# Assembly name: bLagMut1 primary # Organism name: Lagopus muta (rock ptarmigan) # Isolate: bLagMut1 # Sex: female # Taxid: 64668 # BioSample: SAMN25144835 # BioProject: PRJNA836583 # Submitter: Vertebrate Genomes Project # Date: 2022-05-12 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAMCCT01 # Assembly method: hifiasm v. 0.15.1-r334; Minimap2 v. 0.15.1-r334; purge_dups v. 1.2.5; salsa v. 2.3 # Expected final version: yes # Genome coverage: 57.75x # Sequencing technology: PacBio Sequel II HiFi; Dovetail genomics Hi-C; Illumina NovaSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_023343835.1 # RefSeq assembly accession: GCF_023343835.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_023344045.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_023343995.1 GCF_023343995.1 Primary Assembly ## GCF_023941095.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM041476.1 = NC_064433.1 Primary Assembly 194907523 na SUPER_2 assembled-molecule 2 Chromosome CM041477.1 = NC_064434.1 Primary Assembly 110440899 na SUPER_3 assembled-molecule 3 Chromosome CM041478.1 = NC_064435.1 Primary Assembly 94578995 na SUPER_4 assembled-molecule 4 Chromosome CM041479.1 = NC_064436.1 Primary Assembly 71229700 na SUPER_5 assembled-molecule 5 Chromosome CM041480.1 = NC_064437.1 Primary Assembly 65877600 na SUPER_6 assembled-molecule 6 Chromosome CM041481.1 = NC_064438.1 Primary Assembly 59591877 na SUPER_7 assembled-molecule 7 Chromosome CM041482.1 = NC_064439.1 Primary Assembly 51912046 na SUPER_8 assembled-molecule 8 Chromosome CM041483.1 = NC_064440.1 Primary Assembly 36747764 na SUPER_9 assembled-molecule 9 Chromosome CM041484.1 = NC_064441.1 Primary Assembly 23253069 na SUPER_10 assembled-molecule 10 Chromosome CM041485.1 = NC_064442.1 Primary Assembly 19919154 na SUPER_11 assembled-molecule 11 Chromosome CM041486.1 = NC_064443.1 Primary Assembly 19850105 na SUPER_12 assembled-molecule 12 Chromosome CM041487.1 = NC_064444.1 Primary Assembly 19302870 na SUPER_13 assembled-molecule 13 Chromosome CM041488.1 = NC_064445.1 Primary Assembly 19049105 na SUPER_14 assembled-molecule 14 Chromosome CM041489.1 = NC_064446.1 Primary Assembly 17971384 na SUPER_15 assembled-molecule 15 Chromosome CM041490.1 = NC_064447.1 Primary Assembly 15347146 na SUPER_16 assembled-molecule 16 Chromosome CM041491.1 = NC_064448.1 Primary Assembly 14683214 na SUPER_17 assembled-molecule 17 Chromosome CM041492.1 = NC_064449.1 Primary Assembly 12688670 na SUPER_18 assembled-molecule 18 Chromosome CM041493.1 = NC_064450.1 Primary Assembly 10896487 na SUPER_19 assembled-molecule 19 Chromosome CM041494.1 = NC_064451.1 Primary Assembly 10457170 na SUPER_20 assembled-molecule 20 Chromosome CM041495.1 = NC_064452.1 Primary Assembly 10248382 na SUPER_21 assembled-molecule 21 Chromosome CM041496.1 = NC_064453.1 Primary Assembly 6977006 na SUPER_22 assembled-molecule 22 Chromosome CM041497.1 = NC_064454.1 Primary Assembly 6675088 na SUPER_23 assembled-molecule 23 Chromosome CM041498.1 = NC_064455.1 Primary Assembly 6107212 na SUPER_24 assembled-molecule 24 Chromosome CM041499.1 = NC_064456.1 Primary Assembly 5878797 na SUPER_25 assembled-molecule 25 Chromosome CM041500.1 = NC_064457.1 Primary Assembly 5130816 na SUPER_26 assembled-molecule 26 Chromosome CM041501.1 = NC_064458.1 Primary Assembly 4861958 na SUPER_27 assembled-molecule 27 Chromosome CM041502.1 = NC_064459.1 Primary Assembly 4687828 na SUPER_28 