# Assembly name: mLynRuf1.p # Organism name: Lynx rufus (bobcat) # Infraspecific name: ecotype=Redwood Valley # Isolate: CCGP_SWC_20201006 # Sex: male # Taxid: 61384 # BioSample: SAMN23391104 # BioProject: PRJNA782957 # Submitter: UCLA # Date: 2022-02-08 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAJSDN01 # Assembly method: HiFiasm v. 0.16.1-r375; purge_dups v. 1.2.5; SALSA v. 2.2 # Expected final version: yes # Genome coverage: 40x # Sequencing technology: PacBio Sequel II; Dovetail OmniC; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_022079265.1 # RefSeq assembly accession: GCF_022079265.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_022079275.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_022079295.1 GCF_022079295.1 Primary Assembly ## GCA_022079305.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JAJSDN010000001.1 = NW_025814823.1 Primary Assembly 239891529 na SCAF_2 unplaced-scaffold na na JAJSDN010000002.1 = NW_025814834.1 Primary Assembly 222829474 na SCAF_3 unplaced-scaffold na na JAJSDN010000003.1 = NW_025814845.1 Primary Assembly 202776522 na SCAF_4 unplaced-scaffold na na JAJSDN010000004.1 = NW_025814856.1 Primary Assembly 170379632 na SCAF_5 unplaced-scaffold na na JAJSDN010000005.1 = NW_025814867.1 Primary Assembly 159285542 na SCAF_6 unplaced-scaffold na na JAJSDN010000006.1 = NW_025814878.1 Primary Assembly 146502401 na SCAF_7 unplaced-scaffold na na JAJSDN010000007.1 = NW_025814889.1 Primary Assembly 142134035 na SCAF_8 unplaced-scaffold na na JAJSDN010000008.1 = NW_025814896.1 Primary Assembly 139661159 na SCAF_9 unplaced-scaffold na na JAJSDN010000009.1 = NW_025814897.1 Primary Assembly 114156902 na SCAF_10 unplaced-scaffold na na JAJSDN010000010.1 = NW_025814824.1 Primary Assembly 88717280 na SCAF_11 unplaced-scaffold na na JAJSDN010000011.1 = NW_025814825.1 Primary Assembly 69381491 na SCAF_12 unplaced-scaffold na na JAJSDN010000012.1 = NW_025814826.1 Primary Assembly 69015974 na SCAF_13 unplaced-scaffold na na JAJSDN010000013.1 = NW_025814827.1 Primary Assembly 68553578 na SCAF_14 unplaced-scaffold na na JAJSDN010000014.1 = NW_025814828.1 Primary Assembly 66512669 na SCAF_15 unplaced-scaffold na na JAJSDN010000015.1 = NW_025814829.1 Primary Assembly 64583149 na SCAF_16 unplaced-scaffold na na JAJSDN010000016.1 = NW_025814830.1 Primary Assembly 58073851 na SCAF_17 unplaced-scaffold na na JAJSDN010000017.1 = NW_025814831.1 Primary Assembly 51420216 na SCAF_18 unplaced-scaffold na na JAJSDN010000018.1 = NW_025814832.1 Primary Assembly 42314016 na SCAF_19 unplaced-scaffold na na JAJSDN010000019.1 = NW_025814833.1 Primary Assembly 37541832 na SCAF_20 unplaced-scaffold na na JAJSDN010000020.1 = NW_025814835.1 Primary Assembly 31023372 na SCAF_21 unplaced-scaffold na na JAJSDN010000021.1 = NW_025814836.1 Primary Assembly 28048822 na SCAF_22 unplaced-scaffold na na JAJSDN010000022.1 = NW_025814837.1 Primary Assembly 24335265 na SCAF_23 unplaced-scaffold na na JAJSDN010000023.1 = NW_025814838.1 Primary Assembly 22888409 na SCAF_24 unplaced-scaffold na na JAJSDN010000024.1 = NW_025814839.1 Primary Assembly 22484630 na SCAF_25 unplaced-scaffold na na JAJSDN010000025.1 = NW_025814840.1 Primary Assembly 19698030 na SCAF_26 unplaced-scaffold na na JAJSDN010000026.1 = NW_025814841.1 Primary Assembly 16583624 na SCAF_27 unplaced-scaffold na na JAJSDN010000027.1 = NW_025814842.1 Primary Assembly 16544566 na SCAF_28 unplaced-scaffold na na JAJSDN010000028.1 = NW_025814843.1 Primary Assembly 12961163 na SCAF_29 unplaced-scaffold na na JAJSDN010000029.1 = NW_025814844.1 Primary Assembly 10373096 na SCAF_30 unplaced-scaffold na na JAJSDN010000030.1 = NW_025814846.1 Primary Assembly 9383641 na SCAF_31 unplaced-scaffold na na JAJSDN010000031.1 = NW_025814847.1 Primary Assembly 5880251 na SCAF_32 unplaced-scaffold na na JAJSDN010000032.1 = NW_025814848.1 Primary Assembly 5449398 na SCAF_33 unplaced-scaffold na na JAJSDN010000033.1 = NW_025814849.1 Primary Assembly 4267862 na SCAF_34 unplaced-scaffold na na