# Assembly name: SC_F0-13Bv2 # Organism name: Daphnia pulicaria (crustaceans) # Isolate: SC F1-1A # Taxid: 35523 # BioSample: SAMN21387128 # BioProject: PRJNA762352 # Submitter: University of Oklahoma # Date: 2022-01-11 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJAGA01 # Assembly method: hifiasm v. 1; LepAnchor v. 1 # Expected final version: no # Genome coverage: 60x # Sequencing technology: PacBio Sequel; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_021234035.2 # RefSeq assembly accession: GCF_021234035.1 # RefSeq assembly and GenBank assemblies identical: yes # Linked assembly: GCA_021234015.2 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_021234045.2 GCF_021234045.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name CHR01 assembled-molecule 1 Chromosome CM038024.1 = NC_060913.1 Primary Assembly 43499656 na CHR02 assembled-molecule 2 Chromosome CM038025.1 = NC_060914.1 Primary Assembly 12938585 na CHR03 assembled-molecule 3 Chromosome CM038026.1 = NC_060915.1 Primary Assembly 13523868 na CHR04 assembled-molecule 4 Chromosome CM038027.1 = NC_060916.1 Primary Assembly 22509579 na CHR05 assembled-molecule 5 Chromosome CM038028.1 = NC_060917.1 Primary Assembly 7288624 na CHR06 assembled-molecule 6 Chromosome CM038029.1 = NC_060918.1 Primary Assembly 24200786 na CHR07 assembled-molecule 7 Chromosome CM038030.1 = NC_060919.1 Primary Assembly 18885472 na CHR08 assembled-molecule 8 Chromosome CM038031.1 = NC_060920.1 Primary Assembly 15869501 na CHR09 assembled-molecule 9 Chromosome CM038032.1 = NC_060921.1 Primary Assembly 4432852 na CHR10 assembled-molecule 10 Chromosome CM038033.1 = NC_060922.1 Primary Assembly 7571162 na CHR11 assembled-molecule 11 Chromosome CM038034.1 = NC_060923.1 Primary Assembly 4626280 na CHR12 assembled-molecule 12 Chromosome CM038035.1 = NC_060924.1 Primary Assembly 3231808 na h1tg000021l unplaced-scaffold na na JAJAGA010000013.1 = NW_025804778.1 Primary Assembly 131682 na h1tg000034l unplaced-scaffold na na JAJAGA010000014.1 = NW_025804779.1 Primary Assembly 43556 na h1tg000042l unplaced-scaffold na na JAJAGA010000015.1 = NW_025804780.1 Primary Assembly 192295 na h1tg000049l unplaced-scaffold na na JAJAGA010000016.1 = NW_025804781.1 Primary Assembly 38708 na h1tg000052l unplaced-scaffold na na JAJAGA010000017.1 = NW_025804782.1 Primary Assembly 186743 na h1tg000056l unplaced-scaffold na na JAJAGA010000018.1 = NW_025804783.1 Primary Assembly 71019 na h1tg000057l unplaced-scaffold na na JAJAGA010000019.1 = NW_025804784.1 Primary Assembly 387193 na h1tg000062l unplaced-scaffold na na JAJAGA010000020.1 = NW_025804785.1 Primary Assembly 207179 na h1tg000064l unplaced-scaffold na na JAJAGA010000021.1 = NW_025804786.1 Primary Assembly 39681 na h1tg000065l unplaced-scaffold na na JAJAGA010000022.1 = NW_025804787.1 Primary Assembly 32328 na h1tg000068l unplaced-scaffold na na JAJAGA010000023.1 = NW_025804788.1 Primary Assembly 419308 na h1tg000071l unplaced-scaffold na na JAJAGA010000024.1 = NW_025804789.1 Primary Assembly 109630 na h1tg000077l unplaced-scaffold na na JAJAGA010000025.1 = NW_025804790.1 Primary Assembly 52333 na h1tg000078l