# Assembly name: HSTE1.2 # Organism name: Hippoglossus stenolepis (Pacific halibut) # Isolate: QCI-W04-F060 # Sex: female # Taxid: 195615 # BioSample: SAMN29538134 # BioProject: PRJNA622249 # Submitter: International Pacific Halibut Commission # Date: 2022-03-10 # Assembly type: haploid # Release type: minor # Assembly level: Chromosome # Genome representation: full # WGS project: JAKRZP01 # Assembly method: Flye v. 2.9; Juicer v. 1.6; 3D-DNA v. 201008 # Expected final version: yes # Genome coverage: 91.0x # Sequencing technology: Oxford Nanopore GridION; Oxford Nanopore PromethION; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_022539355.2 # RefSeq assembly accession: GCF_022539355.2 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_022539375.2 GCF_022539375.2 Primary Assembly ## GCF_013373725.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HiC_scaffold_1 assembled-molecule 1 Chromosome CM039694.1 = NC_061483.1 Primary Assembly 32845235 na HiC_scaffold_2 assembled-molecule 2 Chromosome CM039695.1 = NC_061484.1 Primary Assembly 32262650 na HiC_scaffold_3 assembled-molecule 3 Chromosome CM039696.1 = NC_061485.1 Primary Assembly 31235357 na HiC_scaffold_4 assembled-molecule 4 Chromosome CM039697.1 = NC_061486.1 Primary Assembly 28897756 na HiC_scaffold_5 assembled-molecule 5 Chromosome CM039698.1 = NC_061487.1 Primary Assembly 29170857 na HiC_scaffold_6 assembled-molecule 6 Chromosome CM039699.1 = NC_061488.1 Primary Assembly 28229454 na HiC_scaffold_7 assembled-molecule 7 Chromosome CM039700.1 = NC_061489.1 Primary Assembly 28174910 na HiC_scaffold_8 assembled-molecule 8 Chromosome CM039701.1 = NC_061490.1 Primary Assembly 27367920 na HiC_scaffold_9 assembled-molecule 9 Chromosome CM039702.1 = NC_061491.1 Primary Assembly 29329910 na HiC_scaffold_10 assembled-molecule 10 Chromosome CM039703.1 = NC_061492.1 Primary Assembly 27288303 na HiC_scaffold_11 assembled-molecule 11 Chromosome CM039704.1 = NC_061493.1 Primary Assembly 25468064 na HiC_scaffold_12 assembled-molecule 12 Chromosome CM039705.1 = NC_061494.1 Primary Assembly 25132731 na HiC_scaffold_13 assembled-molecule 13 Chromosome CM039706.1 = NC_061495.1 Primary Assembly 24770608 na HiC_scaffold_14 assembled-molecule 14 Chromosome CM039707.1 = NC_061496.1 Primary Assembly 28479552 na HiC_scaffold_15 assembled-molecule 15 Chromosome CM039708.1 = NC_061497.1 Primary Assembly 25155020 na HiC_scaffold_16 assembled-molecule 16 Chromosome CM039709.1 = NC_061498.1 Primary Assembly 23268637 na HiC_scaffold_17 assembled-molecule 17 Chromosome CM039710.1 = NC_061499.1 Primary Assembly 22875723 na HiC_scaffold_18 assembled-molecule 18 Chromosome CM039711.1 = NC_061500.1 Primary Assembly 21182577 na HiC_scaffold_19 assembled-molecule 19 Chromosome CM039712.1 = NC_061501.1 Primary Assembly 20810600 na HiC_scaffold_20 assembled-molecule 20 Chromosome CM039713.1 = NC_061502.1 Primary Assembly 21255706 na HiC_scaffold_21 assembled-molecule 21 Chromosome CM039714.1 = NC_061503.1 Primary Assembly 20593300 na HiC_scaffold_22 assembled-molecule 22 Chromosome CM039715.1 = NC_061504.1 Primary Assembly 