assembled-molecule 28 Chromosome CM041503.1 = NC_064460.1 Primary Assembly 3263872 na SUPER_29 assembled-molecule 29 Chromosome CM041504.1 = NC_064461.1 Primary Assembly 2525746 na SUPER_30 assembled-molecule 30 Chromosome CM041505.1 = NC_064462.1 Primary Assembly 1991433 na SUPER_31 assembled-molecule 31 Chromosome CM041506.1 = NC_064463.1 Primary Assembly 1026180 na SUPER_32 assembled-molecule 32 Chromosome CM041507.1 = NC_064464.1 Primary Assembly 1008941 na SUPER_33 assembled-molecule 33 Chromosome CM041508.1 = NC_064465.1 Primary Assembly 836365 na SUPER_34 assembled-molecule 34 Chromosome CM041509.1 = NC_064466.1 Primary Assembly 699225 na SUPER_35 assembled-molecule 35 Chromosome CM041510.1 = NC_064467.1 Primary Assembly 196355 na SUPER_36 assembled-molecule 36 Chromosome CM041511.1 = NC_064468.1 Primary Assembly 396253 na SUPER_37 assembled-molecule 37 Chromosome CM041512.1 = NC_064469.1 Primary Assembly 102085 na SUPER_38 assembled-molecule 38 Chromosome CM041513.1 = NC_064470.1 Primary Assembly 54903 na SUPER_W assembled-molecule W Chromosome CM041514.1 = NC_064471.1 Primary Assembly 6802803 na SUPER_Z assembled-molecule Z Chromosome CM041515.1 = NC_064472.1 Primary Assembly 75337723 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JAMCCT010000002.1 = NW_026040150.1 Primary Assembly 230602 na SUPER_3_unloc_2 unlocalized-scaffold 3 Chromosome JAMCCT010000003.1 = NW_026040151.1 Primary Assembly 79560 na SUPER_3_unloc_3 unlocalized-scaffold 3 Chromosome JAMCCT010000004.1 = NW_026040152.1 Primary Assembly 45704 na SUPER_29_unloc_1 unlocalized-scaffold 29 Chromosome JAMCCT010000038.1 = NW_026040153.1 Primary Assembly 42137 na SUPER_29_unloc_2 unlocalized-scaffold 29 Chromosome JAMCCT010000039.1 = NW_026040154.1 Primary Assembly 36805 na SUPER_29_unloc_3 unlocalized-scaffold 29 Chromosome JAMCCT010000040.1 = NW_026040155.1 Primary Assembly 31930 na SUPER_29_unloc_4 unlocalized-scaffold 29 Chromosome JAMCCT010000041.1 = NW_026040156.1 Primary Assembly 29064 na SUPER_34_unloc_1 unlocalized-scaffold 34 Chromosome JAMCCT010000044.1 = NW_026040157.1 Primary Assembly 101031 na SUPER_35_unloc_1 unlocalized-scaffold 35 Chromosome JAMCCT010000048.1 = NW_026040158.1 Primary Assembly 106508 na SUPER_35_unloc_2 unlocalized-scaffold 35 Chromosome JAMCCT010000049.1 = NW_026040159.1 Primary Assembly 100720 na SUPER_35_unloc_3 unlocalized-scaffold 35 Chromosome JAMCCT010000050.1 = NW_026040160.1 Primary Assembly 52953 na SUPER_35_unloc_4 unlocalized-scaffold 35 Chromosome JAMCCT010000051.1 = NW_026040161.1 Primary Assembly 49289 na SUPER_37_unloc_1 unlocalized-scaffold 37 Chromosome JAMCCT010000053.1 = NW_026040162.1 Primary Assembly 68394 na SUPER_37_unloc_2 unlocalized-scaffold 37 Chromosome JAMCCT010000054.1 = NW_026040163.1 Primary Assembly 58505 na SUPER_37_unloc_3 unlocalized-scaffold 37 Chromosome JAMCCT010000055.1 = NW_026040164.1 Primary Assembly 53550 na SUPER_37_unloc_4 unlocalized-scaffold 37 Chromosome JAMCCT010000056.1 = NW_026040165.1 Primary Assembly 40729 na SUPER_37_unloc_5 unlocalized-scaffold 37 Chromosome JAMCCT010000057.1 = NW_026040166.1 Primary Assembly 38591 na SUPER_38_unloc_1 unlocalized-scaffold 38 Chromosome JAMCCT010000059.1 = NW_026040167.1 Primary Assembly 36995 na SUPER_W_unloc_1 unlocalized-scaffold W Chromosome JAMCCT010000014.1 = NW_026040168.1 Primary Assembly 3177251 na scaffold_154 unplaced-scaffold na na JAMCCT010000060.1 = NW_026040204.1 Primary