# Assembly name: DD_fGirMul_XY1 # Organism name: Girardinichthys multiradiatus (bony fishes) # Isolate: DD_20200921_A # Sex: male # Taxid: 208333 # BioSample: SAMN22242658 # BioProject: PRJNA768329 # Submitter: Max Planck Institute of Molecular Cell Biology and Genetics # Date: 2022-02-24 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJATY02 # Assembly method: DAmar v. e25dadb; purge_dups v. 1.0.1; bionano Solve v. 3.5.1; Salsa2 HiC v. 974589f; Longranger v. 2.2.0; pbmm2 v. 1.3.0; gcpp v. 1.9.0-SL-release-8.0.0+1-37-gd7b188d; bcftools v. 1.9; Freebayes v. 1.3.2; bwa v. 0.7.17-r1194; HiGlass v. 0.6.3 # Expected final version: no # Genome coverage: 33.0x # Sequencing technology: PacBio Sequel I CLR; 10X Genomics linked reads; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_021462225.2 # RefSeq assembly accession: GCF_021462225.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_021462235.2 GCF_021462235.1 Primary Assembly ## GCA_021462245.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_9 assembled-molecule 1 Chromosome CM038258.2 = NC_061794.1 Primary Assembly 50037963 na scaffold_6 assembled-molecule 2 Chromosome CM038259.2 = NC_061795.1 Primary Assembly 52165414 na scaffold_11 assembled-molecule 3 Chromosome CM038260.2 = NC_061796.1 Primary Assembly 49293849 na scaffold_4 assembled-molecule 4 Chromosome CM038261.2 = NC_061797.1 Primary Assembly 52808112 na scaffold_3 assembled-molecule 5 Chromosome CM038262.2 = NC_061798.1 Primary Assembly 53524953 na scaffold_12 assembled-molecule 6 Chromosome CM038263.2 = NC_061799.1 Primary Assembly 47419401 na scaffold_10 assembled-molecule 7 Chromosome CM038264.2 = NC_061800.1 Primary Assembly 50015724 na scaffold_17 assembled-molecule 8 Chromosome CM038265.2 = NC_061801.1 Primary Assembly 42987126 na scaffold_8 assembled-molecule 9 Chromosome CM038266.2 = NC_061802.1 Primary Assembly 50424115 na scaffold_22 assembled-molecule 10 Chromosome CM038267.2 = NC_061803.1 Primary Assembly 38405005 na scaffold_15 assembled-molecule 11 Chromosome CM038268.2 = NC_061804.1 Primary Assembly 45397636 na scaffold_2 assembled-molecule 12 Chromosome CM038269.2 = NC_061805.1 Primary Assembly 53588805 na scaffold_16 assembled-molecule 13 Chromosome CM038270.2 = NC_061806.1 Primary Assembly 43759016 na scaffold_13 assembled-molecule 14 Chromosome CM038271.2 = NC_061807.1 Primary Assembly 46654526 na scaffold_21 assembled-molecule 15 Chromosome CM038272.2 = NC_061808.1 Primary Assembly 40858928 na scaffold_23 assembled-molecule 17 Chromosome CM038274.2 = NC_061809.1 Primary Assembly 30793471 na scaffold_5 assembled-molecule 18 Chromosome CM038275.2 = NC_061810.1 Primary Assembly 52235030 na scaffold_19 assembled-molecule 19 Chromosome CM038276.2 = NC_061811.1 Primary Assembly 42509470 na scaffold_1 assembled-molecule 20 Chromosome CM038277.2 = NC_061812.1 Primary Assembly 53595138 na scaffold_18 assembled-molecule 21 Chromosome CM038278.2 = NC_061813.1 Primary Assembly 42588670 na scaffold_14 assembled-molecule 22 Chromosome CM038279.2 = NC_061814.1 Primary Assembly 45871266 na scaffold_7 assembled-molecule 23 Chromosome CM038280.2 = NC_061815.1 Primary Assembly 51973169 na scaffold_24 assembled-molecule 24 Chromosome CM038281.2 = NC_061816.1 Primary Assembly 26817872 na scaffold_20_X assembled-molecule X Chromosome CM039440.1 = NC_061817.1 Primary Assembly 40377249 na scaffold_20_Y assembled-molecule Y Chromosome CM039441.1 = NC_061818.1 Primary Assembly 41696737 na scaffold_25 unplaced-scaffold na na JAJATY020000026.1 = NW_025917678.1 Primary Assembly 451236 na scaffold_26 unplaced-scaffold na na JAJATY020000027.1 = NW_025917679.1 Primary Assembly 201521 na scaffold_27 unplaced-scaffold na na JAJATY020000028.1 = NW_025917680.1 Primary Assembly 184940 na scaffold_28 unplaced-scaffold na na JAJATY020000029.1 = NW_025917681.1 Primary Assembly 183833 na scaffold_29 unplaced-scaffold na na JAJATY020000030.1 = NW_025917682.1 Primary Assembly 140384 na scaffold_30 unplaced-scaffold na na JAJATY020000031.1 = NW_025917683.1 Primary Assembly 133400 na scaffold_31 