unplaced-scaffold na na JAJAGA010000026.1 = NW_025804791.1 Primary Assembly 27124 na h1tg000079l unplaced-scaffold na na JAJAGA010000027.1 = NW_025804792.1 Primary Assembly 139098 na h1tg000080l unplaced-scaffold na na JAJAGA010000028.1 = NW_025804793.1 Primary Assembly 45078 na h1tg000082l unplaced-scaffold na na JAJAGA010000029.1 = NW_025804794.1 Primary Assembly 46687 na h1tg000083l unplaced-scaffold na na JAJAGA010000030.1 = NW_025804795.1 Primary Assembly 81833 na h1tg000086l unplaced-scaffold na na JAJAGA010000031.1 = NW_025804796.1 Primary Assembly 27778 na h1tg000087l unplaced-scaffold na na JAJAGA010000032.1 = NW_025804797.1 Primary Assembly 102526 na h1tg000089l unplaced-scaffold na na JAJAGA010000033.1 = NW_025804798.1 Primary Assembly 29439 na h1tg000090l unplaced-scaffold na na JAJAGA010000034.1 = NW_025804799.1 Primary Assembly 97519 na h1tg000091l unplaced-scaffold na na JAJAGA010000035.1 = NW_025804800.1 Primary Assembly 34914 na h1tg000092l unplaced-scaffold na na JAJAGA010000036.1 = NW_025804801.1 Primary Assembly 63096 na h1tg000094l unplaced-scaffold na na JAJAGA010000037.1 = NW_025804802.1 Primary Assembly 29694 na h1tg000095l unplaced-scaffold na na JAJAGA010000038.1 = NW_025804803.1 Primary Assembly 38009 na h1tg000096l unplaced-scaffold na na JAJAGA010000039.1 = NW_025804804.1 Primary Assembly 39169 na h1tg000097l unplaced-scaffold na na JAJAGA010000040.1 = NW_025804805.1 Primary Assembly 136049 na h1tg000098l unplaced-scaffold na na JAJAGA010000041.1 = NW_025804806.1 Primary Assembly 13127 na h1tg000099l unplaced-scaffold na na JAJAGA010000042.1 = NW_025804807.1 Primary Assembly 29924 na h1tg000101l unplaced-scaffold na na JAJAGA010000043.1 = NW_025804808.1 Primary Assembly 44833 na h1tg000103l unplaced-scaffold na na JAJAGA010000044.1 = NW_025804809.1 Primary Assembly 33601 na h1tg000104l unplaced-scaffold na na JAJAGA010000045.1 = NW_025804810.1 Primary Assembly 138874 na h1tg000108l unplaced-scaffold na na JAJAGA010000046.1 = NW_025804811.1 Primary Assembly 75517 na h1tg000109l unplaced-scaffold na na JAJAGA010000047.1 = NW_025804812.1 Primary Assembly 54865 na h1tg000110l unplaced-scaffold na na JAJAGA010000048.1 = NW_025804813.1 Primary Assembly 19270 na h1tg000111l unplaced-scaffold na na JAJAGA010000049.1 = NW_025804814.1 Primary Assembly 20752 na h1tg000112l unplaced-scaffold na na JAJAGA010000050.1 = NW_025804815.1 Primary Assembly 33435 na h1tg000113l unplaced-scaffold na na JAJAGA010000051.1 = NW_025804816.1 Primary Assembly 32749 na h1tg000114l unplaced-scaffold na na JAJAGA010000052.1 = NW_025804817.1 Primary Assembly 92582 na h1tg000116l unplaced-scaffold na na JAJAGA010000053.1 = NW_025804818.1 Primary Assembly 33636 na h1tg000117l unplaced-scaffold na na JAJAGA010000054.1 = NW_025804819.1 Primary Assembly 22385 na h1tg000118l unplaced-scaffold na na JAJAGA010000055.1 = NW_025804820.1 Primary Assembly 39645 na h1tg000122l unplaced-scaffold na na JAJAGA010000056.1 = NW_025804821.1 Primary Assembly 40588 na h1tg000126l unplaced-scaffold na na JAJAGA010000057.1 = NW_025804822.1 Primary Assembly 22119 na h1tg000127l unplaced-scaffold na na JAJAGA010000058.1 = NW_025804823.1 Primary Assembly 43599 na h1tg000130l unplaced-scaffold na na JAJAGA010000059.1 = NW_025804824.1 Primary Assembly 24982 na h1tg000131l unplaced-scaffold na na JAJAGA010000060.1 = NW_025804825.1 Primary Assembly 25657 na h1tg000132l unplaced-scaffold na na JAJAGA010000061.1 = NW_025804826.1 Primary Assembly 39933 na h1tg000133l unplaced-scaffold na na JAJAGA010000062.1 = NW_025804827.1 Primary Assembly 37462 na h1tg000135l unplaced-scaffold na na JAJAGA010000063.1 = NW_025804828.1 Primary Assembly 35037 na h1tg000136l unplaced-scaffold na na JAJAGA010000064.1 = NW_025804829.1 Primary Assembly 28156 na h1tg000137l unplaced-scaffold na na JAJAGA010000065.1 = NW_025804830.1 Primary Assembly 79909 na h1tg000138l unplaced-scaffold na na JAJAGA010000066.1 = NW_025804831.1 Primary Assembly 20499 na h1tg000139l unplaced-scaffold na na JAJAGA010000067.1 = NW_025804832.1 Primary Assembly 61952 na h1tg000140l unplaced-scaffold na na JAJAGA010000068.1 = NW_025804833.1 Primary Assembly 64074 na h1tg000142l unplaced-scaffold na na JAJAGA010000069.1 = NW_025804834.1 Primary Assembly 27911 na h1tg000145l unplaced-scaffold na na JAJAGA010000070.1 = NW_025804835.1 Primary Assembly 29137 na h1tg000146l unplaced-scaffold na na JAJAGA010000071.1 = NW_025804836.1 Primary Assembly 27370 na h1tg000147l unplaced-scaffold na na JAJAGA010000072.1 = NW_025804837.1 Primary Assembly 18907 na h1tg000149l unplaced-scaffold na na JAJAGA010000073.1 = NW_025804838.1 Primary Assembly 33444 na h1tg000150l unplaced-scaffold na na JAJAGA010000074.1 = NW_025804839.1 Primary Assembly 37258 na h1tg000151l unplaced-scaffold na na JAJAGA010000075.1 = NW_025804840.1 Primary Assembly 37268 na h1tg000153l unplaced-scaffold na na JAJAGA010000076.1 = NW_025804841.1 Primary Assembly 33369 na h1tg000154l unplaced-scaffold na na JAJAGA010000077.1 = NW_025804842.1 Primary Assembly 29440 na h1tg000155l unplaced-scaffold na na JAJAGA010000078.1 = NW_025804843.1 Primary Assembly 37019 na h1tg000157l unplaced-scaffold na na JAJAGA010000080.1 = NW_025804844.1 Primary Assembly 35058 na h1tg000158l unplaced-scaffold na na JAJAGA010000081.1 = NW_025804845.1 Primary Assembly 29014 na h1tg000159l unplaced-scaffold na na JAJAGA010000082.1 = NW_025804846.1 Primary Assembly 29337 na h1tg000160l unplaced-scaffold na na JAJAGA010000083.1 = NW_025804847.1 Primary Assembly 39948 na h1tg000161l unplaced-scaffold na na JAJAGA010000084.1 = NW_025804848.1 Primary Assembly 17375 na h1tg000162l unplaced-scaffold na na JAJAGA010000085.1 = NW_025804849.1 Primary Assembly 24283 na h1tg000163l unplaced-scaffold na na JAJAGA010000086.1 = NW_025804850.1 Primary Assembly 33044 na h1tg000164l unplaced-scaffold na na JAJAGA010000087.1 = NW_025804851.1 Primary Assembly 18760 na h1tg000165l unplaced-scaffold na na JAJAGA010000088.1 = NW_025804852.1 Primary Assembly 23231 na h1tg000166l unplaced-scaffold na na JAJAGA010000089.1 = NW_025804853.1 Primary Assembly 26737 na h1tg000167l unplaced-scaffold na na JAJAGA010000090.1 = NW_025804854.1 Primary Assembly 24049 na h1tg000168l unplaced-scaffold na na JAJAGA010000091.1 = NW_025804855.1 Primary Assembly 42286 na h1tg000169l