Assembly 54267 na scaffold_116 unplaced-scaffold na na JAMCCT010000061.1 = NW_026040183.1 Primary Assembly 129854 na scaffold_101 unplaced-scaffold na na JAMCCT010000062.1 = NW_026040174.1 Primary Assembly 225294 na scaffold_139 unplaced-scaffold na na JAMCCT010000063.1 = NW_026040193.1 Primary Assembly 67777 na scaffold_158 unplaced-scaffold na na JAMCCT010000064.1 = NW_026040206.1 Primary Assembly 52043 na scaffold_160 unplaced-scaffold na na JAMCCT010000065.1 = NW_026040208.1 Primary Assembly 51507 na scaffold_161 unplaced-scaffold na na JAMCCT010000066.1 = NW_026040209.1 Primary Assembly 50597 na scaffold_162 unplaced-scaffold na na JAMCCT010000067.1 = NW_026040210.1 Primary Assembly 50411 na scaffold_169 unplaced-scaffold na na JAMCCT010000068.1 = NW_026040216.1 Primary Assembly 48790 na scaffold_174 unplaced-scaffold na na JAMCCT010000069.1 = NW_026040219.1 Primary Assembly 45206 na scaffold_175 unplaced-scaffold na na JAMCCT010000070.1 = NW_026040220.1 Primary Assembly 45079 na scaffold_176 unplaced-scaffold na na JAMCCT010000071.1 = NW_026040221.1 Primary Assembly 44479 na scaffold_171 unplaced-scaffold na na JAMCCT010000072.1 = NW_026040218.1 Primary Assembly 47776 na scaffold_145 unplaced-scaffold na na JAMCCT010000073.1 = NW_026040197.1 Primary Assembly 61016 na scaffold_196 unplaced-scaffold na na JAMCCT010000074.1 = NW_026040238.1 Primary Assembly 37860 na scaffold_184 unplaced-scaffold na na JAMCCT010000075.1 = NW_026040228.1 Primary Assembly 41085 na scaffold_108 unplaced-scaffold na na JAMCCT010000076.1 = NW_026040177.1 Primary Assembly 156070 na scaffold_111 unplaced-scaffold na na JAMCCT010000077.1 = NW_026040179.1 Primary Assembly 147982 na scaffold_114 unplaced-scaffold na na JAMCCT010000078.1 = NW_026040181.1 Primary Assembly 130836 na scaffold_115 unplaced-scaffold na na JAMCCT010000079.1 = NW_026040182.1 Primary Assembly 129388 na scaffold_33a unplaced-scaffold na na JAMCCT010000080.1 = NW_026040268.1 Primary Assembly 479051 na scaffold_117 unplaced-scaffold na na JAMCCT010000081.1 = NW_026040184.1 Primary Assembly 120437 na scaffold_120 unplaced-scaffold na na JAMCCT010000082.1 = NW_026040186.1 Primary Assembly 116222 na scaffold_121 unplaced-scaffold na na JAMCCT010000083.1 = NW_026040187.1 Primary Assembly 107566 na scaffold_127 unplaced-scaffold na na JAMCCT010000084.1 = NW_026040190.1 Primary Assembly 101675 na scaffold_131 unplaced-scaffold na na JAMCCT010000085.1 = NW_026040191.1 Primary Assembly 96044 na scaffold_142 unplaced-scaffold na na JAMCCT010000086.1 = NW_026040194.1 Primary Assembly 65037 na scaffold_143 unplaced-scaffold na na JAMCCT010000087.1 = NW_026040195.1 Primary Assembly 62521 na scaffold_144 unplaced-scaffold na na JAMCCT010000088.1 = NW_026040196.1 Primary Assembly 62236 na scaffold_147 unplaced-scaffold na na JAMCCT010000089.1 = NW_026040198.1 Primary Assembly 57228 na scaffold_149 unplaced-scaffold na na JAMCCT010000090.1 = NW_026040200.1 Primary Assembly 55432 na scaffold_150 unplaced-scaffold na na JAMCCT010000091.1 = NW_026040201.1 Primary Assembly 55289 na scaffold_151 unplaced-scaffold na na JAMCCT010000092.1 = NW_026040202.1 Primary Assembly 55061 na scaffold_153 unplaced-scaffold na na JAMCCT010000093.1 = NW_026040203.1 Primary Assembly 54783 na scaffold_155 unplaced-scaffold na na JAMCCT010000094.1 = NW_026040205.1 Primary Assembly 53892 na scaffold_163 unplaced-scaffold na na JAMCCT010000095.1 = NW_026040211.1 