18680547 na HiC_scaffold_23 assembled-molecule 23 Chromosome CM039716.1 = NC_061505.1 Primary Assembly 17159251 na HiC_scaffold_24 assembled-molecule 24 Chromosome CM039717.1 = NC_061506.1 Primary Assembly 11267222 na HiC_scaffold_25 unplaced-scaffold na na JAKRZP010000025.1 = NW_025899746.1 Primary Assembly 458395 na HiC_scaffold_26 unplaced-scaffold na na JAKRZP010000026.1 = NW_025899747.1 Primary Assembly 32022 na HiC_scaffold_27 unplaced-scaffold na na JAKRZP010000027.1 = NW_025899748.1 Primary Assembly 786 na HiC_scaffold_28 unplaced-scaffold na na JAKRZP010000028.1 = NW_025899749.1 Primary Assembly 255824 na HiC_scaffold_29 unplaced-scaffold na na JAKRZP010000029.1 = NW_025899750.1 Primary Assembly 3031 na HiC_scaffold_30 unplaced-scaffold na na JAKRZP010000030.1 = NW_025899751.1 Primary Assembly 5290 na HiC_scaffold_31 unplaced-scaffold na na JAKRZP010000031.1 = NW_025899752.1 Primary Assembly 3054 na HiC_scaffold_32 unplaced-scaffold na na JAKRZP010000032.1 = NW_025899753.1 Primary Assembly 48340 na HiC_scaffold_33 unplaced-scaffold na na JAKRZP010000033.1 = NW_025899754.1 Primary Assembly 45079 na HiC_scaffold_34 unplaced-scaffold na na JAKRZP010000034.1 = NW_025899755.1 Primary Assembly 25155 na HiC_scaffold_35 unplaced-scaffold na na JAKRZP010000035.1 = NW_025899756.1 Primary Assembly 113933 na HiC_scaffold_36 unplaced-scaffold na na JAKRZP010000036.1 = NW_025899757.1 Primary Assembly 1843 na HiC_scaffold_37 unplaced-scaffold na na JAKRZP010000037.1 = NW_025899758.1 Primary Assembly 82466 na HiC_scaffold_38 unplaced-scaffold na na JAKRZP010000038.1 = NW_025899759.1 Primary Assembly 4916 na HiC_scaffold_39 unplaced-scaffold na na JAKRZP010000039.1 = NW_025899760.1 Primary Assembly 71054 na HiC_scaffold_40 unplaced-scaffold na na JAKRZP010000040.1 = NW_025899761.1 Primary Assembly 8568 na HiC_scaffold_41 unplaced-scaffold na na JAKRZP010000041.1 = NW_025899762.1 Primary Assembly 11567 na HiC_scaffold_42 unplaced-scaffold na na JAKRZP010000042.1 = NW_025899763.1 Primary Assembly 6375 na HiC_scaffold_43 unplaced-scaffold na na JAKRZP010000043.1 = NW_025899764.1 Primary Assembly 53904 na HiC_scaffold_46 unplaced-scaffold na na JAKRZP010000046.1 = NW_025899767.1 Primary Assembly 3932 na HiC_scaffold_47 unplaced-scaffold na na JAKRZP010000047.1 = NW_025899768.1 Primary Assembly 2857 na HiC_scaffold_48 unplaced-scaffold na na JAKRZP010000048.1 = NW_025899769.1 Primary Assembly 2018 na HiC_scaffold_49 unplaced-scaffold na na JAKRZP010000049.1 = NW_025899770.1 Primary Assembly 1484 na HiC_scaffold_50 unplaced-scaffold na na JAKRZP010000050.1 = NW_025899771.1 Primary Assembly 996 na HiC_scaffold_51 unplaced-scaffold na na JAKRZP010000051.1 = NW_025899772.1 Primary Assembly 680 na HiC_scaffold_52 unplaced-scaffold na na JAKRZP010000052.1 = NW_025899773.1 Primary Assembly 673 na HiC_scaffold_53 unplaced-scaffold na na JAKRZP010000053.1 = NW_025899774.1 Primary Assembly 633 na HiC_scaffold_54 unplaced-scaffold na na JAKRZP010000054.1 = NW_025899775.1 Primary Assembly 582 na MT assembled-molecule MT Mitochondrion na <> NC_009710.1 non-nuclear 17841 na