=lift_over c04=chain_align c05=syntenic_align c06=reciprocal_align c07=lift_over_align
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=chainType dimensionY=species
sortOrder species=+ view=+ chainType=+
configurable on
html html/GCF_020740605.2_mLemCat1.pri.chainNet

    track GCF_020740605.2_mLemCat1.priChainNetViewchain
    shortLabel Chains
    view chain
    visibility pack
    subTrack GCF_020740605.2_mLemCat1.priChainNet
    spectrum on

    track GCF_020740605.2_mLemCat1.priChainNetViewSynTen
    shortLabel Syntenic
    view synten
    visibility pack
    subTrack GCF_020740605.2_mLemCat1.priChainNet
    spectrum on

    track GCF_020740605.2_mLemCat1.priChainNetViewRBest
    shortLabel Reciprocal best
    view rbest
    visibility pack
    subTrack GCF_020740605.2_mLemCat1.priChainNet
    spectrum on

    track GCF_020740605.2_mLemCat1.priChainNetViewLiftOver
    shortLabel Lift over
    view liftover
    visibility pack
    subTrack GCF_020740605.2_mLemCat1.priChainNet
    spectrum on

        track chainGCF_027406575.1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s000 chainType=c00
        shortLabel slow loris Chain
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigChain GCF_027406575.1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCF_027406575.1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCF_027406575.1Link.bb
        otherDb GCF_027406575.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 52.116

        track chainSynGCF_027406575.1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s000 chainType=c01
        shortLabel slow loris synChain
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigChain GCF_027406575.1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCF_027406575.1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCF_027406575.1Link.bb
        otherDb GCF_027406575.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 52.116

        track chainRBestGCF_027406575.1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s000 chainType=c02
        shortLabel slow loris rbChain
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigChain GCF_027406575.1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCF_027406575.1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCF_027406575.1Link.bb
        otherDb GCF_027406575.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 52.116

        track chainLiftOverGCF_027406575.1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s000 chainType=c03
        shortLabel slow loris loChain
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigChain GCF_027406575.1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCF_027406575.1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCF_027406575.1Link.bb
        otherDb GCF_027406575.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 52.116

        track chainGCA_028858775.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s001 chainType=c00
        shortLabel chimpanzee Chain
        longLabel chimpanzee/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028858775.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_028858775.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_028858775.2Link.bb
        otherDb GCA_028858775.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.634

        track chainSynGCA_028858775.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s001 chainType=c01
        shortLabel chimpanzee synChain
        longLabel chimpanzee/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028858775.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_028858775.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_028858775.2Link.bb
        otherDb GCA_028858775.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.634

        track chainRBestGCA_028858775.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s001 chainType=c02
        shortLabel chimpanzee rbChain
        longLabel chimpanzee/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028858775.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_028858775.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_028858775.2Link.bb
        otherDb GCA_028858775.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.634

        track chainLiftOverGCA_028858775.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s001 chainType=c03
        shortLabel chimpanzee loChain
        longLabel chimpanzee/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028858775.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_028858775.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_028858775.2Link.bb
        otherDb GCA_028858775.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.634

        track chainGCA_029289425.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s002 chainType=c00
        shortLabel pygmy chimpanzee Chain
        longLabel pygmy chimpanzee/GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029289425.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_029289425.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_029289425.2Link.bb
        otherDb GCA_029289425.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.636

        track chainSynGCA_029289425.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s002 chainType=c01
        shortLabel pygmy chimpanzee synChain
        longLabel pygmy chimpanzee/GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029289425.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_029289425.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_029289425.2Link.bb
        otherDb GCA_029289425.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.636

        track chainRBestGCA_029289425.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s002 chainType=c02
        shortLabel pygmy chimpanzee rbChain
        longLabel pygmy chimpanzee/GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029289425.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_029289425.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_029289425.2Link.bb
        otherDb GCA_029289425.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.636

        track chainLiftOverGCA_029289425.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s002 chainType=c03
        shortLabel pygmy chimpanzee loChain
        longLabel pygmy chimpanzee/GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029289425.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_029289425.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_029289425.2Link.bb
        otherDb GCA_029289425.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.636

        track chainHg38
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s003 chainType=c00
        shortLabel Human/hg38 Chain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainHg38.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainHg38Link.bb
        otherDb hg38
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.652