Primary Assembly 50405 na scaffold_164 unplaced-scaffold na na JAMCCT010000096.1 = NW_026040212.1 Primary Assembly 50329 na scaffold_165 unplaced-scaffold na na JAMCCT010000097.1 = NW_026040213.1 Primary Assembly 49515 na scaffold_166 unplaced-scaffold na na JAMCCT010000098.1 = NW_026040214.1 Primary Assembly 49478 na scaffold_167 unplaced-scaffold na na JAMCCT010000099.1 = NW_026040215.1 Primary Assembly 49431 na scaffold_170 unplaced-scaffold na na JAMCCT010000100.1 = NW_026040217.1 Primary Assembly 48295 na scaffold_177 unplaced-scaffold na na JAMCCT010000101.1 = NW_026040222.1 Primary Assembly 44197 na scaffold_178 unplaced-scaffold na na JAMCCT010000102.1 = NW_026040223.1 Primary Assembly 43684 na scaffold_179 unplaced-scaffold na na JAMCCT010000103.1 = NW_026040224.1 Primary Assembly 42865 na scaffold_181 unplaced-scaffold na na JAMCCT010000104.1 = NW_026040225.1 Primary Assembly 41420 na scaffold_182 unplaced-scaffold na na JAMCCT010000105.1 = NW_026040226.1 Primary Assembly 41376 na scaffold_183 unplaced-scaffold na na JAMCCT010000106.1 = NW_026040227.1 Primary Assembly 41145 na scaffold_187 unplaced-scaffold na na JAMCCT010000107.1 = NW_026040230.1 Primary Assembly 40655 na scaffold_188 unplaced-scaffold na na JAMCCT010000108.1 = NW_026040231.1 Primary Assembly 39763 na scaffold_189 unplaced-scaffold na na JAMCCT010000109.1 = NW_026040232.1 Primary Assembly 39633 na scaffold_190 unplaced-scaffold na na JAMCCT010000110.1 = NW_026040233.1 Primary Assembly 39419 na scaffold_191 unplaced-scaffold na na JAMCCT010000111.1 = NW_026040234.1 Primary Assembly 39000 na scaffold_193 unplaced-scaffold na na JAMCCT010000112.1 = NW_026040235.1 Primary Assembly 38513 na scaffold_194 unplaced-scaffold na na JAMCCT010000113.1 = NW_026040236.1 Primary Assembly 38108 na scaffold_195 unplaced-scaffold na na JAMCCT010000114.1 = NW_026040237.1 Primary Assembly 37923 na scaffold_197 unplaced-scaffold na na JAMCCT010000115.1 = NW_026040239.1 Primary Assembly 37786 na scaffold_198 unplaced-scaffold na na JAMCCT010000116.1 = NW_026040240.1 Primary Assembly 37187 na scaffold_201 unplaced-scaffold na na JAMCCT010000117.1 = NW_026040241.1 Primary Assembly 36566 na scaffold_202 unplaced-scaffold na na JAMCCT010000118.1 = NW_026040242.1 Primary Assembly 36259 na scaffold_203 unplaced-scaffold na na JAMCCT010000119.1 = NW_026040243.1 Primary Assembly 35424 na scaffold_204 unplaced-scaffold na na JAMCCT010000120.1 = NW_026040244.1 Primary Assembly 35118 na scaffold_205 unplaced-scaffold na na JAMCCT010000121.1 = NW_026040245.1 Primary Assembly 35101 na scaffold_206 unplaced-scaffold na na JAMCCT010000122.1 = NW_026040246.1 Primary Assembly 34749 na scaffold_207 unplaced-scaffold na na JAMCCT010000123.1 = NW_026040247.1 Primary Assembly 34556 na scaffold_208 unplaced-scaffold na na JAMCCT010000124.1 = NW_026040248.1 Primary Assembly 34318 na scaffold_209 unplaced-scaffold na na JAMCCT010000125.1 = NW_026040249.1 Primary Assembly 34236 na scaffold_210 unplaced-scaffold na na JAMCCT010000126.1 = NW_026040250.1 Primary Assembly 34190 na scaffold_211 unplaced-scaffold na na JAMCCT010000127.1 = NW_026040251.1 Primary Assembly 33492 na scaffold_212 unplaced-scaffold na na JAMCCT010000128.1 = NW_026040252.1 Primary Assembly 33303 na scaffold_213 unplaced-scaffold na na JAMCCT010000129.1 = NW_026040253.1 Primary Assembly 32692 na scaffold_215 unplaced-scaffold na na JAMCCT010000130.1 = NW_026040254.1 Primary