unplaced-scaffold na na JAJATY020000032.1 = NW_025917684.1 Primary Assembly 127570 na scaffold_32 unplaced-scaffold na na JAJATY020000033.1 = NW_025917685.1 Primary Assembly 126997 na scaffold_33 unplaced-scaffold na na JAJATY020000034.1 = NW_025917686.1 Primary Assembly 122019 na scaffold_34 unplaced-scaffold na na JAJATY020000035.1 = NW_025917687.1 Primary Assembly 119655 na scaffold_35 unplaced-scaffold na na JAJATY020000036.1 = NW_025917688.1 Primary Assembly 118581 na scaffold_36 unplaced-scaffold na na JAJATY020000037.1 = NW_025917689.1 Primary Assembly 114668 na scaffold_37 unplaced-scaffold na na JAJATY020000038.1 = NW_025917690.1 Primary Assembly 105293 na scaffold_38 unplaced-scaffold na na JAJATY020000039.1 = NW_025917691.1 Primary Assembly 104195 na scaffold_39 unplaced-scaffold na na JAJATY020000040.1 = NW_025917692.1 Primary Assembly 100853 na scaffold_40 unplaced-scaffold na na JAJATY020000041.1 = NW_025917693.1 Primary Assembly 97395 na scaffold_41 unplaced-scaffold na na JAJATY020000042.1 = NW_025917694.1 Primary Assembly 93170 na scaffold_42 unplaced-scaffold na na JAJATY020000043.1 = NW_025917695.1 Primary Assembly 90617 na scaffold_43 unplaced-scaffold na na JAJATY020000044.1 = NW_025917696.1 Primary Assembly 85687 na scaffold_44 unplaced-scaffold na na JAJATY020000045.1 = NW_025917697.1 Primary Assembly 84394 na scaffold_45 unplaced-scaffold na na JAJATY020000046.1 = NW_025917698.1 Primary Assembly 78422 na scaffold_46 unplaced-scaffold na na JAJATY020000047.1 = NW_025917699.1 Primary Assembly 77103 na scaffold_47 unplaced-scaffold na na JAJATY020000048.1 = NW_025917700.1 Primary Assembly 75514 na scaffold_48 unplaced-scaffold na na JAJATY020000049.1 = NW_025917701.1 Primary Assembly 74776 na scaffold_49 unplaced-scaffold na na JAJATY020000050.1 = NW_025917702.1 Primary Assembly 72100 na scaffold_50 unplaced-scaffold na na JAJATY020000051.1 = NW_025917703.1 Primary Assembly 70675 na scaffold_51 unplaced-scaffold na na JAJATY020000052.1 = NW_025917704.1 Primary Assembly 66152 na scaffold_52 unplaced-scaffold na na JAJATY020000053.1 = NW_025917705.1 Primary Assembly 64281 na scaffold_53 unplaced-scaffold na na JAJATY020000054.1 = NW_025917706.1 Primary Assembly 63101 na scaffold_54 unplaced-scaffold na na JAJATY020000055.1 = NW_025917707.1 Primary Assembly 61283 na scaffold_55 unplaced-scaffold na na JAJATY020000056.1 = NW_025917708.1 Primary Assembly 60788 na scaffold_56 unplaced-scaffold na na JAJATY020000057.1 = NW_025917709.1 Primary Assembly 59075 na scaffold_57 unplaced-scaffold na na JAJATY020000058.1 = NW_025917710.1 Primary Assembly 58980 na scaffold_58 unplaced-scaffold na na JAJATY020000059.1 = NW_025917711.1 Primary Assembly 56913 na scaffold_59 unplaced-scaffold na na JAJATY020000060.1 = NW_025917712.1 Primary Assembly 54538 na scaffold_60 unplaced-scaffold na na JAJATY020000061.1 = NW_025917713.1 Primary Assembly 53637 na scaffold_61 unplaced-scaffold na na JAJATY020000062.1 = NW_025917714.1 Primary Assembly 53516 na scaffold_62 unplaced-scaffold na na JAJATY020000063.1 = NW_025917715.1 Primary Assembly 48976 na scaffold_63 unplaced-scaffold na na JAJATY020000064.1 = NW_025917716.1 Primary Assembly 48590 na scaffold_64 unplaced-scaffold na na JAJATY020000065.1 = NW_025917717.1 Primary Assembly 46160 na scaffold_65 unplaced-scaffold na na JAJATY020000066.1 = NW_025917718.1 Primary Assembly 45848 na scaffold_66 unplaced-scaffold na na JAJATY020000067.1 = NW_025917719.1 Primary Assembly 39224 na scaffold_67 unplaced-scaffold na na JAJATY020000068.1 = NW_025917720.1 Primary Assembly 20077 na scaffold_68 unplaced-scaffold na na JAJATY020000069.1 = NW_025917721.1 Primary Assembly 19529 na scaffold_69 unplaced-scaffold na na JAJATY020000070.1 = NW_025917722.1 Primary Assembly 18034 na scaffold_70 unplaced-scaffold na na JAJATY020000071.1 = NW_025917723.1 Primary Assembly 15897 na scaffold_71 unplaced-scaffold na na JAJATY020000072.1 = NW_025917724.1 Primary Assembly 15762 na fGirMul1_MT_caa assembled-molecule MT Mitochondrion CM038290.1 <> na non-nuclear 16611 na