        track chainSynHg38
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s003 chainType=c01
        shortLabel Human/hg38 synChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynHg38.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynHg38Link.bb
        otherDb hg38
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.652

        track chainRBestHg38
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s003 chainType=c02
        shortLabel Human/hg38 rbChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestHg38.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestHg38Link.bb
        otherDb hg38
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.652

        track chainLiftOverHg38
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s003 chainType=c03
        shortLabel Human/hg38 loChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverHg38.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverHg38Link.bb
        otherDb hg38
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.652

        track chainHs1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s004 chainType=c00
        shortLabel Human/hs1 Chain
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainHs1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainHs1Link.bb
        otherDb hs1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.653

        track chainSynHs1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s004 chainType=c01
        shortLabel Human/hs1 synChain
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynHs1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynHs1Link.bb
        otherDb hs1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.653

        track chainRBestHs1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s004 chainType=c02
        shortLabel Human/hs1 rbChain
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestHs1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestHs1Link.bb
        otherDb hs1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.653

        track chainLiftOverHs1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s004 chainType=c03
        shortLabel Human/hs1 loChain
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverHs1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverHs1Link.bb
        otherDb hs1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.653

        track chainGCA_028885655.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s005 chainType=c00
        shortLabel Sumatran orangutan Chain
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_028885655.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.714

        track chainSynGCA_028885655.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s005 chainType=c01
        shortLabel Sumatran orangutan synChain
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_028885655.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.714

        track chainRBestGCA_028885655.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s005 chainType=c02
        shortLabel Sumatran orangutan rbChain
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_028885655.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.714

        track chainLiftOverGCA_028885655.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s005 chainType=c03
        shortLabel Sumatran orangutan loChain
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_028885655.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.714

        track chainGCA_028885625.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s006 chainType=c00
        shortLabel Bornean orangutan Chain
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_028885625.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.728

        track chainSynGCA_028885625.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s006 chainType=c01
        shortLabel Bornean orangutan synChain
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_028885625.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.728

        track chainRBestGCA_028885625.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s006 chainType=c02
        shortLabel Bornean orangutan rbChain
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_028885625.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.728

        track chainLiftOverGCA_028885625.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s006 chainType=c03
        shortLabel Bornean orangutan loChain
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_028885625.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.728

        track chainGCA_029281585.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s007 chainType=c00
        shortLabel western lowland gorilla Chain
        longLabel western lowland gorilla/GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029281585.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_029281585.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_029281585.2Link.bb
        otherDb GCA_029281585.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.731

        track chainSynGCA_029281585.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s007 chainType=c01
        shortLabel western lowland gorilla synChain
        longLabel western lowland gorilla/GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029281585.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_029281585.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_029281585.2Link.bb
        otherDb GCA_029281585.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.731

        track chainRBestGCA_029281585.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s007 chainType=c02
        shortLabel western lowland gorilla rbChain
        longLabel western lowland gorilla/GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029281585.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_029281585.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_029281585.2Link.bb
        otherDb GCA_029281585.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.731

        track chainLiftOverGCA_029281585.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s007 chainType=c03
        shortLabel western lowland gorilla loChain
        longLabel western lowland gorilla/GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_029281585.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_029281585.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_029281585.2Link.bb
        otherDb GCA_029281585.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.731

        track chainGCA_028878055.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s008 chainType=c00
        shortLabel siamang Chain
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_028878055.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 58.040

        track chainSynGCA_028878055.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s008 chainType=c01
        shortLabel siamang synChain
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_028878055.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 58.040

        track chainRBestGCA_028878055.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s008 chainType=c02
        shortLabel siamang rbChain
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_028878055.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 58.040

        track chainLiftOverGCA_028878055.2
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s008 chainType=c03
        shortLabel siamang loChain
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_028878055.2.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 58.040

        track chainGCF_011100555.1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewchain off
        subGroups view=chain species=s009 chainType=c00
        shortLabel white-tufted-ear marmoset Chain
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigChain GCF_011100555.1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCF_011100555.1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainGCF_011100555.1Link.bb
        otherDb GCF_011100555.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 67.540