Assembly 31460 na scaffold_216 unplaced-scaffold na na JAMCCT010000131.1 = NW_026040255.1 Primary Assembly 31247 na scaffold_217 unplaced-scaffold na na JAMCCT010000132.1 = NW_026040256.1 Primary Assembly 30987 na scaffold_218 unplaced-scaffold na na JAMCCT010000133.1 = NW_026040257.1 Primary Assembly 29285 na scaffold_220 unplaced-scaffold na na JAMCCT010000134.1 = NW_026040258.1 Primary Assembly 28925 na scaffold_221 unplaced-scaffold na na JAMCCT010000135.1 = NW_026040259.1 Primary Assembly 28567 na scaffold_223 unplaced-scaffold na na JAMCCT010000136.1 = NW_026040261.1 Primary Assembly 28360 na scaffold_224 unplaced-scaffold na na JAMCCT010000137.1 = NW_026040262.1 Primary Assembly 26952 na scaffold_225 unplaced-scaffold na na JAMCCT010000138.1 = NW_026040263.1 Primary Assembly 26899 na scaffold_226 unplaced-scaffold na na JAMCCT010000139.1 = NW_026040264.1 Primary Assembly 26716 na scaffold_227 unplaced-scaffold na na JAMCCT010000140.1 = NW_026040265.1 Primary Assembly 25837 na scaffold_229 unplaced-scaffold na na JAMCCT010000141.1 = NW_026040267.1 Primary Assembly 2258 na scaffold_77 unplaced-scaffold na na JAMCCT010000142.1 = NW_026040269.1 Primary Assembly 440479 na scaffold_91 unplaced-scaffold na na JAMCCT010000143.1 = NW_026040270.1 Primary Assembly 278346 na scaffold_92 unplaced-scaffold na na JAMCCT010000144.1 = NW_026040271.1 Primary Assembly 275608 na scaffold_93 unplaced-scaffold na na JAMCCT010000145.1 = NW_026040272.1 Primary Assembly 272799 na scaffold_96 unplaced-scaffold na na JAMCCT010000146.1 = NW_026040273.1 Primary Assembly 230781 na scaffold_109 unplaced-scaffold na na JAMCCT010000147.1 = NW_026040178.1 Primary Assembly 155419 na scaffold_105 unplaced-scaffold na na JAMCCT010000148.1 = NW_026040176.1 Primary Assembly 174226 na scaffold_103 unplaced-scaffold na na JAMCCT010000149.1 = NW_026040175.1 Primary Assembly 190289 na scaffold_124 unplaced-scaffold na na JAMCCT010000150.1 = NW_026040188.1 Primary Assembly 104418 na scaffold_119 unplaced-scaffold na na JAMCCT010000151.1 = NW_026040185.1 Primary Assembly 117478 na scaffold_112 unplaced-scaffold na na JAMCCT010000152.1 = NW_026040180.1 Primary Assembly 145721 na scaffold_126 unplaced-scaffold na na JAMCCT010000153.1 = NW_026040189.1 Primary Assembly 102080 na scaffold_137 unplaced-scaffold na na JAMCCT010000154.1 = NW_026040192.1 Primary Assembly 76055 na scaffold_148 unplaced-scaffold na na JAMCCT010000155.1 = NW_026040199.1 Primary Assembly 55765 na scaffold_159 unplaced-scaffold na na JAMCCT010000156.1 = NW_026040207.1 Primary Assembly 52026 na scaffold_185 unplaced-scaffold na na JAMCCT010000157.1 = NW_026040229.1 Primary Assembly 41065 na scaffold_222_ctg1 unplaced-scaffold na na JAMCCT010000158.1 = NW_026040260.1 Primary Assembly 28406 na scaffold_228_ctg1 unplaced-scaffold na na JAMCCT010000159.1 = NW_026040266.1 Primary Assembly 22629 na URTXT_12a unplaced-scaffold na na JAMCCT010000160.1 = NW_026040169.1 Primary Assembly 427939 na URTXT_12b unplaced-scaffold na na JAMCCT010000161.1 = NW_026040170.1 Primary Assembly 227082 na URTXT_12c unplaced-scaffold na na JAMCCT010000162.1 = NW_026040171.1 Primary Assembly 401345 na URTXT_12d unplaced-scaffold na na JAMCCT010000163.1 = NW_026040172.1 Primary Assembly 92099 na URTXT_12e unplaced-scaffold na na JAMCCT010000164.1 = NW_026040173.1 Primary Assembly 81590 na MT assembled-molecule MT Mitochondrion na <> NC_034002.1 non-nuclear 16683 na