JAJSDN010000034.1 = NW_025814850.1 Primary Assembly 4206286 na SCAF_35 unplaced-scaffold na na JAJSDN010000035.1 = NW_025814851.1 Primary Assembly 4082223 na SCAF_36 unplaced-scaffold na na JAJSDN010000036.1 = NW_025814852.1 Primary Assembly 3976664 na SCAF_37 unplaced-scaffold na na JAJSDN010000037.1 = NW_025814853.1 Primary Assembly 3811327 na SCAF_38 unplaced-scaffold na na JAJSDN010000038.1 = NW_025814854.1 Primary Assembly 3321607 na SCAF_39 unplaced-scaffold na na JAJSDN010000039.1 = NW_025814855.1 Primary Assembly 3061606 na SCAF_40 unplaced-scaffold na na JAJSDN010000040.1 = NW_025814857.1 Primary Assembly 3047516 na SCAF_41 unplaced-scaffold na na JAJSDN010000041.1 = NW_025814858.1 Primary Assembly 3018818 na SCAF_42 unplaced-scaffold na na JAJSDN010000042.1 = NW_025814859.1 Primary Assembly 2399416 na SCAF_43 unplaced-scaffold na na JAJSDN010000043.1 = NW_025814860.1 Primary Assembly 2393597 na SCAF_44 unplaced-scaffold na na JAJSDN010000044.1 = NW_025814861.1 Primary Assembly 2207159 na SCAF_45 unplaced-scaffold na na JAJSDN010000045.1 = NW_025814862.1 Primary Assembly 1814148 na SCAF_46 unplaced-scaffold na na JAJSDN010000046.1 = NW_025814863.1 Primary Assembly 1749922 na SCAF_47 unplaced-scaffold na na JAJSDN010000047.1 = NW_025814864.1 Primary Assembly 1430253 na SCAF_48 unplaced-scaffold na na JAJSDN010000048.1 = NW_025814865.1 Primary Assembly 1412593 na SCAF_49 unplaced-scaffold na na JAJSDN010000049.1 = NW_025814866.1 Primary Assembly 1366484 na SCAF_50 unplaced-scaffold na na JAJSDN010000050.1 = NW_025814868.1 Primary Assembly 1328807 na SCAF_51 unplaced-scaffold na na JAJSDN010000051.1 = NW_025814869.1 Primary Assembly 1322611 na SCAF_52 unplaced-scaffold na na JAJSDN010000052.1 = NW_025814870.1 Primary Assembly 1272903 na SCAF_53 unplaced-scaffold na na JAJSDN010000053.1 = NW_025814871.1 Primary Assembly 1096447 na SCAF_54 unplaced-scaffold na na JAJSDN010000054.1 = NW_025814872.1 Primary Assembly 1078383 na SCAF_55 unplaced-scaffold na na JAJSDN010000055.1 = NW_025814873.1 Primary Assembly 1038290 na SCAF_56 unplaced-scaffold na na JAJSDN010000056.1 = NW_025814874.1 Primary Assembly 907863 na SCAF_57 unplaced-scaffold na na JAJSDN010000057.1 = NW_025814875.1 Primary Assembly 632646 na SCAF_58 unplaced-scaffold na na JAJSDN010000058.1 = NW_025814876.1 Primary Assembly 600899 na SCAF_59 unplaced-scaffold na na JAJSDN010000059.1 = NW_025814877.1 Primary Assembly 463995 na SCAF_60 unplaced-scaffold na na JAJSDN010000060.1 = NW_025814879.1 Primary Assembly 382240 na SCAF_61 unplaced-scaffold na na JAJSDN010000061.1 = NW_025814880.1 Primary Assembly 350672 na SCAF_62 unplaced-scaffold na na JAJSDN010000062.1 = NW_025814881.1 Primary Assembly 333722 na SCAF_63 unplaced-scaffold na na JAJSDN010000063.1 = NW_025814882.1 Primary Assembly 327166 na SCAF_64 unplaced-scaffold na na JAJSDN010000064.1 = NW_025814883.1 Primary Assembly 248427 na SCAF_65 unplaced-scaffold na na JAJSDN010000065.1 = NW_025814884.1 Primary Assembly 166813 na SCAF_66 unplaced-scaffold na na JAJSDN010000066.1 = NW_025814885.1 Primary Assembly 151166 na SCAF_67 unplaced-scaffold na na JAJSDN010000067.1 = NW_025814886.1 Primary Assembly 110878 na SCAF_68 unplaced-scaffold na na JAJSDN010000068.1 = NW_025814887.1 Primary Assembly 95320 na SCAF_69 unplaced-scaffold na na JAJSDN010000069.1 = NW_025814888.1 Primary Assembly 89258 na SCAF_70 unplaced-scaffold na na JAJSDN010000070.1 = NW_025814890.1 Primary Assembly 81142 na SCAF_71 unplaced-scaffold na na JAJSDN010000071.1 = NW_025814891.1 Primary Assembly 79240 na SCAF_72 unplaced-scaffold na na JAJSDN010000072.1 = NW_025814892.1 Primary Assembly 41288 na SCAF_73 unplaced-scaffold na na JAJSDN010000073.1 = NW_025814893.1 Primary Assembly 34868 na SCAF_74 unplaced-scaffold na na JAJSDN010000074.1 = NW_025814894.1 Primary Assembly 29135 na SCAF_75 unplaced-scaffold na na JAJSDN010000075.1 = NW_025814895.1 Primary Assembly 22195 na mtDNA assembled-molecule MT Mitochondrion CM039064.1 <> na non-nuclear 17097 na