        track chainSynGCF_011100555.1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewSynTen off
        subGroups view=synten species=s009 chainType=c01
        shortLabel white-tufted-ear marmoset synChain
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigChain GCF_011100555.1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCF_011100555.1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainSynGCF_011100555.1Link.bb
        otherDb GCF_011100555.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 67.540

        track chainRBestGCF_011100555.1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewRBest off
        subGroups view=rbest species=s009 chainType=c02
        shortLabel white-tufted-ear marmoset rbChain
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigChain GCF_011100555.1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCF_011100555.1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainRBestGCF_011100555.1Link.bb
        otherDb GCF_011100555.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 67.540

        track chainLiftOverGCF_011100555.1
        subTrack GCF_020740605.2_mLemCat1.priChainNetViewLiftOver off
        subGroups view=liftover species=s009 chainType=c03
        shortLabel white-tufted-ear marmoset loChain
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigChain GCF_011100555.1
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCF_011100555.1.bb
        linkDataUrl bbi/GCF_020740605.2_mLemCat1.pri.chainLiftOverGCF_011100555.1Link.bb
        otherDb GCF_011100555.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 67.540

    track GCF_020740605.2_mLemCat1.priMafNetViewnet
    shortLabel Nets
    view align
    visibility dense
    subTrack GCF_020740605.2_mLemCat1.priChainNet

        track netGCF_027406575.1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s000 chainType=c04
        shortLabel slow loris mafNet
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCF_027406575.1.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCF_027406575.1.net.summary.bb
        speciesOrder GCF_027406575.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 52.116

        track synNetGCF_027406575.1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s000 chainType=c05
        shortLabel slow loris synNet
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCF_027406575.1.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCF_027406575.1.synNet.summary.bb
        speciesOrder GCF_027406575.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 52.116

        track rbestNetGCF_027406575.1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s000 chainType=c06
        shortLabel slow loris rbestNet
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCF_027406575.1.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCF_027406575.1.rbestNet.summary.bb
        speciesOrder GCF_027406575.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 52.116

        track netGCA_028858775.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s001 chainType=c04
        shortLabel chimpanzee mafNet
        longLabel chimpanzee/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028858775.2.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028858775.2.net.summary.bb
        speciesOrder GCA_028858775.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.634

        track synNetGCA_028858775.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s001 chainType=c05
        shortLabel chimpanzee synNet
        longLabel chimpanzee/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028858775.2.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028858775.2.synNet.summary.bb
        speciesOrder GCA_028858775.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.634

        track rbestNetGCA_028858775.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s001 chainType=c06
        shortLabel chimpanzee rbestNet
        longLabel chimpanzee/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028858775.2.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028858775.2.rbestNet.summary.bb
        speciesOrder GCA_028858775.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.634

        track netGCA_029289425.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s002 chainType=c04
        shortLabel pygmy chimpanzee mafNet
        longLabel pygmy chimpanzee/GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_029289425.2.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_029289425.2.net.summary.bb
        speciesOrder GCA_029289425.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.636

        track synNetGCA_029289425.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s002 chainType=c05
        shortLabel pygmy chimpanzee synNet
        longLabel pygmy chimpanzee/GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_029289425.2.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_029289425.2.synNet.summary.bb
        speciesOrder GCA_029289425.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.636

        track rbestNetGCA_029289425.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s002 chainType=c06
        shortLabel pygmy chimpanzee rbestNet
        longLabel pygmy chimpanzee/GCA_029289425.2_NHGRI_mPanPan1-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_029289425.2.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_029289425.2.rbestNet.summary.bb
        speciesOrder GCA_029289425.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.636

        track netHg38
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s003 chainType=c04
        shortLabel Human/hg38 mafNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.hg38.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.hg38.net.summary.bb
        speciesOrder hg38
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.652

        track synNetHg38
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s003 chainType=c05
        shortLabel Human/hg38 synNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.hg38.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.hg38.synNet.summary.bb
        speciesOrder hg38
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.652

        track rbestNetHg38
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s003 chainType=c06
        shortLabel Human/hg38 rbestNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.hg38.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.hg38.rbestNet.summary.bb
        speciesOrder hg38
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.652

        track netHs1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s004 chainType=c04
        shortLabel Human/hs1 mafNet
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.hs1.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.hs1.net.summary.bb
        speciesOrder hs1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.653