unplaced-scaffold na na JAJAGA010000092.1 = NW_025804856.1 Primary Assembly 14878 na h1tg000170l unplaced-scaffold na na JAJAGA010000093.1 = NW_025804857.1 Primary Assembly 26211 na h1tg000171l unplaced-scaffold na na JAJAGA010000094.1 = NW_025804858.1 Primary Assembly 19745 na h1tg000172l unplaced-scaffold na na JAJAGA010000095.1 = NW_025804859.1 Primary Assembly 30791 na h1tg000173l unplaced-scaffold na na JAJAGA010000096.1 = NW_025804860.1 Primary Assembly 18920 na h1tg000174l unplaced-scaffold na na JAJAGA010000097.1 = NW_025804861.1 Primary Assembly 40597 na h1tg000176l unplaced-scaffold na na JAJAGA010000098.1 = NW_025804862.1 Primary Assembly 24584 na h1tg000177l unplaced-scaffold na na JAJAGA010000099.1 = NW_025804863.1 Primary Assembly 30097 na h1tg000178l unplaced-scaffold na na JAJAGA010000100.1 = NW_025804864.1 Primary Assembly 32661 na h1tg000179l unplaced-scaffold na na JAJAGA010000101.1 = NW_025804865.1 Primary Assembly 22864 na h1tg000181l unplaced-scaffold na na JAJAGA010000102.1 = NW_025804866.1 Primary Assembly 22782 na h1tg000182l unplaced-scaffold na na JAJAGA010000103.1 = NW_025804867.1 Primary Assembly 26814 na h1tg000183l unplaced-scaffold na na JAJAGA010000104.1 = NW_025804868.1 Primary Assembly 42021 na h1tg000185l unplaced-scaffold na na JAJAGA010000105.1 = NW_025804869.1 Primary Assembly 18437 na h1tg000186l unplaced-scaffold na na JAJAGA010000106.1 = NW_025804870.1 Primary Assembly 25475 na h1tg000187l unplaced-scaffold na na JAJAGA010000107.1 = NW_025804871.1 Primary Assembly 29840 na h1tg000188l unplaced-scaffold na na JAJAGA010000108.1 = NW_025804872.1 Primary Assembly 34255 na h1tg000189l unplaced-scaffold na na JAJAGA010000109.1 = NW_025804873.1 Primary Assembly 34240 na h1tg000190l unplaced-scaffold na na JAJAGA010000110.1 = NW_025804874.1 Primary Assembly 58748 na h1tg000191l unplaced-scaffold na na JAJAGA010000111.1 = NW_025804875.1 Primary Assembly 26035 na h1tg000194l unplaced-scaffold na na JAJAGA010000112.1 = NW_025804876.1 Primary Assembly 23385 na h1tg000195l unplaced-scaffold na na JAJAGA010000113.1 = NW_025804877.1 Primary Assembly 30155 na h1tg000196l unplaced-scaffold na na JAJAGA010000114.1 = NW_025804878.1 Primary Assembly 23756 na h1tg000197l unplaced-scaffold na na JAJAGA010000115.1 = NW_025804879.1 Primary Assembly 58332 na h1tg000199l unplaced-scaffold na na JAJAGA010000116.1 = NW_025804880.1 Primary Assembly 21916 na h1tg000200l unplaced-scaffold na na JAJAGA010000117.1 = NW_025804881.1 Primary Assembly 18953 na h1tg000201l unplaced-scaffold na na JAJAGA010000118.1 = NW_025804882.1 Primary Assembly 24495 na h1tg000202l unplaced-scaffold na na JAJAGA010000119.1 = NW_025804883.1 Primary Assembly 23986 na h1tg000204l unplaced-scaffold na na JAJAGA010000120.1 = NW_025804884.1 Primary Assembly 29365 na h1tg000205l unplaced-scaffold na na JAJAGA010000121.1 = NW_025804885.1 Primary Assembly 17725 na h1tg000207l unplaced-scaffold na na JAJAGA010000122.1 = NW_025804886.1 Primary Assembly 18682 na h1tg000208l unplaced-scaffold na na JAJAGA010000123.1 = NW_025804887.1 Primary Assembly 45709 na h1tg000210l unplaced-scaffold na na JAJAGA010000124.1 = NW_025804888.1 Primary Assembly 29265 na h1tg000211l unplaced-scaffold na na JAJAGA010000125.1 = NW_025804889.1 Primary Assembly 31621 na h1tg000212l unplaced-scaffold na na JAJAGA010000126.1 = NW_025804890.1 Primary Assembly 35795 na h1tg000213l unplaced-scaffold na na JAJAGA010000127.1 = NW_025804891.1 Primary Assembly 53280 na h1tg000214l unplaced-scaffold na na JAJAGA010000128.1 = NW_025804892.1 Primary Assembly 28812 na h1tg000215l unplaced-scaffold na na JAJAGA010000129.1 = NW_025804893.1 Primary Assembly 16619 na h1tg000217l unplaced-scaffold na na JAJAGA010000130.1 = NW_025804894.1 Primary Assembly 14146 na h1tg000218l unplaced-scaffold na na JAJAGA010000131.1 = NW_025804895.1 Primary Assembly 23972 na h1tg000219l unplaced-scaffold na na JAJAGA010000132.1 = NW_025804896.1 Primary Assembly 49852 na h1tg000220l unplaced-scaffold na na JAJAGA010000133.1 = NW_025804897.1 Primary Assembly 33455 na h1tg000221l unplaced-scaffold na na JAJAGA010000134.1 = NW_025804898.1 Primary Assembly 25862 na h1tg000225l unplaced-scaffold na na JAJAGA010000136.1 = NW_025804899.1 Primary Assembly 42588 na h1tg000226l unplaced-scaffold na na JAJAGA010000137.1 = NW_025804900.1 Primary Assembly 20243 na h1tg000227l unplaced-scaffold na na JAJAGA010000138.1 = NW_025804901.1 Primary Assembly 28439 na h1tg000228l unplaced-scaffold na na JAJAGA010000139.1 = NW_025804902.1 Primary Assembly 24078 na h1tg000230l unplaced-scaffold na na JAJAGA010000141.1 = NW_025804903.1 Primary Assembly 23268 na h1tg000231l unplaced-scaffold na na JAJAGA010000142.1 = NW_025804904.1 Primary Assembly 19434 na h1tg000232l unplaced-scaffold na na JAJAGA010000143.1 = NW_025804905.1 Primary Assembly 26449 na h1tg000233l unplaced-scaffold na na JAJAGA010000144.1 = NW_025804906.1 Primary Assembly 26061 na h1tg000234l unplaced-scaffold na na JAJAGA010000145.1 = NW_025804907.1 Primary Assembly 20428 na h1tg000235l unplaced-scaffold na na JAJAGA010000146.1 = NW_025804908.1 Primary Assembly 27305 na h1tg000237l unplaced-scaffold na na JAJAGA010000148.1 = NW_025804909.1 Primary Assembly 20236 na h1tg000238l unplaced-scaffold na na JAJAGA010000149.1 = NW_025804910.1 Primary Assembly 10573 na h1tg000241l unplaced-scaffold na na JAJAGA010000151.1 = NW_025804911.1 Primary Assembly 14819 na h1tg000242l unplaced-scaffold na na JAJAGA010000152.1 = NW_025804912.1 Primary Assembly 23615 na h1tg000243l unplaced-scaffold na na JAJAGA010000153.1 = NW_025804913.1 Primary Assembly 33239 na h1tg000244l unplaced-scaffold na na JAJAGA010000154.1 = NW_025804914.1 Primary Assembly 42206 na h1tg000245l unplaced-scaffold na na JAJAGA010000155.1 = NW_025804915.1 Primary Assembly 24002 na h1tg000247l unplaced-scaffold na na JAJAGA010000156.1 = NW_025804916.1 Primary Assembly 13338 na h1tg000248l unplaced-scaffold na na JAJAGA010000157.1 = NW_025804917.1 Primary Assembly 25655 na h1tg000249l unplaced-scaffold na na JAJAGA010000158.1 = NW_025804918.1 Primary Assembly 9745 na h1tg000252l unplaced-scaffold na na JAJAGA010000159.1 = NW_025804919.1 Primary Assembly 14335 na h1tg000253l unplaced-scaffold na na JAJAGA010000160.1 = NW_025804920.1 Primary Assembly 17295 na