        track synNetHs1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s004 chainType=c05
        shortLabel Human/hs1 synNet
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.hs1.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.hs1.synNet.summary.bb
        speciesOrder hs1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.653

        track rbestNetHs1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s004 chainType=c06
        shortLabel Human/hs1 rbestNet
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.hs1.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.hs1.rbestNet.summary.bb
        speciesOrder hs1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.653

        track netGCA_028885655.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s005 chainType=c04
        shortLabel Sumatran orangutan mafNet
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885655.2.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885655.2.net.summary.bb
        speciesOrder GCA_028885655.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.714

        track synNetGCA_028885655.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s005 chainType=c05
        shortLabel Sumatran orangutan synNet
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885655.2.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885655.2.synNet.summary.bb
        speciesOrder GCA_028885655.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.714

        track rbestNetGCA_028885655.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s005 chainType=c06
        shortLabel Sumatran orangutan rbestNet
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885655.2.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885655.2.rbestNet.summary.bb
        speciesOrder GCA_028885655.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.714

        track netGCA_028885625.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s006 chainType=c04
        shortLabel Bornean orangutan mafNet
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885625.2.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885625.2.net.summary.bb
        speciesOrder GCA_028885625.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.728

        track synNetGCA_028885625.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s006 chainType=c05
        shortLabel Bornean orangutan synNet
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885625.2.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885625.2.synNet.summary.bb
        speciesOrder GCA_028885625.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.728

        track rbestNetGCA_028885625.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s006 chainType=c06
        shortLabel Bornean orangutan rbestNet
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885625.2.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028885625.2.rbestNet.summary.bb
        speciesOrder GCA_028885625.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.728

        track netGCA_029281585.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s007 chainType=c04
        shortLabel western lowland gorilla mafNet
        longLabel western lowland gorilla/GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_029281585.2.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_029281585.2.net.summary.bb
        speciesOrder GCA_029281585.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.731

        track synNetGCA_029281585.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s007 chainType=c05
        shortLabel western lowland gorilla synNet
        longLabel western lowland gorilla/GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_029281585.2.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_029281585.2.synNet.summary.bb
        speciesOrder GCA_029281585.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.731

        track rbestNetGCA_029281585.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s007 chainType=c06
        shortLabel western lowland gorilla rbestNet
        longLabel western lowland gorilla/GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_029281585.2.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_029281585.2.rbestNet.summary.bb
        speciesOrder GCA_029281585.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 56.731

        track netGCA_028878055.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s008 chainType=c04
        shortLabel siamang mafNet
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028878055.2.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028878055.2.net.summary.bb
        speciesOrder GCA_028878055.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 58.040

        track synNetGCA_028878055.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s008 chainType=c05
        shortLabel siamang synNet
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028878055.2.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028878055.2.synNet.summary.bb
        speciesOrder GCA_028878055.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 58.040

        track rbestNetGCA_028878055.2
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s008 chainType=c06
        shortLabel siamang rbestNet
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCA_028878055.2.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCA_028878055.2.rbestNet.summary.bb
        speciesOrder GCA_028878055.2
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 58.040

        track netGCF_011100555.1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s009 chainType=c04
        shortLabel white-tufted-ear marmoset mafNet
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCF_011100555.1.net.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCF_011100555.1.net.summary.bb
        speciesOrder GCF_011100555.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 67.540

        track synNetGCF_011100555.1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s009 chainType=c05
        shortLabel white-tufted-ear marmoset synNet
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCF_011100555.1.synNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCF_011100555.1.synNet.summary.bb
        speciesOrder GCF_011100555.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 67.540

        track rbestNetGCF_011100555.1
        parent GCF_020740605.2_mLemCat1.priMafNetViewnet
        subGroups view=align species=s009 chainType=c06
        shortLabel white-tufted-ear marmoset rbestNet
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_020740605.2_mLemCat1.pri.GCF_011100555.1.rbestNet.bb
        summary bbi/GCF_020740605.2_mLemCat1.pri.GCF_011100555.1.rbestNet.summary.bb
        speciesOrder GCF_011100555.1
        html html/GCF_020740605.2_mLemCat1.pri.chainNet
        priority 67.540


include GCF_020740605.2.userTrackDb.txt